Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009009

Physical Location & Seq

Genomic Coordinates Forward (+)

19800702 .. 19803679

Gene Structure 2978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012555

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCAGGGTTTATCTGGAGGTTTAGGAACTGGGTCTGTGACTAACATGTCGACCGTGTCCAAAGATGAGAACTTTGCTATGTCTTCTGAGGATTCTTGTAACCCAGATGAGTCTGAGCTCGAGCTCTGTCTTGGGCTGAGTCTCGGCGGTGGCGGGAAGGCGGCCCAGCAAGGCCCAGTTGGGAATTATGCTAGGATTCTGACGGCCAAGGATTTCCGTTATGTGGGTTCTAACTCTAAGTCGTCGGCGGCGGCTGCTTCTTCGTCGTCGTCGTCGTCTTCTTCTTCGTTGAGCAGTGCTAATGCTACGGCTGGGACTAAGAGGAGTGCTGATTCTGTGGCAGCGGCTAATGGTGCCAATCAGGTTGTGGGATGGCCTCCTATCAGAGCTTATAGAATGAATTCCTTGGTTCATCAAGCAAAATCTTCAGCCACTGAAGTATTTAACTCGGAGAAAGGTGAATGCAAGATTATTTCAGGGAAGGCTAACATTGGTGGTCAAGAAAACAATGCAAATGCTAAGGAGAGAGGACGCCTCACTAGTTCCCTGTTTGTGAAGGTGAATATGGATGGAAGTCCAATCGGAAGGAAGGTTAACCTAACTGCACATAGCAGCTATGAAGCCCTAGCACAAACGTTGGAGGATATGTTCCAGGGACCCTCTGCAAATGCGAAATTGATACGTTCTGGTGGTCAGGGGCATGATATAATGGTGGGAGAAACTATACCCTCAAAGTTGCTAGATGGATCATTTGATTTTGCACTCACTTATGAAGACAAAGAAGGTGACTGGATGCTTGTTGGGGATGTTCCTTGGAGGATGTTTCTTTGTTCTGTGAAGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

296

Amino Acids

30.86

Weight (kDa)

6.84

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	39 - 294	2e-62	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28640 AT4G28640 AT4G28640
fragaria_vesca	FvH4_2g20500 FvH4_2g20500
malus_domestica	MD05G1188800.v1.1 MD10G1176400.v1.1
prunus_persica	Prupe.8G215400_v2.0.a1 Prupe.8G215400_v2.0.a1
pyrus_communis	pycom05g17340 pycom10g15230
rosa_chinensis	RchiOBHm_Chr6g0286601
rosa_laevigata	RLG00000012555
rosa_multiflora	Rmu_sc0000560.1_g000004
rosa_roxburghii	Rroxscaffold_7G00182150
rosa_rugosa	Rorug06G0181400 Rorug06G0181500
rosa_samantha	Rh6AG294300 Rh6BG297400 Rh6CG297800 Rh6DG289700
rosa_wichuraiana	Rw6G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	6 cut(s)	147, 153, 161, 248, 251, 344
AclI	AACGTT	1 cut(s)	635
AclWI	GGATC	1 cut(s)	754
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	2 cut(s)	411, 456
AcyI	GRCGYC	1 cut(s)	532
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	45
AhlI	ACTAGT	1 cut(s)	539
AjnI	CCWGG	1 cut(s)	651
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	4 cut(s)	118, 124, 389, 615
AluI	AGCT	4 cut(s)	118, 124, 389, 615
Alw21I	GWGCWC	2 cut(s)	120, 126
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	754
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	4 cut(s)	162, 172, 204, 374
ApeKI	GCWGC	3 cut(s)	254, 341, 612
ApoI	RAATTY	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	400
AspS9I	GGNCC	3 cut(s)	163, 173, 656
AsuHPI	GGTGA	3 cut(s)	470, 571, 797
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	2 cut(s)	120, 126
BbsI	GAAGAC	3 cut(s)	75, 270, 780
Bbv12I	GWGCWC	2 cut(s)	120, 126
BbvI	GCAGC	3 cut(s)	241, 353, 624
BccI	CCATC	3 cut(s)	366, 563, 737
BceAI	ACGGC	2 cut(s)	219, 324
BciT130I	CCWGG	1 cut(s)	653
BcoDI	GTCTC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	4 cut(s)	192, 540, 626, 740
BisI	GCNGC	7 cut(s)	162, 249, 252, 255, 342, 345, 613
BlsI	GCNGC	7 cut(s)	163, 250, 253, 256, 343, 346, 614
Bme1390I	CCNGG	1 cut(s)	653
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	163, 173, 656
BmiI	GGNNCC	3 cut(s)	355, 657, 658
BmrFI	CCNGG	1 cut(s)	653
BmrI	ACTGGG	2 cut(s)	39, 170
BmsI	GCATC	1 cut(s)	783
BmuI	ACTGGG	2 cut(s)	39, 170
BpiI	GAAGAC	3 cut(s)	75, 270, 780
BplI	GAGNNNNNCTC	2 cut(s)	519, 551
BpmI	CTGGAG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	532
BsaJI	CCNNGG	4 cut(s)	207, 405, 652, 812
BsaXI	ACNNNNNCTCC	2 cut(s)	632, 662
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	3 cut(s)	34, 176, 794
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	4 cut(s)	207, 405, 652, 812
BseGI	GGATG	5 cut(s)	377, 574, 798, 811, 825
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	4 cut(s)	78, 105, 128, 855
BseNI	ACTGG	3 cut(s)	34, 176, 794
BseRI	GAGGAG	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	241, 353, 624
BseYI	CCCAGC	2 cut(s)	165, 311
BsgI	GTGCAG	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	4 cut(s)	164, 174, 206, 376
BshNI	GGYRCC	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	2 cut(s)	120, 126
BsiHKCI	CYCGRG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	328, 669
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	328, 669
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	4 cut(s)	164, 174, 206, 376
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	120, 126
Bsp143I	GATC	1 cut(s)	746
BspACI	CCGC	6 cut(s)	147, 153, 161, 248, 251, 344
BspANI	GGCC	4 cut(s)	164, 174, 206, 376
BspCNI	CTCAG	4 cut(s)	79, 106, 129, 856
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	3 cut(s)	355, 657, 658
BspPI	GGATC	1 cut(s)	754
BspT107I	GGYRCC	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	34, 176, 794
BssECI	CCNNGG	4 cut(s)	207, 405, 652, 812
BssMI	GATC	1 cut(s)	746
BssNI	GRCGYC	1 cut(s)	532
BssT1I	CCWWGG	3 cut(s)	207, 405, 812
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	833
BstACI	GRCGYC	1 cut(s)	532
BstDEI	CTNAG	8 cut(s)	87, 114, 137, 237, 318, 519, 845, 864
BstF5I	GGATG	5 cut(s)	377, 574, 798, 811, 825
BstKTI	GATC	1 cut(s)	749
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	746
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 353
BstNI	CCWGG	1 cut(s)	653
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	241, 353, 624
BstV2I	GAAGAC	3 cut(s)	75, 270, 780
BsuRI	GGCC	4 cut(s)	164, 174, 206, 376
BtsCI	GGATG	5 cut(s)	377, 574, 798, 811, 825
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	301, 432
CaiI	CAGNNNCTG	1 cut(s)	434
CciI	TCATGA	1 cut(s)	852
Cfr13I	GGNCC	3 cut(s)	163, 173, 656
CseI	GACGC	1 cut(s)	540
CviAII	CATG	3 cut(s)	46, 701, 853
DdeI	CTNAG	8 cut(s)	87, 114, 137, 237, 318, 519, 845, 864
DpnI	GATC	1 cut(s)	748
DpnII	GATC	1 cut(s)	746
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	833
EarI	CTCTTC	1 cut(s)	833
Ecl136II	GAGCTC	2 cut(s)	118, 124
Eco130I	CCWWGG	3 cut(s)	207, 405, 812
Eco24I	GRGCYC	2 cut(s)	120, 126
Eco47I	GGWCC	1 cut(s)	656
Eco53kI	GAGCTC	2 cut(s)	118, 124
Eco57I	CTGAAG	2 cut(s)	411, 456
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	2 cut(s)	118, 124
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	3 cut(s)	207, 405, 812
EcoT38I	GRGCYC	2 cut(s)	120, 126
ErhI	CCWWGG	3 cut(s)	207, 405, 812
FaeI	CATG	3 cut(s)	49, 704, 856
FaqI	GGGAC	2 cut(s)	328, 669
FatI	CATG	3 cut(s)	45, 700, 852
FauI	CCCGC	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	7 cut(s)	162, 249, 252, 255, 342, 345, 613
FokI	GGATG	5 cut(s)	384, 581, 805, 818, 832
FriOI	GRGCYC	2 cut(s)	120, 126
Fsp4HI	GCNGC	7 cut(s)	162, 249, 252, 255, 342, 345, 613
FspBI	CTAG	4 cut(s)	192, 540, 626, 740
GluI	GCNGC	7 cut(s)	162, 249, 252, 255, 342, 345, 613
GsaI	CCCAGC	2 cut(s)	169, 315
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	4 cut(s)	164, 174, 206, 376
HgaI	GACGC	1 cut(s)	540
Hin1I	GRCGYC	1 cut(s)	532
Hin1II	CATG	3 cut(s)	49, 704, 856
HincII	GTYRAC	2 cut(s)	51, 595
HindII	GTYRAC	2 cut(s)	51, 595
HinfI	GANTC	6 cut(s)	92, 110, 139, 196, 332, 849
HpaI	GTTAAC	1 cut(s)	595
HphI	GGTGA	3 cut(s)	470, 571, 797
Hpy166II	GTNNAC	2 cut(s)	51, 595
Hpy188I	TCNGA	7 cut(s)	88, 115, 201, 386, 451, 584, 865
Hpy188III	TCNNGA	3 cut(s)	15, 500, 853
Hpy8I	GTNNAC	2 cut(s)	51, 595
Hpy99I	CGWCG	5 cut(s)	247, 268, 271, 274, 277
HpyAV	CCTTC	6 cut(s)	151, 475, 550, 579, 583, 776
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	2 cut(s)	635, 682
HpyCH4V	TGCA	6 cut(s)	4, 465, 512, 605, 665, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 353
HpyF3I	CTNAG	8 cut(s)	87, 114, 137, 237, 318, 519, 845, 864
HpySE526I	ACGT	2 cut(s)	635, 682
Hsp92I	GRCGYC	1 cut(s)	532
Hsp92II	CATG	3 cut(s)	49, 704, 856
KflI	GGGWCCC	1 cut(s)	656
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	746
Lsp1109I	GCAGC	3 cut(s)	241, 353, 624
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	4 cut(s)	192, 540, 626, 740
MaeII	ACGT	2 cut(s)	635, 682
MaeIII	GTNAC	3 cut(s)	37, 98, 785
MalI	GATC	1 cut(s)	748
MboI	GATC	1 cut(s)	746
MboII	GAAGA	8 cut(s)	75, 252, 270, 273, 276, 417, 785, 850
MhlI	GDGCHC	2 cut(s)	120, 126
MluCI	AATT	3 cut(s)	184, 400, 674
MlyI	GAGTC	2 cut(s)	119, 148
MmeI	TCCRAC	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	2 cut(s)	444, 594
MspA1I	CMGCKG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	653
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	2 cut(s)	254, 353
NdeII	GATC	1 cut(s)	746
NlaIII	CATG	3 cut(s)	49, 704, 856
NlaIV	GGNNCC	3 cut(s)	355, 657, 658
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	2 cut(s)	37, 785
NspI	RCATGY	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	852
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	2 cut(s)	269, 272
PctI	GAATGC	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	4 cut(s)	92, 196, 332, 849
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	7 cut(s)	163, 250, 253, 256, 343, 346, 614
PleI	GAGTC	2 cut(s)	118, 147
PpsI	GAGTC	2 cut(s)	118, 147
PpuMI	RGGWCCY	1 cut(s)	656
PscI	ACATGT	1 cut(s)	45
Psp124BI	GAGCTC	2 cut(s)	120, 126
Psp1406I	AACGTT	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	651
PspFI	CCCAGC	2 cut(s)	165, 311
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	3 cut(s)	355, 657, 658
PspPI	GGNCC	3 cut(s)	163, 173, 656
PspPPI	RGGWCCY	1 cut(s)	656
PspXI	VCTCGAGB	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	434
PsyI	GACNNNGTC	1 cut(s)	55
SacI	GAGCTC	2 cut(s)	120, 126
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	444, 594
SatI	GCNGC	7 cut(s)	162, 249, 252, 255, 342, 345, 613
Sau3AI	GATC	1 cut(s)	746
Sau96I	GGNCC	3 cut(s)	163, 173, 656
SchI	GAGTC	2 cut(s)	119, 148
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	2 cut(s)	120, 126
SfaNI	GCATC	1 cut(s)	783
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	656
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	3 cut(s)	184, 400, 674
SsiI	CCGC	6 cut(s)	147, 153, 161, 248, 251, 344
SspMI	CTAG	4 cut(s)	192, 540, 626, 740
SstI	GAGCTC	2 cut(s)	120, 126
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	3 cut(s)	207, 405, 812
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	2 cut(s)	638, 685
TaqI	TCGA	2 cut(s)	50, 120
TasI	AATT	3 cut(s)	184, 400, 674
TauI	GCSGC	4 cut(s)	164, 251, 254, 347
TfiI	GAWTC	4 cut(s)	92, 196, 332, 849
Tru1I	TTAA	2 cut(s)	444, 594
Tru9I	TTAA	2 cut(s)	444, 594
TscAI	CASTG	2 cut(s)	301, 439
TseFI	GTSAC	2 cut(s)	37, 785
TseI	GCWGC	3 cut(s)	254, 341, 612
Tsp45I	GTSAC	2 cut(s)	37, 785
TspDTI	ATGAA	4 cut(s)	401, 413, 633, 786
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	301, 439
Tth111I	GACNNNGTC	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	1 cut(s)	400
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	4 cut(s)	192, 540, 626, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.