Rh6DG178400

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006914
Physical Location & Seq
Reverse (-)
31430152 .. 31434422
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG178400.1

Sequence Viewer

Length: 933 bp
ATGACAAAAGAAGCTTCAAAACTGGTGTGTTTGTATCTCTCTCTGATATTTGCTTCTGTATCTTCAGCTTCCGCAAGCACTGTTTATTGTAGTTTCAAACAACATGGTAGTGGGAATACGATCCAAGGGATGTTTGTGTTCGGAAGTTCTCTGGTGGACAATGGCAACAATAACTTCCTGGAAACCGAGTCCAAAGCCGATTACTTGCCGTATGGAATCGACTTCCCAAATGGAACTACTGGGAGATTCACAAATGGTAAAAATGTTATTGATCTTCTCGGTGATCAGTTTAAGCTTCCCTTCATTCCACCATTTCAAGACCCCTCCACTAAAGGAAGTAAAATTGTTCATGGTGTCAACCATGCCTCTGGCTCTACTGGTATCTTAGATGATACAGGATTAGTTCTGGGTAATGCAACGAGCTTGAGTCAACAAGTTAAGGACTTCGAGGTTGTGACACTGGCAGAGTTAGAAGCAGAGCTAGGGTGCAATAGCTCTCAATCTCTACCAAGCTACTTGATTGTTGTAGGAGTTGGTGGGAATGATTACATGCTCAACTATTTCCTTAGGAAATTGTACCTCCGAATCAGTCTTGAAACCTTCACTGCAAATCTCATCGACTCTCTAGCTCAGAAACTCCAGGAATTGTACATTTTGGGAGGTCGTAAATTCGTGTTAACGTCGCTAATGCCATTAGGCTACAGTCCTGTGATTAACAGGCCAAATCATATTGGCACCCCATCAGCTCTGAATTACGCAGCTCAGCTCTACAACGCTCACTTGAAGACATTGCTCGACTCTCTGAAAACTCACTTATCCGACTTCAATTTCGTTTTGGTTGACCAATATAACATCATATCTAATCTCACTTATTCTCCTCCTTCCACTACAGGTACTTTTAGTATCACTAGTATTAGTTCTTTAAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

310

Amino Acids

33.67

Weight (kDa)

6.05

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 45 - 285 4.3e-19 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 734
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 2 cut(s) 668, 926
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 3 cut(s) 578, 650, 895
AgsI TTSAA 6 cut(s) 18, 97, 317, 596, 784, 826
AhlI ACTAGT 1 cut(s) 908
AjnI CCWGG 2 cut(s) 177, 639
AlwI GGATC 1 cut(s) 115
AoxI GGCC 1 cut(s) 719
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 2 cut(s) 668, 926
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AsuHPI GGTGA 1 cut(s) 293
AxyI CCTNAGG 1 cut(s) 566
BanI GGYRCC 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 791
BbvI GCAGC 1 cut(s) 770
BccI CCATC 1 cut(s) 748
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 2 cut(s) 179, 641
BclI TGATCA 1 cut(s) 283
BcuI ACTAGT 1 cut(s) 908
BfaI CTAG 3 cut(s) 482, 626, 909
BfmI CTRYAG 2 cut(s) 700, 888
BisI GCNGC 1 cut(s) 759
BlpI GCTNAGC 1 cut(s) 762
BlsI GCNGC 1 cut(s) 760
Bme1390I CCNGG 2 cut(s) 179, 641
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 2 cut(s) 179, 641
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 623
Bpu1102I GCTNAGC 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 859, 889
Bse1I ACTGG 4 cut(s) 27, 244, 382, 465
Bse21I CCTNAGG 1 cut(s) 566
Bse3DI GCAATG 1 cut(s) 788
BseBI CCWGG 2 cut(s) 179, 641
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 788
BseMII CTCAG 2 cut(s) 644, 776
BseNI ACTGG 4 cut(s) 27, 244, 382, 465
BseRI GAGGAG 1 cut(s) 867
BseXI GCAGC 1 cut(s) 770
BshFI GGCC 1 cut(s) 721
BshNI GGYRCC 1 cut(s) 734
BsnI GGCC 1 cut(s) 721
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 3 cut(s) 120, 271, 283
Bsp1720I GCTNAGC 1 cut(s) 762
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 721
BspCNI CTCAG 2 cut(s) 643, 775
BspLI GGNNCC 1 cut(s) 736
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 788
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 4 cut(s) 27, 244, 382, 465
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 3 cut(s) 120, 271, 283
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 2 cut(s) 179, 641
Bst4CI ACNGT 2 cut(s) 82, 704
BstAUI TGTACA 1 cut(s) 648
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 4 cut(s) 385, 566, 630, 762
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 3 cut(s) 123, 274, 286
BstMBI GATC 3 cut(s) 120, 271, 283
BstNI CCWGG 2 cut(s) 179, 641
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 2 cut(s) 177, 639
BstSFI CTRYAG 2 cut(s) 700, 888
BstV1I GCAGC 1 cut(s) 770
BstV2I GAAGAC 1 cut(s) 791
BstXI CCANNNNNNTGG 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 566
BsuRI GGCC 1 cut(s) 721
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 3 cut(s) 78, 458, 603
Cac8I GCNNGC 1 cut(s) 76
Csp6I GTAC 3 cut(s) 577, 649, 894
CviAII CATG 4 cut(s) 104, 350, 362, 550
CviQI GTAC 3 cut(s) 577, 649, 894
DdeI CTNAG 4 cut(s) 385, 566, 630, 762
DpnI GATC 3 cut(s) 122, 273, 285
DpnII GATC 3 cut(s) 120, 271, 283
DraI TTTAAA 1 cut(s) 924
Eco130I CCWWGG 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 566
EcoRII CCWGG 2 cut(s) 177, 639
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 4 cut(s) 107, 353, 365, 553
FaiI YATR 8 cut(s) 105, 213, 351, 363, 551, 729, 849, 857
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 4 cut(s) 103, 349, 361, 549
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 759
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 759
FspBI CTAG 3 cut(s) 482, 626, 909
GluI GCNGC 1 cut(s) 759
GsuI CTGGAG 1 cut(s) 623
HaeIII GGCC 1 cut(s) 721
Hin1II CATG 4 cut(s) 107, 353, 365, 553
HincII GTYRAC 4 cut(s) 358, 431, 678, 841
HindII GTYRAC 4 cut(s) 358, 431, 678, 841
HindIII AAGCTT 2 cut(s) 12, 293
HinfI GANTC 7 cut(s) 188, 216, 246, 427, 585, 620, 797
HpaI GTTAAC 1 cut(s) 678
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 5 cut(s) 157, 358, 431, 678, 841
Hpy188I TCNGA 8 cut(s) 45, 143, 584, 633, 750, 804, 820, 932
Hpy188III TCNNGA 2 cut(s) 317, 593
Hpy8I GTNNAC 5 cut(s) 157, 358, 431, 678, 841
Hpy99I CGWCG 1 cut(s) 685
HpyAV CCTTC 3 cut(s) 310, 610, 891
HpyCH4III ACNGT 2 cut(s) 82, 704
HpyCH4IV ACGT 1 cut(s) 680
HpyCH4V TGCA 3 cut(s) 416, 489, 608
HpyF3I CTNAG 4 cut(s) 385, 566, 630, 762
HpySE526I ACGT 1 cut(s) 680
Hsp92II CATG 4 cut(s) 107, 353, 365, 553
Ksp22I TGATCA 1 cut(s) 283
KspAI GTTAAC 1 cut(s) 678
Kzo9I GATC 3 cut(s) 120, 271, 283
Lsp1109I GCAGC 1 cut(s) 770
MaeI CTAG 3 cut(s) 482, 626, 909
MaeII ACGT 1 cut(s) 680
MaeIII GTNAC 1 cut(s) 454
MalI GATC 3 cut(s) 122, 273, 285
MboI GATC 3 cut(s) 120, 271, 283
MboII GAAGA 3 cut(s) 54, 266, 796
MluCI AATT 7 cut(s) 342, 572, 644, 668, 751, 826, 926
MlyI GAGTC 4 cut(s) 197, 436, 614, 791
MmeI TCCRAC 1 cut(s) 843
MnlI CCTC 6 cut(s) 334, 376, 442, 590, 653, 888
MseI TTAA 5 cut(s) 291, 438, 677, 714, 923
MslI CAYNNNNRTG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 179, 641
MvaI CCWGG 2 cut(s) 179, 641
NdeII GATC 3 cut(s) 120, 271, 283
NlaIII CATG 4 cut(s) 107, 353, 365, 553
NlaIV GGNNCC 1 cut(s) 736
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 1 cut(s) 553
PfeI GAWTC 3 cut(s) 216, 246, 585
PfoI TCCNGGA 2 cut(s) 177, 639
PkrI GCNGC 1 cut(s) 760
PleI GAGTC 4 cut(s) 196, 435, 614, 791
PpsI GAGTC 4 cut(s) 196, 435, 614, 791
Psp6I CCWGG 2 cut(s) 177, 639
PspGI CCWGG 2 cut(s) 177, 639
PspN4I GGNNCC 1 cut(s) 736
RsaI GTAC 3 cut(s) 578, 650, 895
RsaNI GTAC 3 cut(s) 577, 649, 894
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 5 cut(s) 291, 438, 677, 714, 923
SatI GCNGC 1 cut(s) 759
Sau3AI GATC 3 cut(s) 120, 271, 283
SchI GAGTC 4 cut(s) 197, 436, 614, 791
ScrFI CCNGG 2 cut(s) 179, 641
SfcI CTRYAG 2 cut(s) 700, 888
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
SpeI ACTAGT 1 cut(s) 908
Sse9I AATT 7 cut(s) 342, 572, 644, 668, 751, 826, 926
SsiI CCGC 1 cut(s) 72
SspMI CTAG 3 cut(s) 482, 626, 909
StyD4I CCNGG 2 cut(s) 177, 639
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 82, 704
TaiI ACGT 1 cut(s) 683
TaqI TCGA 4 cut(s) 219, 447, 618, 795
TasI AATT 7 cut(s) 342, 572, 644, 668, 751, 826, 926
TatI WGTACW 1 cut(s) 648
TfiI GAWTC 3 cut(s) 216, 246, 585
Tru1I TTAA 5 cut(s) 291, 438, 677, 714, 923
Tru9I TTAA 5 cut(s) 291, 438, 677, 714, 923
TscAI CASTG 3 cut(s) 85, 465, 610
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 1 cut(s) 758
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 2 cut(s) 292, 338
TspRI CASTG 3 cut(s) 85, 465, 610
XapI RAATTY 2 cut(s) 668, 926
XceI RCATGY 1 cut(s) 553
XspI CTAG 3 cut(s) 482, 626, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.