Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003080.1

Orthogroup ID

OG0006914

Physical Location & Seq

Genomic Coordinates Forward (+)

91286 .. 95335

Gene Structure 4050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003080.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

atgcctgcacacctcgatgatgaagctggaagacctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagagagagtcttatatgaagaagttgttaaaaacccagaagataattcatatagtcatgatgcgtggggtggtacagcaactccatatagttctgatgatggtggagagggtggaagcggaacaggtggtggaggtgaaagatataaatatggacaatcttctgtgggtggaggattaaaccaatttacatgtgaatgtaattttgattataccacccaagatgaagaccacaaagtgagaacagctggtcatggtgctcaagagaagacccgatatgggaggaggactagaggtgcaactgatgatcaaagtaccccatctgatgtttcttcaattgccttaagttttgactctatcagtttaggcacagatcgcaatgggatctcaaatgaatctcatgaagccaacaatcaatttgcttccgcaagcactgttacttgtagcttcaaacaagatggtagtgggaatacgatccaagggatgtttgtattcggaagctctctggtggacaatggtaacaataacttcttggaaaccaagtccaaagccgattacttgccgtatggaatcgacttcccaaatggaacttctgggagattcacaaatggtaaaaatgttattgatctcctcggtgatcagcttaagcttcccttcattccaccatttcaagacccctccaccaagggaagtaaaattgttcatggtgtcaatcatgcctctggctcttctggtatcttagatgatacaggattagttgtgggtaatgcaacgagcttgagtcaacaagttaaggactttgaggcggtgacactggcagagttagaagcagagctagggtgcagtagctctcaatcgctaccaagctacttgattgttgtaggagttggtgggaatgattacatgctcaactatttccttaggaaattgtacctccgaatcagtattgaaaacttcactgcaaatctcatagactctctagctcagaaactacaggaattgtacattttgggaggtcgtaaattcgtgttaacgtcgctaatgccattaggctacagtcctgtgattaacaggccaaatcttattggcaccccatcagctctgaattacgcagctcagctctacaacgctcgcttgaagacattgctcgactctctcaaaactcacttatctgacttcaatttcgttttggttaaccaatataacattatatccaatctcacttactctcctccttccactacaggctttaaagacataagcaacccttgttgtatagtttccctctctcaaggtggaaatggaatatcatgcgatagaggtgggaaggcatgtgaagataggacggcttatatgtattttgatgggttacatccaacagaagctgtgaacgttcaaatagcaaccaaggcatatgcttctactcaccagggcgacgcttacccaatcaatgtcagccaacttgcccagcttcaaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

519

Amino Acids

55.7

Weight (kDa)

4.96

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12400
malus_domestica	MD05G1039300.v1.1
prunus_persica	Prupe.8G051800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272471 RchiOBHm_Chr6g0272551
rosa_laevigata	RLG00000013667
rosa_multiflora	Rmu_sc0002847.1_g000001 Rmu_sc0002847.1_g000006 Rmu_sc0003080.1_g000018 Rmu_sc0004003.1_g000020 Rmu_sc0004904.1_g000002
rosa_roxburghii	Rroxscaffold_7G00196160
rosa_rugosa	Rorug06G0069900 Rorug06G0069900 Rorug06G0070000
rosa_samantha	Rh6AG185600 Rh6AG186300 Rh6BG188700 Rh6BG189000 Rh6BG189400 Rh6CG186800 Rh6CG187200 Rh6DG178400 Rh6DG178900
rosa_wichuraiana	Rw0G015690 Rw6G016050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1166
AciI	CCGC	3 cut(s)	198, 504, 884
AclI	AACGTT	1 cut(s)	1470
AclWI	GGATC	2 cut(s)	470, 547
AcsI	RAATTY	2 cut(s)	1100, 1554
AdeI	CACNNNGTG	1 cut(s)	316
AfaI	GTAC	4 cut(s)	154, 394, 1010, 1082
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflII	CTTAAG	2 cut(s)	421, 722
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	8 cut(s)	414, 529, 749, 1028, 1216, 1258, 1475, 1553
AjnI	CCWGG	1 cut(s)	1506
AjuI	GAANNNNNNNTTGG	2 cut(s)	652, 684
Alw21I	GWGCWC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	470, 547
AlwNI	CAGNNNCTG	1 cut(s)	1463
AoxI	GGCC	1 cut(s)	1151
ApeKI	GCWGC	1 cut(s)	1190
ApoI	RAATTY	2 cut(s)	1100, 1554
ArsI	GACNNNNNNTTYG	2 cut(s)	1244, 1276
AsuHPI	GGTGA	4 cut(s)	227, 725, 898, 1496
AxyI	CCTNAGG	1 cut(s)	998
BanI	GGYRCC	1 cut(s)	1166
BbsI	GAAGAC	4 cut(s)	37, 312, 353, 1223
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	1202
BccI	CCATC	5 cut(s)	173, 406, 530, 1180, 1436
BceAI	ACGGC	2 cut(s)	625, 1440
BciT130I	CCWGG	1 cut(s)	1508
BclI	TGATCA	2 cut(s)	385, 715
BfaI	CTAG	3 cut(s)	369, 914, 1058
BfmI	CTRYAG	3 cut(s)	1070, 1132, 1320
BfrI	CTTAAG	2 cut(s)	421, 722
BisI	GCNGC	1 cut(s)	1191
BlpI	GCTNAGC	1 cut(s)	1194
BlsI	GCNGC	1 cut(s)	1192
Bme1390I	CCNGG	1 cut(s)	1508
BmiI	GGNNCC	1 cut(s)	1168
BmrFI	CCNGG	1 cut(s)	1508
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	4 cut(s)	37, 312, 353, 1223
Bpu1102I	GCTNAGC	1 cut(s)	1194
BpuEI	CTTGAG	3 cut(s)	324, 877, 1353
BsaJI	CCNNGG	5 cut(s)	556, 709, 762, 1485, 1507
BsaXI	ACNNNNNCTCC	4 cut(s)	145, 175, 1291, 1321
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	897
Bse21I	CCTNAGG	1 cut(s)	998
Bse3DI	GCAATG	2 cut(s)	463, 1220
BseBI	CCWGG	1 cut(s)	1508
BseDI	CCNNGG	5 cut(s)	556, 709, 762, 1485, 1507
BseGI	GGATG	2 cut(s)	567, 1450
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	2 cut(s)	463, 1220
BseMII	CTCAG	2 cut(s)	1076, 1208
BseNI	ACTGG	1 cut(s)	897
BseRI	GAGGAG	3 cut(s)	376, 698, 1299
BseXI	GCAGC	1 cut(s)	1202
BseYI	CCCAGC	1 cut(s)	1545
BsgI	GTGCAG	1 cut(s)	940
BshFI	GGCC	1 cut(s)	1153
BshNI	GGYRCC	1 cut(s)	1166
BsiHKAI	GWGCWC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	357
BsnI	GGCC	1 cut(s)	1153
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp1407I	TGTACA	1 cut(s)	1080
Bsp143I	GATC	6 cut(s)	385, 451, 462, 552, 703, 715
Bsp1720I	GCTNAGC	1 cut(s)	1194
BspACI	CCGC	3 cut(s)	198, 504, 884
BspANI	GGCC	1 cut(s)	1153
BspCNI	CTCAG	2 cut(s)	1075, 1207
BspHI	TCATGA	2 cut(s)	136, 478
BspLI	GGNNCC	1 cut(s)	1168
BspPI	GGATC	2 cut(s)	470, 547
BspQI	GCTCTTC	1 cut(s)	811
BspT107I	GGYRCC	1 cut(s)	1166
BspTI	CTTAAG	2 cut(s)	421, 722
BsrDI	GCAATG	2 cut(s)	463, 1220
BsrGI	TGTACA	1 cut(s)	1080
BsrI	ACTGG	1 cut(s)	897
BssECI	CCNNGG	5 cut(s)	556, 709, 762, 1485, 1507
BssMI	GATC	6 cut(s)	385, 451, 462, 552, 703, 715
BssT1I	CCWWGG	3 cut(s)	556, 762, 1485
Bst2UI	CCWGG	1 cut(s)	1508
Bst4CI	ACNGT	2 cut(s)	514, 1136
Bst6I	CTCTTC	2 cut(s)	42, 811
BstAFI	CTTAAG	2 cut(s)	421, 722
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	1080
BstC8I	GCNNGC	3 cut(s)	6, 508, 1210
BstDEI	CTNAG	4 cut(s)	817, 998, 1062, 1194
BstF5I	GGATG	2 cut(s)	567, 1450
BstKTI	GATC	6 cut(s)	388, 454, 465, 555, 706, 718
BstMBI	GATC	6 cut(s)	385, 451, 462, 552, 703, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 453, 1487
BstNI	CCWGG	1 cut(s)	1508
BstNSI	RCATGY	3 cut(s)	273, 985, 1413
BstSCI	CCNGG	1 cut(s)	1506
BstSFI	CTRYAG	3 cut(s)	1070, 1132, 1320
BstV1I	GCAGC	1 cut(s)	1202
BstV2I	GAAGAC	4 cut(s)	37, 312, 353, 1223
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
Bsu36I	CCTNAGG	1 cut(s)	998
BsuRI	GGCC	1 cut(s)	1153
BtsCI	GGATG	2 cut(s)	567, 1450
BtsI	GCAGTG	1 cut(s)	1035
BtsIMutI	CAGTG	3 cut(s)	510, 890, 1035
Cac8I	GCNNGC	3 cut(s)	6, 508, 1210
CaiI	CAGNNNCTG	1 cut(s)	1463
CciI	TCATGA	2 cut(s)	136, 478
CseI	GACGC	1 cut(s)	1523
Csp6I	GTAC	4 cut(s)	153, 393, 1009, 1081
CviAII	CATG	9 cut(s)	137, 270, 332, 479, 782, 794, 982, 1389, 1410
CviQI	GTAC	4 cut(s)	153, 393, 1009, 1081
DdeI	CTNAG	4 cut(s)	817, 998, 1062, 1194
DpnI	GATC	6 cut(s)	387, 453, 464, 554, 705, 717
DpnII	GATC	6 cut(s)	385, 451, 462, 552, 703, 715
DraI	TTTAAA	1 cut(s)	1330
DraIII	CACNNNGTG	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	42, 811
EarI	CTCTTC	2 cut(s)	42, 811
Eco130I	CCWWGG	3 cut(s)	556, 762, 1485
Eco81I	CCTNAGG	1 cut(s)	998
EcoRII	CCWGG	1 cut(s)	1506
EcoT14I	CCWWGG	3 cut(s)	556, 762, 1485
ErhI	CCWWGG	3 cut(s)	556, 762, 1485
FaeI	CATG	9 cut(s)	140, 273, 335, 482, 785, 797, 985, 1392, 1413
FalI	AAGNNNNNCTT	4 cut(s)	716, 748, 1330, 1362
FatI	CATG	9 cut(s)	136, 269, 331, 478, 781, 793, 981, 1388, 1409
FauNDI	CATATG	1 cut(s)	1492
FbaI	TGATCA	2 cut(s)	385, 715
Fnu4HI	GCNGC	1 cut(s)	1191
FokI	GGATG	2 cut(s)	574, 1437
Fsp4HI	GCNGC	1 cut(s)	1191
FspBI	CTAG	3 cut(s)	369, 914, 1058
GluI	GCNGC	1 cut(s)	1191
GsaI	CCCAGC	1 cut(s)	1549
HaeIII	GGCC	1 cut(s)	1153
HgaI	GACGC	1 cut(s)	1523
Hin1II	CATG	9 cut(s)	140, 273, 335, 482, 785, 797, 985, 1392, 1413
HincII	GTYRAC	3 cut(s)	863, 1110, 1273
HindII	GTYRAC	3 cut(s)	863, 1110, 1273
HindIII	AAGCTT	1 cut(s)	725
HpaI	GTTAAC	2 cut(s)	1110, 1273
HphI	GGTGA	4 cut(s)	227, 725, 898, 1496
Hpy166II	GTNNAC	5 cut(s)	589, 863, 1110, 1273, 1468
Hpy188I	TCNGA	7 cut(s)	175, 403, 575, 1016, 1065, 1182, 1252
Hpy188III	TCNNGA	4 cut(s)	137, 341, 479, 749
Hpy8I	GTNNAC	5 cut(s)	589, 863, 1110, 1273, 1468
Hpy99I	CGWCG	2 cut(s)	1117, 1517
HpyAV	CCTTC	3 cut(s)	742, 1323, 1399
HpyCH4III	ACNGT	2 cut(s)	514, 1136
HpyCH4IV	ACGT	3 cut(s)	78, 1112, 1470
HpyCH4V	TGCA	6 cut(s)	8, 59, 377, 848, 921, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 453, 1487
HpyF3I	CTNAG	4 cut(s)	817, 998, 1062, 1194
HpySE526I	ACGT	3 cut(s)	78, 1112, 1470
Hsp92II	CATG	9 cut(s)	140, 273, 335, 482, 785, 797, 985, 1392, 1413
Ksp22I	TGATCA	2 cut(s)	385, 715
KspAI	GTTAAC	2 cut(s)	1110, 1273
Kzo9I	GATC	6 cut(s)	385, 451, 462, 552, 703, 715
LguI	GCTCTTC	1 cut(s)	811
Lsp1109I	GCAGC	1 cut(s)	1202
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	3 cut(s)	369, 914, 1058
MaeII	ACGT	3 cut(s)	78, 1112, 1470
MaeIII	GTNAC	4 cut(s)	514, 596, 886, 1446
MalI	GATC	6 cut(s)	387, 453, 464, 554, 705, 717
MboI	GATC	6 cut(s)	385, 451, 462, 552, 703, 715
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	340
MlyI	GAGTC	5 cut(s)	96, 425, 868, 1046, 1223
MmeI	TCCRAC	1 cut(s)	1478
MslI	CAYNNNNRTG	2 cut(s)	15, 274
MspA1I	CMGCKG	1 cut(s)	326
MspCI	CTTAAG	2 cut(s)	421, 722
MspR9I	CCNGG	1 cut(s)	1508
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	1508
MwoI	GCNNNNNNNGC	3 cut(s)	65, 453, 1487
NdeI	CATATG	1 cut(s)	1492
NdeII	GATC	6 cut(s)	385, 451, 462, 552, 703, 715
NlaIII	CATG	9 cut(s)	140, 273, 335, 482, 785, 797, 985, 1392, 1413
NlaIV	GGNNCC	1 cut(s)	1168
NmuCI	GTSAC	1 cut(s)	886
NspI	RCATGY	3 cut(s)	273, 985, 1413
PagI	TCATGA	2 cut(s)	136, 478
PciI	ACATGT	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	811
PfeI	GAWTC	5 cut(s)	72, 473, 648, 678, 1017
PkrI	GCNGC	1 cut(s)	1192
PleI	GAGTC	5 cut(s)	95, 425, 867, 1046, 1223
PpsI	GAGTC	5 cut(s)	95, 425, 867, 1046, 1223
PscI	ACATGT	1 cut(s)	269
Psp1406I	AACGTT	1 cut(s)	1470
Psp6I	CCWGG	1 cut(s)	1506
PspFI	CCCAGC	1 cut(s)	1545
PspGI	CCWGG	1 cut(s)	1506
PspN4I	GGNNCC	1 cut(s)	1168
PstNI	CAGNNNCTG	1 cut(s)	1463
PsuI	RGATCY	1 cut(s)	462
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	4 cut(s)	154, 394, 1010, 1082
RsaNI	GTAC	4 cut(s)	153, 393, 1009, 1081
RseI	CAYNNNNRTG	2 cut(s)	15, 274
SapI	GCTCTTC	1 cut(s)	811
SatI	GCNGC	1 cut(s)	1191
Sau3AI	GATC	6 cut(s)	385, 451, 462, 552, 703, 715
SchI	GAGTC	5 cut(s)	96, 425, 868, 1046, 1223
ScrFI	CCNGG	1 cut(s)	1508
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	3 cut(s)	1070, 1132, 1320
SmiMI	CAYNNNNRTG	2 cut(s)	15, 274
SmlI	CTYRAG	5 cut(s)	339, 421, 722, 856, 1368
SmoI	CTYRAG	5 cut(s)	339, 421, 722, 856, 1368
SsiI	CCGC	3 cut(s)	198, 504, 884
SspMI	CTAG	3 cut(s)	369, 914, 1058
StyD4I	CCNGG	1 cut(s)	1506
StyI	CCWWGG	3 cut(s)	556, 762, 1485
TaaI	ACNGT	2 cut(s)	514, 1136
TaiI	ACGT	3 cut(s)	81, 1115, 1473
TaqI	TCGA	3 cut(s)	15, 651, 1227
TatI	WGTACW	1 cut(s)	1080
TfiI	GAWTC	5 cut(s)	72, 473, 648, 678, 1017
TscAI	CASTG	3 cut(s)	517, 897, 1042
TseFI	GTSAC	1 cut(s)	886
TseI	GCWGC	1 cut(s)	1190
Tsp45I	GTSAC	1 cut(s)	886
TspDTI	ATGAA	8 cut(s)	36, 111, 117, 318, 486, 495, 724, 770
TspRI	CASTG	3 cut(s)	517, 897, 1042
Vha464I	CTTAAG	2 cut(s)	421, 722
XapI	RAATTY	2 cut(s)	1100, 1554
XceI	RCATGY	3 cut(s)	273, 985, 1413
XspI	CTAG	3 cut(s)	369, 914, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.