Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009009

Physical Location & Seq

Genomic Coordinates Reverse (-)

18523185 .. 18525212

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGAGTGGAGGTTCTGCAAGTGGGTCGTTGACTAAGTCAACGGTGTCCAGGGAGGAGAATTTTGCCATGTCTTCTGAGGACTCTTCTACCCCTGAGGATTCTGGGCTCGAGCTCTGTCTTGGGCTGAGCCTTGGTGGTGGTGGAGGGAAGGACCAGCAGGGGCAAAGGGGTCACTTTGCGAGGATCTTGACTGCTAAGGATTTTCCTTCTGTGGGGTTTTCTTCTTCGTCGGCTTCCGAGTCGTCGTCTTCTACTTCTTCGTTGAGCAGCGGTAATGTTGCTGCTGGAACCAAGAGAAGTGCTGATTCTGTGGCTGCTGCTAATGGCGCCAGTCAGGTTGTTGGATGGCCTCCTATCAGAGCTTATAGATTGAATAGTTTGGTTCTCCAAGCGAAATCTTCATCTACTGAAGGACTTAATTCAGTAAATGAGAAAAGTGAGTGCAAGACCGGTGCGGGGAAGGTTAACAATGGAGGTCACAAGTCCAATGGAAATGCTAAGGAGATAGGGCAGCAGAGGGGTTCCCTGTTTGTGAAGGTGAATATGGACGGGATTCCTATCGGGCGAAAGGTTAATCTCAGTGCGCATAGTTCCTATGAAGCGCTAGCACAAAAATTGGAGGATATGTTTGGGCCCTCGACACATGGTTCAGGTGGTCAGGAGATGGAAGGAGCAACAAGACCCTCAAAGTTGCTGGATGGATCATTTGAGTTTGCGCTCACTTATGAAGATAAAGACGGAGACTGGATGCTTGTGGGAGATGTTCCTTGGGAGATGTTTCTTGGTACTGTCAAGAGGTTAAGGATTATGAGGACATCTGAGGCTAATGGACTTGCTCCCCTGTTACAGGAAAAGAATGTGAGGCAAAGATGTAAGCCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

296

Amino Acids

30.91

Weight (kDa)

6.92

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28640 AT4G28640 AT4G28640
fragaria_vesca	FvH4_2g20500 FvH4_2g20500
malus_domestica	MD05G1188800.v1.1 MD10G1176400.v1.1
prunus_persica	Prupe.8G215400_v2.0.a1 Prupe.8G215400_v2.0.a1
pyrus_communis	pycom05g17340 pycom10g15230
rosa_chinensis	RchiOBHm_Chr6g0286601
rosa_laevigata	RLG00000012555
rosa_multiflora	Rmu_sc0000560.1_g000004
rosa_roxburghii	Rroxscaffold_7G00182150
rosa_rugosa	Rorug06G0181400 Rorug06G0181500
rosa_samantha	Rh6AG294300 Rh6BG297400 Rh6CG297800 Rh6DG289700
rosa_wichuraiana	Rw6G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	588
AccB1I	GGYRCC	1 cut(s)	329
AciI	CCGC	2 cut(s)	273, 458
AclWI	GGATC	2 cut(s)	194, 712
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	790
AfeI	AGCGCT	1 cut(s)	606
AfiI	CCNNNNNNNGG	3 cut(s)	215, 459, 850
AgeI	ACCGGT	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	115, 365
AluI	AGCT	2 cut(s)	115, 365
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	194, 712
Ama87I	CYCGRG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	606
AoxI	GGCC	2 cut(s)	350, 635
ApaI	GGGCCC	1 cut(s)	639
ApeKI	GCWGC	5 cut(s)	270, 284, 317, 320, 514
ApoI	RAATTY	1 cut(s)	61
AsiGI	ACCGGT	1 cut(s)	452
AspLEI	GCGC	4 cut(s)	332, 589, 607, 721
AspS9I	GGNCC	3 cut(s)	154, 635, 636
AsuHPI	GGTGA	1 cut(s)	553
AsuNHI	GCTAGC	1 cut(s)	607
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	154
AxyI	CCTNAGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	639
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	3 cut(s)	111, 117, 639
BbsI	GAAGAC	2 cut(s)	66, 243
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	5 cut(s)	271, 282, 304, 307, 526
BccI	CCATC	3 cut(s)	342, 661, 695
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	2 cut(s)	608, 886
BfoI	RGCGCY	2 cut(s)	333, 608
BisI	GCNGC	5 cut(s)	271, 285, 318, 321, 515
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	5 cut(s)	272, 286, 319, 322, 516
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	154, 635, 636
BmiI	GGNNCC	4 cut(s)	292, 331, 526, 637
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	741
BmtI	GCTAGC	1 cut(s)	611
BpiI	GAAGAC	2 cut(s)	66, 243
Bpu10I	CCTNAGC	2 cut(s)	198, 501
Bpu1102I	GCTNAGC	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	51, 133, 770
BsaWI	WCCGGW	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 459, 850
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	2 cut(s)	333, 752
Bse21I	CCTNAGG	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	3 cut(s)	51, 133, 770
BseGI	GGATG	3 cut(s)	353, 706, 756
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	3 cut(s)	215, 459, 850
BseMII	CTCAG	5 cut(s)	69, 87, 119, 595, 813
BseNI	ACTGG	2 cut(s)	333, 752
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	639
BseXI	GCAGC	5 cut(s)	271, 282, 304, 307, 526
BshFI	GGCC	2 cut(s)	352, 637
BshNI	GGYRCC	1 cut(s)	329
BshTI	ACCGGT	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	3 cut(s)	215, 459, 850
BsmAI	GTCTC	1 cut(s)	738
BsnI	GGCC	2 cut(s)	352, 637
BsoBI	CYCGRG	1 cut(s)	110
Bsp120I	GGGCCC	1 cut(s)	635
Bsp1286I	GDGCHC	3 cut(s)	111, 117, 639
Bsp143I	GATC	2 cut(s)	186, 704
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	2 cut(s)	273, 458
BspANI	GGCC	2 cut(s)	352, 637
BspCNI	CTCAG	5 cut(s)	70, 88, 120, 594, 814
BspLI	GGNNCC	4 cut(s)	292, 331, 526, 637
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	194, 712
BspT107I	GGYRCC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	333, 752
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	3 cut(s)	51, 133, 770
BssMI	GATC	2 cut(s)	186, 704
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	133, 770
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	46, 793
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	8 cut(s)	36, 78, 96, 128, 198, 501, 581, 822
BstENI	CCTNNNNNAGG	1 cut(s)	848
BstF5I	GGATG	3 cut(s)	353, 706, 756
BstH2I	RGCGCY	2 cut(s)	333, 608
BstHHI	GCGC	4 cut(s)	332, 589, 607, 721
BstKTI	GATC	2 cut(s)	189, 707
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	2 cut(s)	186, 704
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	639
BstV1I	GCAGC	5 cut(s)	271, 282, 304, 307, 526
BstV2I	GAAGAC	2 cut(s)	66, 243
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	352, 637
BtsCI	GGATG	3 cut(s)	353, 706, 756
BtsIMutI	CAGTG	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	4 cut(s)	332, 589, 607, 721
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	3 cut(s)	154, 635, 636
Csp6I	GTAC	1 cut(s)	789
CspAI	ACCGGT	1 cut(s)	452
CviAII	CATG	2 cut(s)	70, 647
CviQI	GTAC	1 cut(s)	789
DdeI	CTNAG	8 cut(s)	36, 78, 96, 128, 198, 501, 581, 822
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	2 cut(s)	188, 706
DpnII	GATC	2 cut(s)	186, 704
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	133, 770
Eco24I	GRGCYC	3 cut(s)	111, 117, 639
Eco47I	GGWCC	1 cut(s)	154
Eco47III	AGCGCT	1 cut(s)	606
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	2 cut(s)	133, 770
EcoT38I	GRGCYC	3 cut(s)	111, 117, 639
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	2 cut(s)	133, 770
FaeI	CATG	2 cut(s)	73, 650
FaiI	YATR	9 cut(s)	71, 369, 548, 591, 600, 629, 648, 729, 812
FatI	CATG	2 cut(s)	69, 646
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	5 cut(s)	271, 285, 318, 321, 515
FokI	GGATG	3 cut(s)	360, 713, 763
FriOI	GRGCYC	3 cut(s)	111, 117, 639
Fsp4HI	GCNGC	5 cut(s)	271, 285, 318, 321, 515
FspAI	RTGCGCAY	1 cut(s)	588
FspBI	CTAG	2 cut(s)	608, 886
FspI	TGCGCA	1 cut(s)	588
GlaI	GCGC	4 cut(s)	331, 588, 606, 720
GluI	GCNGC	5 cut(s)	271, 285, 318, 321, 515
HaeII	RGCGCY	2 cut(s)	333, 608
HaeIII	GGCC	2 cut(s)	352, 637
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	4 cut(s)	332, 589, 607, 721
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	73, 650
Hin6I	GCGC	4 cut(s)	330, 587, 605, 719
HinP1I	GCGC	4 cut(s)	330, 587, 605, 719
HincII	GTYRAC	3 cut(s)	33, 42, 469
HindII	GTYRAC	3 cut(s)	33, 42, 469
HinfI	GANTC	5 cut(s)	83, 101, 242, 308, 556
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	3 cut(s)	33, 42, 469
Hpy188I	TCNGA	4 cut(s)	79, 241, 362, 823
Hpy188III	TCNNGA	3 cut(s)	190, 662, 796
Hpy8I	GTNNAC	3 cut(s)	33, 42, 469
Hpy99I	CGWCG	2 cut(s)	235, 250
HpyAV	CCTTC	6 cut(s)	145, 219, 407, 457, 532, 665
HpyCH4III	ACNGT	2 cut(s)	46, 793
HpyCH4V	TGCA	2 cut(s)	20, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	8 cut(s)	36, 78, 96, 128, 198, 501, 581, 822
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	73, 650
HspAI	GCGC	4 cut(s)	330, 587, 605, 719
KasI	GGCGCC	1 cut(s)	329
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	186, 704
LmnI	GCTCC	2 cut(s)	674, 844
Lsp1109I	GCAGC	5 cut(s)	271, 282, 304, 307, 526
LweI	GCATC	1 cut(s)	741
MaeI	CTAG	2 cut(s)	608, 886
MaeIII	GTNAC	3 cut(s)	173, 479, 846
MalI	GATC	2 cut(s)	188, 706
MboI	GATC	2 cut(s)	186, 704
MboII	GAAGA	8 cut(s)	66, 78, 216, 219, 243, 252, 393, 743
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	3 cut(s)	111, 117, 639
MluCI	AATT	3 cut(s)	61, 421, 617
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	2 cut(s)	77, 251
MmeI	TCCRAC	1 cut(s)	325
MseI	TTAA	4 cut(s)	420, 468, 576, 803
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	329
NarI	GGCGCC	1 cut(s)	330
NdeII	GATC	2 cut(s)	186, 704
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	2 cut(s)	73, 650
NlaIV	GGNNCC	4 cut(s)	292, 331, 526, 637
NmuCI	GTSAC	2 cut(s)	173, 479
NsbI	TGCGCA	1 cut(s)	588
PaeR7I	CTCGAG	1 cut(s)	110
PfeI	GAWTC	3 cut(s)	101, 308, 556
PflFI	GACNNNGTC	1 cut(s)	37
PinAI	ACCGGT	1 cut(s)	452
PkrI	GCNGC	5 cut(s)	272, 286, 319, 322, 516
PleI	GAGTC	2 cut(s)	77, 250
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	2 cut(s)	77, 250
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	4 cut(s)	292, 331, 526, 637
PspOMI	GGGCCC	1 cut(s)	635
PspPI	GGNCC	3 cut(s)	154, 635, 636
PspXI	VCTCGAGB	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	186
PsyI	GACNNNGTC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	790
RsaNI	GTAC	1 cut(s)	789
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	420, 468, 576, 803
SatI	GCNGC	5 cut(s)	271, 285, 318, 321, 515
Sau3AI	GATC	2 cut(s)	186, 704
Sau96I	GGNCC	3 cut(s)	154, 635, 636
SchI	GAGTC	2 cut(s)	77, 251
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	3 cut(s)	111, 117, 639
SfaNI	GCATC	1 cut(s)	741
SfoI	GGCGCC	1 cut(s)	331
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	61, 421, 617
SsiI	CCGC	2 cut(s)	273, 458
SspDI	GGCGCC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	608, 886
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	2 cut(s)	133, 770
TaaI	ACNGT	2 cut(s)	46, 793
TaqI	TCGA	2 cut(s)	111, 641
TasI	AATT	3 cut(s)	61, 421, 617
TfiI	GAWTC	3 cut(s)	101, 308, 556
Tru1I	TTAA	4 cut(s)	420, 468, 576, 803
Tru9I	TTAA	4 cut(s)	420, 468, 576, 803
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	2 cut(s)	173, 479
TseI	GCWGC	5 cut(s)	270, 284, 317, 320, 514
Tsp45I	GTSAC	2 cut(s)	173, 479
TspDTI	ATGAA	3 cut(s)	393, 615, 744
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	1 cut(s)	589
Tth111I	GACNNNGTC	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	154
XagI	CCTNNNNNAGG	1 cut(s)	848
XapI	RAATTY	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	2 cut(s)	608, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.