Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28640 AT4G28640 AT4G28640 |
| fragaria_vesca | FvH4_2g20500 FvH4_2g20500 |
| malus_domestica | MD05G1188800.v1.1 MD10G1176400.v1.1 |
| prunus_persica | Prupe.8G215400_v2.0.a1 Prupe.8G215400_v2.0.a1 |
| pyrus_communis | pycom05g17340 pycom10g15230 |
| rosa_chinensis | RchiOBHm_Chr6g0286601 |
| rosa_laevigata | RLG00000012555 |
| rosa_multiflora | Rmu_sc0000560.1_g000004 |
| rosa_roxburghii | Rroxscaffold_7G00182150 |
| rosa_rugosa | Rorug06G0181400 Rorug06G0181500 |
| rosa_samantha | Rh6AG294300 Rh6BG297400 Rh6CG297800 Rh6DG289700 |
| rosa_wichuraiana | Rw6G025320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 43 |
| AclWI | GGATC | 3 cut(s) | 4, 15, 17 |
| AcsI | RAATTY | 1 cut(s) | 151 |
| AfaI | GTAC | 1 cut(s) | 133 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 128 |
| AjnI | CCWGG | 1 cut(s) | 90 |
| Alw26I | GTCTC | 4 cut(s) | 188, 194, 200, 212 |
| AlwI | GGATC | 3 cut(s) | 4, 15, 17 |
| AoxI | GGCC | 2 cut(s) | 88, 107 |
| ApoI | RAATTY | 1 cut(s) | 151 |
| AspS9I | GGNCC | 1 cut(s) | 50 |
| AsuC2I | CCSGG | 1 cut(s) | 48 |
| AsuHPI | GGTGA | 1 cut(s) | 22 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| BamHI | GGATCC | 1 cut(s) | 9 |
| BciT130I | CCWGG | 1 cut(s) | 92 |
| BcnI | CCSGG | 1 cut(s) | 48 |
| BcoDI | GTCTC | 4 cut(s) | 188, 194, 200, 212 |
| Bme1390I | CCNGG | 2 cut(s) | 48, 92 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmgT120I | GGNCC | 1 cut(s) | 50 |
| BmiI | GGNNCC | 1 cut(s) | 11 |
| BmrFI | CCNGG | 2 cut(s) | 48, 92 |
| BmsI | GCATC | 1 cut(s) | 60 |
| BpuEI | CTTGAG | 1 cut(s) | 188 |
| BpuMI | CCSGG | 1 cut(s) | 48 |
| BsaI | GGTCTC | 4 cut(s) | 188, 194, 200, 212 |
| BsaJI | CCNNGG | 2 cut(s) | 46, 91 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 128 |
| Bse1I | ACTGG | 2 cut(s) | 11, 110 |
| Bse3DI | GCAATG | 1 cut(s) | 73 |
| BseBI | CCWGG | 1 cut(s) | 92 |
| BseDI | CCNNGG | 2 cut(s) | 46, 91 |
| BseGI | GGATG | 1 cut(s) | 36 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 128 |
| BseMI | GCAATG | 1 cut(s) | 73 |
| BseNI | ACTGG | 2 cut(s) | 11, 110 |
| BshFI | GGCC | 2 cut(s) | 90, 109 |
| BsiSI | CCGG | 1 cut(s) | 48 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 128 |
| BsmAI | GTCTC | 4 cut(s) | 188, 194, 200, 212 |
| BsnI | GGCC | 2 cut(s) | 90, 109 |
| Bso31I | GGTCTC | 4 cut(s) | 188, 194, 200, 212 |
| Bsp143I | GATC | 3 cut(s) | 9, 20, 100 |
| BspACI | CCGC | 1 cut(s) | 43 |
| BspANI | GGCC | 2 cut(s) | 90, 109 |
| BspLI | GGNNCC | 1 cut(s) | 11 |
| BspPI | GGATC | 3 cut(s) | 4, 15, 17 |
| BspTNI | GGTCTC | 4 cut(s) | 188, 194, 200, 212 |
| BsrDI | GCAATG | 1 cut(s) | 73 |
| BsrI | ACTGG | 2 cut(s) | 11, 110 |
| BssECI | CCNNGG | 2 cut(s) | 46, 91 |
| BssMI | GATC | 3 cut(s) | 9, 20, 100 |
| Bst2UI | CCWGG | 1 cut(s) | 92 |
| Bst4CI | ACNGT | 1 cut(s) | 223 |
| BstF5I | GGATG | 1 cut(s) | 36 |
| BstKTI | GATC | 3 cut(s) | 12, 23, 103 |
| BstMAI | GTCTC | 4 cut(s) | 188, 194, 200, 212 |
| BstMBI | GATC | 3 cut(s) | 9, 20, 100 |
| BstNI | CCWGG | 1 cut(s) | 92 |
| BstSCI | CCNGG | 2 cut(s) | 46, 90 |
| BstX2I | RGATCY | 2 cut(s) | 9, 20 |
| BstYI | RGATCY | 2 cut(s) | 9, 20 |
| BsuRI | GGCC | 2 cut(s) | 90, 109 |
| BtsCI | GGATG | 1 cut(s) | 36 |
| BtsIMutI | CAGTG | 1 cut(s) | 103 |
| Cfr13I | GGNCC | 1 cut(s) | 50 |
| Csp6I | GTAC | 1 cut(s) | 132 |
| CviJI | RGCY | 4 cut(s) | 84, 90, 109, 172 |
| CviKI_1 | RGCY | 4 cut(s) | 84, 90, 109, 172 |
| CviQI | GTAC | 1 cut(s) | 132 |
| DpnI | GATC | 3 cut(s) | 11, 22, 102 |
| DpnII | GATC | 3 cut(s) | 9, 20, 100 |
| EciI | GGCGGA | 1 cut(s) | 32 |
| Eco31I | GGTCTC | 4 cut(s) | 188, 194, 200, 212 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| EcoRII | CCWGG | 1 cut(s) | 90 |
| EcoT22I | ATGCAT | 1 cut(s) | 75 |
| FaiI | YATR | 2 cut(s) | 144, 161 |
| FokI | GGATG | 1 cut(s) | 23 |
| HaeIII | GGCC | 2 cut(s) | 90, 109 |
| HapII | CCGG | 1 cut(s) | 48 |
| HinfI | GANTC | 1 cut(s) | 182 |
| HpaII | CCGG | 1 cut(s) | 48 |
| HphI | GGTGA | 1 cut(s) | 22 |
| Hpy188I | TCNGA | 2 cut(s) | 181, 187 |
| Hpy188III | TCNNGA | 1 cut(s) | 167 |
| HpyCH4III | ACNGT | 1 cut(s) | 223 |
| HpyCH4V | TGCA | 2 cut(s) | 73, 78 |
| Kzo9I | GATC | 3 cut(s) | 9, 20, 100 |
| LpnPI | CCDG | 7 cut(s) | 61, 66, 77, 91, 104, 123, 135 |
| LweI | GCATC | 1 cut(s) | 60 |
| MalI | GATC | 3 cut(s) | 11, 22, 102 |
| MboI | GATC | 3 cut(s) | 9, 20, 100 |
| MflI | RGATCY | 2 cut(s) | 9, 20 |
| MluCI | AATT | 2 cut(s) | 151, 175 |
| MnlI | CCTC | 4 cut(s) | 23, 34, 50, 141 |
| Mph1103I | ATGCAT | 1 cut(s) | 75 |
| MspI | CCGG | 1 cut(s) | 48 |
| MspR9I | CCNGG | 2 cut(s) | 48, 92 |
| MvaI | CCWGG | 1 cut(s) | 92 |
| NciI | CCSGG | 1 cut(s) | 48 |
| NdeII | GATC | 3 cut(s) | 9, 20, 100 |
| NlaIV | GGNNCC | 1 cut(s) | 11 |
| NsiI | ATGCAT | 1 cut(s) | 75 |
| PfeI | GAWTC | 1 cut(s) | 182 |
| Psp6I | CCWGG | 1 cut(s) | 90 |
| PspGI | CCWGG | 1 cut(s) | 90 |
| PspN4I | GGNNCC | 1 cut(s) | 11 |
| PspPI | GGNCC | 1 cut(s) | 50 |
| PsuI | RGATCY | 2 cut(s) | 9, 20 |
| RsaI | GTAC | 1 cut(s) | 133 |
| RsaNI | GTAC | 1 cut(s) | 132 |
| Sau3AI | GATC | 3 cut(s) | 9, 20, 100 |
| Sau96I | GGNCC | 1 cut(s) | 50 |
| ScrFI | CCNGG | 2 cut(s) | 48, 92 |
| SetI | ASST | 1 cut(s) | 55 |
| SfaNI | GCATC | 1 cut(s) | 60 |
| SinI | GGWCC | 1 cut(s) | 50 |
| SmlI | CTYRAG | 1 cut(s) | 167 |
| SmoI | CTYRAG | 1 cut(s) | 167 |
| Sse9I | AATT | 2 cut(s) | 151, 175 |
| SsiI | CCGC | 1 cut(s) | 43 |
| StyD4I | CCNGG | 2 cut(s) | 46, 90 |
| TaaI | ACNGT | 1 cut(s) | 223 |
| TaqII | GACCGA | 2 cut(s) | 212, 218 |
| TasI | AATT | 2 cut(s) | 151, 175 |
| TfiI | GAWTC | 1 cut(s) | 182 |
| TscAI | CASTG | 1 cut(s) | 110 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 110 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| XapI | RAATTY | 1 cut(s) | 151 |
| Zsp2I | ATGCAT | 1 cut(s) | 75 |