Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000560.1

Orthogroup ID

OG0009009

Physical Location & Seq

Genomic Coordinates Reverse (-)

20779 .. 23501

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000560.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgcagggtttttctggaggtttaggaactgggtctgtgactaacatgtcgaccgtctccaaagatgagaactttgctatgtcttctgaggattcttgtagcccagatgagtctgacctcgagctctgtcttgggctgagtctcggcggtggcgggaaggcggcccagcaaggcccagttgggaattatgctaggattctgacggccaaggatttccgttatgtgggttctaactctaagtcggcggcggcggctgcttcttcgtcgtcgtcgtcgtcttcttcgttgagcagtgctaatgttacggctgggactaagaggagtgctgattctgtggcggccgctaatgctgccaatcaggttgtgggatggcctcctatcagagcttatagaatgaattccttggttcatcaagcaaaatcttcagccactgaagtatttaactcggagaaaggtgaatgccagattacttcagggaagggtaacattggtggtcaagaaaacaatgcaaatgctaaggagggaggacgcctcactagttccctgtttgtgaaggtgaatatggatggaagtccaatcggaaggaaggttaacctaactgcgcatagcagctatgaagccctagcacaaacattggaggatatgttccagggaccctctgcaaatgccaaattgatacgttctggtggtcaggagcatgatataatggtgggagaaactacaccctcaaagttgctagatggatcatttgattttgcactcacttatgaagacaaagagggcgactggatgcttgttggggatgttccttgggggatgtttctttgttctgtgaagaggctaagaatcatgaggacatctgaggctaatggacttgctccgaggctgcaggaaaggaatgcaaggcagagatgcgcgagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

307

Amino Acids

32.18

Weight (kDa)

6.34

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28640 AT4G28640 AT4G28640
fragaria_vesca	FvH4_2g20500 FvH4_2g20500
malus_domestica	MD05G1188800.v1.1 MD10G1176400.v1.1
prunus_persica	Prupe.8G215400_v2.0.a1 Prupe.8G215400_v2.0.a1
pyrus_communis	pycom05g17340 pycom10g15230
rosa_chinensis	RchiOBHm_Chr6g0286601
rosa_laevigata	RLG00000012555
rosa_multiflora	Rmu_sc0000560.1_g000004
rosa_roxburghii	Rroxscaffold_7G00182150
rosa_rugosa	Rorug06G0181400 Rorug06G0181500
rosa_samantha	Rh6AG294300 Rh6BG297400 Rh6CG297800 Rh6DG289700
rosa_wichuraiana	Rw6G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
Acc16I	TGCGCA	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	1 cut(s)	917
AciI	CCGC	8 cut(s)	147, 153, 161, 245, 248, 251, 338, 342
AclWI	GGATC	1 cut(s)	751
AcoI	YGGCCR	2 cut(s)	204, 339
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	3 cut(s)	408, 453, 456
AcyI	GRCGYC	1 cut(s)	529
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	45
AhlI	ACTAGT	1 cut(s)	536
AjnI	CCWGG	1 cut(s)	648
AloI	GAACNNNNNNTCC	2 cut(s)	629, 661
AluBI	AGCT	4 cut(s)	124, 386, 612, 921
AluI	AGCT	4 cut(s)	124, 386, 612, 921
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	61, 146
AlwI	GGATC	1 cut(s)	751
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	5 cut(s)	162, 172, 204, 339, 371
ApeKI	GCWGC	4 cut(s)	254, 350, 609, 886
ApoI	RAATTY	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	2 cut(s)	604, 917
AspS9I	GGNCC	3 cut(s)	163, 173, 653
AsuHPI	GGTGA	2 cut(s)	467, 568
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	3 cut(s)	75, 270, 777
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	241, 337, 621, 873
BccI	CCATC	3 cut(s)	363, 560, 734
BceAI	ACGGC	2 cut(s)	219, 321
BciT130I	CCWGG	1 cut(s)	650
BcoDI	GTCTC	2 cut(s)	61, 146
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	4 cut(s)	192, 537, 623, 737
BfmI	CTRYAG	1 cut(s)	887
Bme1390I	CCNGG	1 cut(s)	650
Bme18I	GGWCC	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	163, 173, 653
BmiI	GGNNCC	2 cut(s)	654, 655
BmrFI	CCNGG	1 cut(s)	650
BmrI	ACTGGG	2 cut(s)	39, 170
BmsI	GCATC	2 cut(s)	780, 902
BmuI	ACTGGG	2 cut(s)	39, 170
BpiI	GAAGAC	3 cut(s)	75, 270, 777
BplI	GAGNNNNNCTC	2 cut(s)	516, 548
BpmI	CTGGAG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	529
BsaJI	CCNNGG	5 cut(s)	207, 402, 649, 809, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	3 cut(s)	34, 176, 791
BseBI	CCWGG	1 cut(s)	650
BseDI	CCNNGG	5 cut(s)	207, 402, 649, 809, 881
BseGI	GGATG	5 cut(s)	374, 571, 795, 808, 822
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	3 cut(s)	78, 128, 852
BseNI	ACTGG	3 cut(s)	34, 176, 791
BseRI	GAGGAG	1 cut(s)	334
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	4 cut(s)	241, 337, 621, 873
BseYI	CCCAGC	2 cut(s)	165, 308
Bsh1236I	CGCG	1 cut(s)	917
Bsh1285I	CGRYCG	2 cut(s)	54, 342
BshFI	GGCC	5 cut(s)	164, 174, 206, 341, 373
BsiEI	CGRYCG	2 cut(s)	54, 342
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	325, 666
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	61, 146
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	325, 666
BsmI	GAATGC	2 cut(s)	464, 904
BsnI	GGCC	5 cut(s)	164, 174, 206, 341, 373
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	743
BspACI	CCGC	8 cut(s)	147, 153, 161, 245, 248, 251, 338, 342
BspANI	GGCC	5 cut(s)	164, 174, 206, 341, 373
BspCNI	CTCAG	3 cut(s)	79, 129, 853
BspFNI	CGCG	1 cut(s)	917
BspHI	TCATGA	1 cut(s)	849
BspLI	GGNNCC	2 cut(s)	654, 655
BspMAI	CTGCAG	1 cut(s)	891
BspPI	GGATC	1 cut(s)	751
BsrI	ACTGG	3 cut(s)	34, 176, 791
BssECI	CCNNGG	5 cut(s)	207, 402, 649, 809, 881
BssMI	GATC	1 cut(s)	743
BssNI	GRCGYC	1 cut(s)	529
BssT1I	CCWWGG	3 cut(s)	207, 402, 809
Bst2UI	CCWGG	1 cut(s)	650
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	830
BstACI	GRCGYC	1 cut(s)	529
BstC8I	GCNNGC	1 cut(s)	919
BstDEI	CTNAG	7 cut(s)	87, 137, 237, 315, 516, 842, 861
BstF5I	GGATG	5 cut(s)	374, 571, 795, 808, 822
BstFNI	CGCG	1 cut(s)	917
BstHHI	GCGC	2 cut(s)	604, 917
BstKTI	GATC	1 cut(s)	746
BstMAI	GTCTC	2 cut(s)	61, 146
BstMBI	GATC	1 cut(s)	743
BstMCI	CGRYCG	2 cut(s)	54, 342
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 254, 347, 350
BstNI	CCWGG	1 cut(s)	650
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	648
BstSFI	CTRYAG	1 cut(s)	887
BstUI	CGCG	1 cut(s)	917
BstV1I	GCAGC	4 cut(s)	241, 337, 621, 873
BstV2I	GAAGAC	3 cut(s)	75, 270, 777
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	5 cut(s)	164, 174, 206, 341, 373
BtsCI	GGATG	5 cut(s)	374, 571, 795, 808, 822
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	298, 429
Cac8I	GCNNGC	1 cut(s)	919
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	849
CciNI	GCGGCCGC	1 cut(s)	339
CfoI	GCGC	2 cut(s)	604, 917
Cfr13I	GGNCC	3 cut(s)	163, 173, 653
CseI	GACGC	1 cut(s)	537
CviAII	CATG	3 cut(s)	46, 698, 850
DdeI	CTNAG	7 cut(s)	87, 137, 237, 315, 516, 842, 861
DpnI	GATC	1 cut(s)	745
DpnII	GATC	1 cut(s)	743
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	2 cut(s)	204, 339
EagI	CGGCCG	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	830
EarI	CTCTTC	1 cut(s)	830
Ecl136II	GAGCTC	1 cut(s)	124
EclXI	CGGCCG	1 cut(s)	339
Eco130I	CCWWGG	3 cut(s)	207, 402, 809
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	653
Eco52I	CGGCCG	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	3 cut(s)	408, 453, 456
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	653
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	648
EcoT14I	CCWWGG	3 cut(s)	207, 402, 809
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	3 cut(s)	207, 402, 809
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	3 cut(s)	49, 701, 853
FaqI	GGGAC	2 cut(s)	325, 666
FatI	CATG	3 cut(s)	45, 697, 849
FauI	CCCGC	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	50
FokI	GGATG	5 cut(s)	381, 578, 802, 815, 829
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	4 cut(s)	192, 537, 623, 737
FspI	TGCGCA	1 cut(s)	603
GlaI	GCGC	2 cut(s)	603, 916
GsaI	CCCAGC	2 cut(s)	169, 312
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	5 cut(s)	164, 174, 206, 341, 373
HgaI	GACGC	1 cut(s)	537
HhaI	GCGC	2 cut(s)	604, 917
Hin1I	GRCGYC	1 cut(s)	529
Hin1II	CATG	3 cut(s)	49, 701, 853
Hin6I	GCGC	2 cut(s)	602, 915
HinP1I	GCGC	2 cut(s)	602, 915
HincII	GTYRAC	2 cut(s)	51, 592
HindII	GTYRAC	2 cut(s)	51, 592
HinfI	GANTC	6 cut(s)	92, 110, 139, 196, 329, 846
HpaI	GTTAAC	1 cut(s)	592
HphI	GGTGA	2 cut(s)	467, 568
Hpy166II	GTNNAC	2 cut(s)	51, 592
Hpy188I	TCNGA	8 cut(s)	88, 115, 201, 383, 448, 581, 862, 882
Hpy188III	TCNNGA	4 cut(s)	15, 497, 692, 850
Hpy8I	GTNNAC	2 cut(s)	51, 592
Hpy99I	CGWCG	4 cut(s)	268, 271, 274, 277
HpyAV	CCTTC	5 cut(s)	151, 472, 547, 576, 580
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	6 cut(s)	4, 509, 662, 758, 889, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 254, 347, 350
HpyF3I	CTNAG	7 cut(s)	87, 137, 237, 315, 516, 842, 861
HpySE526I	ACGT	1 cut(s)	679
Hsp92I	GRCGYC	1 cut(s)	529
Hsp92II	CATG	3 cut(s)	49, 701, 853
HspAI	GCGC	2 cut(s)	602, 915
KflI	GGGWCCC	1 cut(s)	653
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	1 cut(s)	743
LmnI	GCTCC	2 cut(s)	694, 883
Lsp1109I	GCAGC	4 cut(s)	241, 337, 621, 873
LweI	GCATC	2 cut(s)	780, 902
MaeI	CTAG	4 cut(s)	192, 537, 623, 737
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	3 cut(s)	37, 301, 482
MalI	GATC	1 cut(s)	745
MboI	GATC	1 cut(s)	743
MboII	GAAGA	7 cut(s)	75, 252, 270, 273, 414, 782, 847
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	184, 397, 671
MlyI	GAGTC	2 cut(s)	119, 148
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	2 cut(s)	441, 591
MspR9I	CCNGG	1 cut(s)	650
Mva1269I	GAATGC	2 cut(s)	464, 904
MvaI	CCWGG	1 cut(s)	650
MvnI	CGCG	1 cut(s)	917
MwoI	GCNNNNNNNGC	4 cut(s)	251, 254, 347, 350
NdeII	GATC	1 cut(s)	743
NlaIII	CATG	3 cut(s)	49, 701, 853
NlaIV	GGNNCC	2 cut(s)	654, 655
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	37
NotI	GCGGCCGC	1 cut(s)	339
NsbI	TGCGCA	1 cut(s)	603
NspI	RCATGY	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	849
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	3 cut(s)	269, 272, 281
PctI	GAATGC	2 cut(s)	464, 904
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	4 cut(s)	92, 196, 329, 846
PleI	GAGTC	2 cut(s)	118, 147
PpsI	GAGTC	2 cut(s)	118, 147
PpuMI	RGGWCCY	1 cut(s)	653
PscI	ACATGT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	648
PspFI	CCCAGC	2 cut(s)	165, 308
PspGI	CCWGG	1 cut(s)	648
PspN4I	GGNNCC	2 cut(s)	654, 655
PspPI	GGNCC	3 cut(s)	163, 173, 653
PspPPI	RGGWCCY	1 cut(s)	653
PspXI	VCTCGAGB	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	891
PstNI	CAGNNNCTG	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	126
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	441, 591
Sau3AI	GATC	1 cut(s)	743
Sau96I	GGNCC	3 cut(s)	163, 173, 653
SchI	GAGTC	2 cut(s)	119, 148
ScrFI	CCNGG	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	780, 902
SfcI	CTRYAG	1 cut(s)	887
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	653
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	536
Sse9I	AATT	3 cut(s)	184, 397, 671
SsiI	CCGC	8 cut(s)	147, 153, 161, 245, 248, 251, 338, 342
SspMI	CTAG	4 cut(s)	192, 537, 623, 737
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	648
StyI	CCWWGG	3 cut(s)	207, 402, 809
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	2 cut(s)	50, 120
TasI	AATT	3 cut(s)	184, 397, 671
TauI	GCSGC	6 cut(s)	164, 248, 251, 254, 341, 344
TfiI	GAWTC	4 cut(s)	92, 196, 329, 846
Tru1I	TTAA	2 cut(s)	441, 591
Tru9I	TTAA	2 cut(s)	441, 591
TscAI	CASTG	2 cut(s)	298, 436
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	4 cut(s)	254, 350, 609, 886
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	398, 410, 630, 783
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	298, 436
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	4 cut(s)	192, 537, 623, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.