RLG00000013667

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006914
Physical Location & Seq
Forward (+)
35436843 .. 35438895
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013667

Sequence Viewer

Length: 1134 bp
ATGACAAAAGAAGCTTCAAAACTGGTGTGTTTGTATCTCTCTCTGATATTTGCTTCTGTATCTTCAGCTTCTGCAAGCACTGTTACTTGTAGCTTCAAACAAGATGGTAGTGGGAATACGATCCAAGGGATGTTTGTATTCGGAAGCTCTCTGGTGGACAATGGCAACAATAACTTCTTGGAAACCAAGTCCAAAGCCGATTACTTGCCGTATGGAATCGACTTCCCAAATGGAACTTCTGGGAGATTCACAAATGGTAAAAATGTTATTGATCTCCTCGGTGATCAGCTTAAGCTTCCCTTCATTCCACCATTTCAAGACCCCTCCACTAAGGGAAGTAAAATTGTTCATGGTGTCAATCATGCCTCTGGCTCTTCTGGTATCTTAGATGATACAGGATTAGTTGCGGGTAATGCAACGAGCTTGAGTCAACAAGTTAAGGACTTTGAGGGGGTGACACTGGCAGAGTTAGAAGCAGAGCTAGGGTGTAGTAGCTCTCAATCGCTACCAAGCTACTTGATTGTTGTAGGAGTTGGTGGGAATGATTACATGCTCAACTATTTCCTTAGGAAATTGTACCTTCGAATCAGTATTGAAACCTTCACTGCAAATCTCATAGACTCTCTAGCTCAGAAACTCCAGGAATTGTACAATTTGGGAGGTCGTAAATTCGTGTTAACGTCGCTAATGCCATTAGGCTACAGTCCTGTGATTAACAGGCCAAATCCTATTGGCAACCAATCAGCTCTGAATTACGGAGCTCAGCTCTACAACGCTCACTTGAAGACATTGCTCGACTCTCTCAAAACTCACTTATCCGACTTCAATTTCGTTTTGGTTAACCAATATAACATTATATCTAATCTCACTTATTCTCCTTCTTCCACTACAGGCTTTAAAGACATAAGCAACCCTTGTTGTACAGTTTCCCTCTCTCAAGGTGCAGGTGGAAATGGAATATCATGCGATAGAGGTGGGAAGGCATGTGAAGATAGGACGGCTTATATGTATTTTGATGGGTTACATCCAACAGAAGCTGTGAACGTTCAAATAGCAACCAAGGCATATGCTTCTACTCACCAGGGCGACGCTTACCCAATCAATGCCTGCCAACTTGCCCAGCTTCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

378

Amino Acids

40.41

Weight (kDa)

5.86

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 45 - 352 1.4e-24 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 935
Acc36I ACCTGC 1 cut(s) 935
AciI CCGC 1 cut(s) 407
AclI AACGTT 1 cut(s) 1044
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 2 cut(s) 668, 1128
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 3 cut(s) 578, 650, 922
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 8 cut(s) 18, 97, 317, 596, 784, 826, 1049, 1127
AjnI CCWGG 2 cut(s) 639, 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
Alw21I GWGCWC 1 cut(s) 763
AlwI GGATC 1 cut(s) 115
AlwNI CAGNNNCTG 2 cut(s) 71, 1037
AoxI GGCC 1 cut(s) 719
ApoI RAATTY 2 cut(s) 668, 1128
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AsuHPI GGTGA 3 cut(s) 293, 466, 1070
AsuII TTCGAA 1 cut(s) 583
AxyI CCTNAGG 1 cut(s) 566
BanII GRGCYC 1 cut(s) 763
BbsI GAAGAC 1 cut(s) 791
Bbv12I GWGCWC 1 cut(s) 763
BccI CCATC 2 cut(s) 98, 1010
BceAI ACGGC 2 cut(s) 193, 1014
BciT130I CCWGG 2 cut(s) 641, 1082
BclI TGATCA 1 cut(s) 283
BfaI CTAG 2 cut(s) 482, 626
BfmI CTRYAG 2 cut(s) 700, 888
BfrI CTTAAG 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 935
BlpI GCTNAGC 1 cut(s) 762
Bme1390I CCNGG 2 cut(s) 641, 1082
BmrFI CCNGG 2 cut(s) 641, 1082
BpiI GAAGAC 1 cut(s) 791
BplI GAGNNNNNCTC 2 cut(s) 750, 782
BpmI CTGGAG 1 cut(s) 623
Bpu1102I GCTNAGC 1 cut(s) 762
Bpu14I TTCGAA 1 cut(s) 583
BpuEI CTTGAG 2 cut(s) 445, 921
BsaJI CCNNGG 4 cut(s) 124, 277, 1059, 1081
BsaXI ACNNNNNCTCC 2 cut(s) 859, 889
Bse1I ACTGG 2 cut(s) 27, 465
Bse21I CCTNAGG 1 cut(s) 566
Bse3DI GCAATG 1 cut(s) 788
BseBI CCWGG 2 cut(s) 641, 1082
BseDI CCNNGG 4 cut(s) 124, 277, 1059, 1081
BseGI GGATG 2 cut(s) 135, 1024
BseMI GCAATG 1 cut(s) 788
BseMII CTCAG 2 cut(s) 644, 776
BseNI ACTGG 2 cut(s) 27, 465
BseRI GAGGAG 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 1119
BsgI GTGCAG 1 cut(s) 963
BshFI GGCC 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 763
BsnI GGCC 1 cut(s) 721
Bsp119I TTCGAA 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 763
Bsp1407I TGTACA 2 cut(s) 648, 920
Bsp143I GATC 3 cut(s) 120, 271, 283
Bsp1720I GCTNAGC 1 cut(s) 762
BspACI CCGC 1 cut(s) 407
BspANI GGCC 1 cut(s) 721
BspCNI CTCAG 2 cut(s) 643, 775
BspMI ACCTGC 1 cut(s) 935
BspPI GGATC 1 cut(s) 115
BspQI GCTCTTC 1 cut(s) 379
BspT104I TTCGAA 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 788
BsrGI TGTACA 2 cut(s) 648, 920
BsrI ACTGG 2 cut(s) 27, 465
BssECI CCNNGG 4 cut(s) 124, 277, 1059, 1081
BssMI GATC 3 cut(s) 120, 271, 283
BssT1I CCWWGG 2 cut(s) 124, 1059
Bst2UI CCWGG 2 cut(s) 641, 1082
Bst4CI ACNGT 3 cut(s) 82, 704, 925
Bst6I CTCTTC 1 cut(s) 379
BstAFI CTTAAG 1 cut(s) 290
BstAUI TGTACA 2 cut(s) 648, 920
BstBI TTCGAA 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 76, 1108
BstDEI CTNAG 5 cut(s) 330, 385, 566, 630, 762
BstF5I GGATG 2 cut(s) 135, 1024
BstKTI GATC 3 cut(s) 123, 274, 286
BstMBI GATC 3 cut(s) 120, 271, 283
BstMWI GCNNNNNNNGC 2 cut(s) 413, 1061
BstNI CCWGG 2 cut(s) 641, 1082
BstNSI RCATGY 2 cut(s) 553, 987
BstSCI CCNGG 2 cut(s) 639, 1080
BstSFI CTRYAG 2 cut(s) 700, 888
BstV2I GAAGAC 1 cut(s) 791
Bsu36I CCTNAGG 1 cut(s) 566
BsuRI GGCC 1 cut(s) 721
BtsCI GGATG 2 cut(s) 135, 1024
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 3 cut(s) 78, 458, 603
BveI ACCTGC 1 cut(s) 935
Cac8I GCNNGC 2 cut(s) 76, 1108
CaiI CAGNNNCTG 2 cut(s) 71, 1037
CseI GACGC 1 cut(s) 1097
Csp6I GTAC 3 cut(s) 577, 649, 921
CviAII CATG 5 cut(s) 350, 362, 550, 963, 984
CviQI GTAC 3 cut(s) 577, 649, 921
DdeI CTNAG 5 cut(s) 330, 385, 566, 630, 762
DpnI GATC 3 cut(s) 122, 273, 285
DpnII GATC 3 cut(s) 120, 271, 283
DraI TTTAAA 1 cut(s) 898
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Ecl136II GAGCTC 1 cut(s) 761
Eco130I CCWWGG 2 cut(s) 124, 1059
Eco24I GRGCYC 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 761
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 761
EcoRII CCWGG 2 cut(s) 639, 1080
EcoT14I CCWWGG 2 cut(s) 124, 1059
EcoT38I GRGCYC 1 cut(s) 763
ErhI CCWWGG 2 cut(s) 124, 1059
FaeI CATG 5 cut(s) 353, 365, 553, 966, 987
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 898, 930
FatI CATG 5 cut(s) 349, 361, 549, 962, 983
FauI CCCGC 1 cut(s) 400
FauNDI CATATG 1 cut(s) 1066
FbaI TGATCA 1 cut(s) 283
FokI GGATG 2 cut(s) 142, 1011
FriOI GRGCYC 1 cut(s) 763
FspBI CTAG 2 cut(s) 482, 626
GsaI CCCAGC 1 cut(s) 1123
GsuI CTGGAG 1 cut(s) 623
HaeIII GGCC 1 cut(s) 721
HgaI GACGC 1 cut(s) 1097
Hin1II CATG 5 cut(s) 353, 365, 553, 966, 987
HincII GTYRAC 3 cut(s) 431, 678, 841
HindII GTYRAC 3 cut(s) 431, 678, 841
HindIII AAGCTT 2 cut(s) 12, 293
HinfI GANTC 6 cut(s) 216, 246, 427, 585, 620, 797
HpaI GTTAAC 2 cut(s) 678, 841
HphI GGTGA 3 cut(s) 293, 466, 1070
Hpy166II GTNNAC 5 cut(s) 157, 431, 678, 841, 1042
Hpy188I TCNGA 5 cut(s) 45, 143, 633, 750, 820
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 5 cut(s) 157, 431, 678, 841, 1042
Hpy99I CGWCG 2 cut(s) 685, 1091
HpyAV CCTTC 5 cut(s) 310, 590, 610, 888, 973
HpyCH4III ACNGT 3 cut(s) 82, 704, 925
HpyCH4IV ACGT 2 cut(s) 680, 1044
HpyCH4V TGCA 4 cut(s) 74, 416, 608, 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 1061
HpyF3I CTNAG 5 cut(s) 330, 385, 566, 630, 762
HpySE526I ACGT 2 cut(s) 680, 1044
Hsp92II CATG 5 cut(s) 353, 365, 553, 966, 987
Ksp22I TGATCA 1 cut(s) 283
KspAI GTTAAC 2 cut(s) 678, 841
Kzo9I GATC 3 cut(s) 120, 271, 283
LguI GCTCTTC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 758
MaeI CTAG 2 cut(s) 482, 626
MaeII ACGT 2 cut(s) 680, 1044
MaeIII GTNAC 3 cut(s) 82, 454, 1020
MalI GATC 3 cut(s) 122, 273, 285
MboI GATC 3 cut(s) 120, 271, 283
MboII GAAGA 5 cut(s) 54, 366, 796, 873, 1001
MhlI GDGCHC 1 cut(s) 763
MluCI AATT 8 cut(s) 342, 572, 644, 652, 668, 751, 826, 1128
MlyI GAGTC 3 cut(s) 436, 614, 791
MmeI TCCRAC 2 cut(s) 843, 1052
MnlI CCTC 7 cut(s) 287, 334, 376, 442, 653, 941, 965
MseI TTAA 7 cut(s) 291, 438, 677, 714, 840, 897, 1132
MspCI CTTAAG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 641, 1082
MvaI CCWGG 2 cut(s) 641, 1082
MwoI GCNNNNNNNGC 2 cut(s) 413, 1061
NdeI CATATG 1 cut(s) 1066
NdeII GATC 3 cut(s) 120, 271, 283
NlaIII CATG 5 cut(s) 353, 365, 553, 966, 987
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 2 cut(s) 553, 987
NspV TTCGAA 1 cut(s) 583
PaqCI CACCTGC 1 cut(s) 935
PciSI GCTCTTC 1 cut(s) 379
PfeI GAWTC 3 cut(s) 216, 246, 585
PfoI TCCNGGA 1 cut(s) 639
PleI GAGTC 3 cut(s) 435, 614, 791
PpsI GAGTC 3 cut(s) 435, 614, 791
Psp124BI GAGCTC 1 cut(s) 763
Psp1406I AACGTT 1 cut(s) 1044
Psp6I CCWGG 2 cut(s) 639, 1080
PspFI CCCAGC 1 cut(s) 1119
PspGI CCWGG 2 cut(s) 639, 1080
PstNI CAGNNNCTG 2 cut(s) 71, 1037
RsaI GTAC 3 cut(s) 578, 650, 922
RsaNI GTAC 3 cut(s) 577, 649, 921
SacI GAGCTC 1 cut(s) 763
SapI GCTCTTC 1 cut(s) 379
SaqAI TTAA 7 cut(s) 291, 438, 677, 714, 840, 897, 1132
Sau3AI GATC 3 cut(s) 120, 271, 283
SchI GAGTC 3 cut(s) 436, 614, 791
ScrFI CCNGG 2 cut(s) 641, 1082
SduI GDGCHC 1 cut(s) 763
SfcI CTRYAG 2 cut(s) 700, 888
SfuI TTCGAA 1 cut(s) 583
SmlI CTYRAG 3 cut(s) 290, 424, 936
SmoI CTYRAG 3 cut(s) 290, 424, 936
Sse9I AATT 8 cut(s) 342, 572, 644, 652, 668, 751, 826, 1128
SsiI CCGC 1 cut(s) 407
SspMI CTAG 2 cut(s) 482, 626
SstI GAGCTC 1 cut(s) 763
StyD4I CCNGG 2 cut(s) 639, 1080
StyI CCWWGG 2 cut(s) 124, 1059
TaaI ACNGT 3 cut(s) 82, 704, 925
TaiI ACGT 2 cut(s) 683, 1047
TaqI TCGA 3 cut(s) 219, 583, 795
TasI AATT 8 cut(s) 342, 572, 644, 652, 668, 751, 826, 1128
TatI WGTACW 2 cut(s) 648, 920
TfiI GAWTC 3 cut(s) 216, 246, 585
Tru1I TTAA 7 cut(s) 291, 438, 677, 714, 840, 897, 1132
Tru9I TTAA 7 cut(s) 291, 438, 677, 714, 840, 897, 1132
TscAI CASTG 3 cut(s) 85, 465, 610
TseFI GTSAC 1 cut(s) 454
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 2 cut(s) 292, 338
TspGWI ACGGA 1 cut(s) 771
TspRI CASTG 3 cut(s) 85, 465, 610
Vha464I CTTAAG 1 cut(s) 290
XapI RAATTY 2 cut(s) 668, 1128
XceI RCATGY 2 cut(s) 553, 987
XspI CTAG 2 cut(s) 482, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.