Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009009

Physical Location & Seq

Genomic Coordinates Reverse (-)

19776926 .. 19780643

Gene Structure 3718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G215400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGGGTGTTTTGGGTAGTGGTGGTGGAGGTGGAGGTTCAGCTGGTGGGTCTTTGATTATGTCAACGCTGTCTAGAGAAGACAACTTGGCCATGTCTTCTGAGGACTCTTCTAGCCCAGATGAGTCTGAGCTTGAGCTCTGTCTTGGGTTGAGCCTTGGTGGAGGTGGTGGTGGCTGTCTAGGGAAGGCCCAACAAGGCCCAAGGGGTCAATATGCTAGGATCTTGACTGCTAAAGATTTTCCTTCTGTGCGTTCATCTTTGTCTTCATCATCAGCTTCTTCGTCGTCCTCATCTTCTTCTTCATTGAGCAGTGCTAATGTCACAGCTGGGACCAAGAGAAGTGCTGATTCTGTGGCAGCTGCTAATGGTGCCAGCAGTCAGGTTGTGGGATGGCCTCCAATCAGAACTTATAGAATGAATAGTTTGGTTACCCAAGCGAAATCTTCATCCACTGAAGTATTTAACTCAGTAGATGAGAAAAGTGAATGCAAGAATACTGCAGGGAAGGCAAACAGTGGAAATGCTAAGGAGAAAGGGCACCTGAGGGCCTCCCTATTTGTGAAGGTGAATATGGATGGAACTCCAATTGGGCGGAAGGTTAATCTAAGTGCACAGAGTTGCTATGAAGCTCTAGCACAAACATTGGAAGATATGTTCGATGGACCCTCTATGCATCTGAACTCAATACGTTCAGGTGGTCAGGAGGAGCACGGTATAATGGCAGGAGCAACTAGACCATCAAAGTTGCTGGATGGATCATTTGAGTTTGTGCTCACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTTCTTGGTACTGTGAAGAGGTTAAGAATTATGAGGACATCTGAGGCTAATGGGCTTGCTCCAAGGCTACAGGAAAAGAATGTGAGGCAAAGATGCCAGCCGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

314

Amino Acids

32.63

Weight (kDa)

6.84

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28640 AT4G28640 AT4G28640
fragaria_vesca	FvH4_2g20500 FvH4_2g20500
malus_domestica	MD05G1188800.v1.1 MD10G1176400.v1.1
prunus_persica	Prupe.8G215400_v2.0.a1 Prupe.8G215400_v2.0.a1
pyrus_communis	pycom05g17340 pycom10g15230
rosa_chinensis	RchiOBHm_Chr6g0286601
rosa_laevigata	RLG00000012555
rosa_multiflora	Rmu_sc0000560.1_g000004
rosa_roxburghii	Rroxscaffold_7G00182150
rosa_rugosa	Rorug06G0181400 Rorug06G0181500
rosa_samantha	Rh6AG294300 Rh6BG297400 Rh6CG297800 Rh6DG289700
rosa_wichuraiana	Rw6G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	371, 540
AciI	CCGC	1 cut(s)	595
AclWI	GGATC	2 cut(s)	230, 766
AcoI	YGGCCR	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	844
AloI	GAACNNNNNNTCC	2 cut(s)	641, 673
AluBI	AGCT	7 cut(s)	44, 133, 139, 278, 329, 362, 632
AluI	AGCT	7 cut(s)	44, 133, 139, 278, 329, 362, 632
Alw21I	GWGCWC	4 cut(s)	141, 616, 714, 777
Alw26I	GTCTC	1 cut(s)	792
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	230, 766
AoxI	GGCC	5 cut(s)	90, 189, 199, 395, 549
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	2 cut(s)	359, 362
AspS9I	GGNCC	5 cut(s)	190, 200, 333, 549, 665
AsuHPI	GGTGA	1 cut(s)	580
AvaII	GGWCC	2 cut(s)	333, 665
AxyI	CCTNAGG	1 cut(s)	545
BaeGI	GKGCMC	2 cut(s)	543, 616
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	2 cut(s)	371, 540
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	4 cut(s)	87, 90, 258, 792
Bbv12I	GWGCWC	4 cut(s)	141, 616, 714, 777
BbvI	GCAGC	2 cut(s)	349, 371
BccI	CCATC	6 cut(s)	387, 572, 656, 748, 749, 788
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	6 cut(s)	75, 114, 182, 219, 635, 735
BfmI	CTRYAG	2 cut(s)	501, 902
BisI	GCNGC	2 cut(s)	360, 363
BlsI	GCNGC	2 cut(s)	361, 364
Bme18I	GGWCC	2 cut(s)	333, 665
BmgT120I	GGNCC	5 cut(s)	190, 200, 333, 549, 665
BmiI	GGNNCC	4 cut(s)	334, 373, 542, 667
BmsI	GCATC	3 cut(s)	685, 795, 917
BpiI	GAAGAC	4 cut(s)	87, 90, 258, 792
Bpu10I	CCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	157, 203, 824, 896
Bse1I	ACTGG	1 cut(s)	806
Bse21I	CCTNAGG	1 cut(s)	545
BseDI	CCNNGG	4 cut(s)	157, 203, 824, 896
BseGI	GGATG	6 cut(s)	398, 449, 583, 760, 810, 837
BseMII	CTCAG	5 cut(s)	93, 120, 483, 536, 867
BseNI	ACTGG	1 cut(s)	806
BseRI	GAGGAG	1 cut(s)	722
BseSI	GKGCMC	2 cut(s)	543, 616
BseXI	GCAGC	2 cut(s)	349, 371
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	5 cut(s)	92, 191, 201, 397, 551
BshNI	GGYRCC	2 cut(s)	371, 540
BsiHKAI	GWGCWC	4 cut(s)	141, 616, 714, 777
BslFI	GGGAC	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	5 cut(s)	92, 191, 201, 397, 551
Bsp1286I	GDGCHC	5 cut(s)	141, 543, 616, 714, 777
Bsp143I	GATC	2 cut(s)	222, 758
BspACI	CCGC	1 cut(s)	595
BspANI	GGCC	5 cut(s)	92, 191, 201, 397, 551
BspCNI	CTCAG	5 cut(s)	94, 121, 482, 537, 868
BspLI	GGNNCC	4 cut(s)	334, 373, 542, 667
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	2 cut(s)	230, 766
BspT107I	GGYRCC	2 cut(s)	371, 540
BsrI	ACTGG	1 cut(s)	806
BssECI	CCNNGG	4 cut(s)	157, 203, 824, 896
BssMI	GATC	2 cut(s)	222, 758
BssT1I	CCWWGG	4 cut(s)	157, 203, 824, 896
Bst4CI	ACNGT	3 cut(s)	518, 716, 847
Bst6I	CTCTTC	2 cut(s)	115, 845
BstC8I	GCNNGC	3 cut(s)	376, 891, 932
BstDEI	CTNAG	7 cut(s)	102, 129, 469, 528, 545, 608, 876
BstEII	GGTNACC	1 cut(s)	430
BstF5I	GGATG	6 cut(s)	398, 449, 583, 760, 810, 837
BstKTI	GATC	2 cut(s)	225, 761
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	2 cut(s)	222, 758
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 509
BstPI	GGTNACC	1 cut(s)	430
BstSFI	CTRYAG	2 cut(s)	501, 902
BstSLI	GKGCMC	2 cut(s)	543, 616
BstV1I	GCAGC	2 cut(s)	349, 371
BstV2I	GAAGAC	4 cut(s)	87, 90, 258, 792
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	545
BsuRI	GGCC	5 cut(s)	92, 191, 201, 397, 551
BtsCI	GGATG	6 cut(s)	398, 449, 583, 760, 810, 837
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	319, 453, 523
Cac8I	GCNNGC	3 cut(s)	376, 891, 932
Cfr13I	GGNCC	5 cut(s)	190, 200, 333, 549, 665
Csp6I	GTAC	1 cut(s)	843
CviAII	CATG	1 cut(s)	94
CviQI	GTAC	1 cut(s)	843
DdeI	CTNAG	7 cut(s)	102, 129, 469, 528, 545, 608, 876
DpnI	GATC	2 cut(s)	224, 760
DpnII	GATC	2 cut(s)	222, 758
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	115, 845
EarI	CTCTTC	2 cut(s)	115, 845
EciI	GGCGGA	1 cut(s)	610
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	4 cut(s)	157, 203, 824, 896
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	333, 665
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	545
Eco91I	GGTNACC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	549
EcoO65I	GGTNACC	1 cut(s)	430
EcoT14I	CCWWGG	4 cut(s)	157, 203, 824, 896
EcoT22I	ATGCAT	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	4 cut(s)	157, 203, 824, 896
FaeI	CATG	1 cut(s)	97
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	360, 363
FokI	GGATG	6 cut(s)	405, 436, 590, 767, 817, 844
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	360, 363
FspBI	CTAG	6 cut(s)	75, 114, 182, 219, 635, 735
GluI	GCNGC	2 cut(s)	360, 363
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	5 cut(s)	92, 191, 201, 397, 551
Hin1II	CATG	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	3 cut(s)	107, 125, 350
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	66, 614
Hpy188I	TCNGA	5 cut(s)	103, 130, 407, 681, 877
Hpy188III	TCNNGA	3 cut(s)	75, 226, 704
Hpy8I	GTNNAC	2 cut(s)	66, 614
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	5 cut(s)	181, 255, 502, 559, 592
HpyCH4III	ACNGT	3 cut(s)	518, 716, 847
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	4 cut(s)	492, 503, 614, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 509
HpyF3I	CTNAG	7 cut(s)	102, 129, 469, 528, 545, 608, 876
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	222, 758
LmnI	GCTCC	3 cut(s)	709, 728, 898
Lsp1109I	GCAGC	2 cut(s)	349, 371
LweI	GCATC	3 cut(s)	685, 795, 917
MaeI	CTAG	6 cut(s)	75, 114, 182, 219, 635, 735
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	2 cut(s)	322, 430
MalI	GATC	2 cut(s)	224, 760
MboI	GATC	2 cut(s)	222, 758
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	5 cut(s)	141, 543, 616, 714, 777
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	588, 861
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	2 cut(s)	101, 134
MmeI	TCCRAC	1 cut(s)	793
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	3 cut(s)	465, 603, 857
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	3 cut(s)	44, 329, 362
MunI	CAATTG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	371, 509
NdeII	GATC	2 cut(s)	222, 758
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	4 cut(s)	334, 373, 542, 667
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	678
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	361, 364
PleI	GAGTC	2 cut(s)	101, 133
PpsI	GAGTC	2 cut(s)	101, 133
Psp124BI	GAGCTC	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	4 cut(s)	334, 373, 542, 667
PspPI	GGNCC	5 cut(s)	190, 200, 333, 549, 665
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	222
PvuII	CAGCTG	3 cut(s)	44, 329, 362
RsaI	GTAC	1 cut(s)	844
RsaNI	GTAC	1 cut(s)	843
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	465, 603, 857
SatI	GCNGC	2 cut(s)	360, 363
Sau3AI	GATC	2 cut(s)	222, 758
Sau96I	GGNCC	5 cut(s)	190, 200, 333, 549, 665
SchI	GAGTC	2 cut(s)	101, 134
SduI	GDGCHC	5 cut(s)	141, 543, 616, 714, 777
SfaNI	GCATC	3 cut(s)	685, 795, 917
SfcI	CTRYAG	2 cut(s)	501, 902
SinI	GGWCC	2 cut(s)	333, 665
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	588, 861
SsiI	CCGC	1 cut(s)	595
SspMI	CTAG	6 cut(s)	75, 114, 182, 219, 635, 735
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	4 cut(s)	157, 203, 824, 896
TaaI	ACNGT	3 cut(s)	518, 716, 847
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	1 cut(s)	660
TasI	AATT	2 cut(s)	588, 861
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	3 cut(s)	465, 603, 857
Tru9I	TTAA	3 cut(s)	465, 603, 857
TscAI	CASTG	3 cut(s)	319, 460, 523
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	359, 362
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	7 cut(s)	246, 258, 294, 434, 438, 642, 798
TspRI	CASTG	3 cut(s)	319, 460, 523
VneI	GTGCAC	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	333, 665
XbaI	TCTAGA	1 cut(s)	74
XspI	CTAG	6 cut(s)	75, 114, 182, 219, 635, 735
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.