Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28640 AT4G28640 AT4G28640 |
| fragaria_vesca | FvH4_2g20500 FvH4_2g20500 |
| malus_domestica | MD05G1188800.v1.1 MD10G1176400.v1.1 |
| prunus_persica | Prupe.8G215400_v2.0.a1 Prupe.8G215400_v2.0.a1 |
| pyrus_communis | pycom05g17340 pycom10g15230 |
| rosa_chinensis | RchiOBHm_Chr6g0286601 |
| rosa_laevigata | RLG00000012555 |
| rosa_multiflora | Rmu_sc0000560.1_g000004 |
| rosa_roxburghii | Rroxscaffold_7G00182150 |
| rosa_rugosa | Rorug06G0181400 Rorug06G0181500 |
| rosa_samantha | Rh6AG294300 Rh6BG297400 Rh6CG297800 Rh6DG289700 |
| rosa_wichuraiana | Rw6G025320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 283 |
| AccI | GTMKAC | 1 cut(s) | 426 |
| AciI | CCGC | 3 cut(s) | 117, 257, 263 |
| AcoI | YGGCCR | 1 cut(s) | 175 |
| AcsI | RAATTY | 2 cut(s) | 6, 453 |
| AfaI | GTAC | 2 cut(s) | 435, 475 |
| AgsI | TTSAA | 4 cut(s) | 98, 404, 451, 470 |
| AluBI | AGCT | 5 cut(s) | 94, 358, 369, 421, 464 |
| AluI | AGCT | 5 cut(s) | 94, 358, 369, 421, 464 |
| Alw26I | GTCTC | 2 cut(s) | 120, 306 |
| AoxI | GGCC | 1 cut(s) | 175 |
| ApeKI | GCWGC | 1 cut(s) | 280 |
| ApoI | RAATTY | 2 cut(s) | 6, 453 |
| BalI | TGGCCA | 1 cut(s) | 177 |
| BanII | GRGCYC | 1 cut(s) | 254 |
| BbsI | GAAGAC | 1 cut(s) | 239 |
| BbvI | GCAGC | 1 cut(s) | 267 |
| BccI | CCATC | 1 cut(s) | 128 |
| BceAI | ACGGC | 1 cut(s) | 234 |
| BcoDI | GTCTC | 2 cut(s) | 120, 306 |
| BfuAI | ACCTGC | 1 cut(s) | 283 |
| BisI | GCNGC | 1 cut(s) | 281 |
| BlsI | GCNGC | 1 cut(s) | 282 |
| BmcAI | AGTACT | 1 cut(s) | 475 |
| BmsI | GCATC | 1 cut(s) | 250 |
| BpiI | GAAGAC | 1 cut(s) | 239 |
| BpuEI | CTTGAG | 1 cut(s) | 173 |
| BsaI | GGTCTC | 1 cut(s) | 120 |
| Bse1I | ACTGG | 2 cut(s) | 178, 491 |
| BseGI | GGATG | 4 cut(s) | 113, 120, 224, 265 |
| BseMII | CTCAG | 1 cut(s) | 497 |
| BseNI | ACTGG | 2 cut(s) | 178, 491 |
| BseXI | GCAGC | 1 cut(s) | 267 |
| BshFI | GGCC | 1 cut(s) | 177 |
| BsmAI | GTCTC | 2 cut(s) | 120, 306 |
| BsnI | GGCC | 1 cut(s) | 177 |
| Bso31I | GGTCTC | 1 cut(s) | 120 |
| Bsp1286I | GDGCHC | 1 cut(s) | 254 |
| Bsp1407I | TGTACA | 1 cut(s) | 433 |
| Bsp143I | GATC | 1 cut(s) | 184 |
| BspACI | CCGC | 3 cut(s) | 117, 257, 263 |
| BspANI | GGCC | 1 cut(s) | 177 |
| BspCNI | CTCAG | 1 cut(s) | 498 |
| BspHI | TCATGA | 1 cut(s) | 457 |
| BspMI | ACCTGC | 1 cut(s) | 283 |
| BspTNI | GGTCTC | 1 cut(s) | 120 |
| BsrGI | TGTACA | 1 cut(s) | 433 |
| BsrI | ACTGG | 2 cut(s) | 178, 491 |
| BssMI | GATC | 1 cut(s) | 184 |
| Bst4CI | ACNGT | 1 cut(s) | 515 |
| Bst6I | CTCTTC | 3 cut(s) | 53, 74, 399 |
| BstAUI | TGTACA | 1 cut(s) | 433 |
| BstDEI | CTNAG | 1 cut(s) | 506 |
| BstF5I | GGATG | 4 cut(s) | 113, 120, 224, 265 |
| BstKTI | GATC | 1 cut(s) | 187 |
| BstMAI | GTCTC | 2 cut(s) | 120, 306 |
| BstMBI | GATC | 1 cut(s) | 184 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 289 |
| BstV1I | GCAGC | 1 cut(s) | 267 |
| BstV2I | GAAGAC | 1 cut(s) | 239 |
| BsuRI | GGCC | 1 cut(s) | 177 |
| BtsCI | GGATG | 4 cut(s) | 113, 120, 224, 265 |
| BtsIMutI | CAGTG | 1 cut(s) | 498 |
| BveI | ACCTGC | 1 cut(s) | 283 |
| CciI | TCATGA | 1 cut(s) | 457 |
| Csp6I | GTAC | 2 cut(s) | 434, 474 |
| CviAII | CATG | 1 cut(s) | 458 |
| CviQI | GTAC | 2 cut(s) | 434, 474 |
| DdeI | CTNAG | 1 cut(s) | 506 |
| DpnI | GATC | 1 cut(s) | 186 |
| DpnII | GATC | 1 cut(s) | 184 |
| DraI | TTTAAA | 1 cut(s) | 330 |
| EaeI | YGGCCR | 1 cut(s) | 175 |
| Eam1104I | CTCTTC | 3 cut(s) | 53, 74, 399 |
| EarI | CTCTTC | 3 cut(s) | 53, 74, 399 |
| EciI | GGCGGA | 1 cut(s) | 106 |
| Eco24I | GRGCYC | 1 cut(s) | 254 |
| Eco31I | GGTCTC | 1 cut(s) | 120 |
| EcoT38I | GRGCYC | 1 cut(s) | 254 |
| FaeI | CATG | 1 cut(s) | 461 |
| FaiI | YATR | 2 cut(s) | 413, 459 |
| FatI | CATG | 1 cut(s) | 457 |
| FblI | GTMKAC | 1 cut(s) | 426 |
| Fnu4HI | GCNGC | 1 cut(s) | 281 |
| FokI | GGATG | 4 cut(s) | 100, 107, 211, 272 |
| FriOI | GRGCYC | 1 cut(s) | 254 |
| Fsp4HI | GCNGC | 1 cut(s) | 281 |
| GluI | GCNGC | 1 cut(s) | 281 |
| HaeIII | GGCC | 1 cut(s) | 177 |
| Hin1II | CATG | 1 cut(s) | 461 |
| HindIII | AAGCTT | 4 cut(s) | 92, 356, 419, 462 |
| HinfI | GANTC | 3 cut(s) | 19, 198, 346 |
| Hpy166II | GTNNAC | 2 cut(s) | 364, 427 |
| Hpy188I | TCNGA | 3 cut(s) | 125, 184, 507 |
| Hpy188III | TCNNGA | 2 cut(s) | 137, 458 |
| Hpy8I | GTNNAC | 2 cut(s) | 364, 427 |
| Hpy99I | CGWCG | 1 cut(s) | 220 |
| HpyAV | CCTTC | 4 cut(s) | 68, 74, 153, 160 |
| HpyCH4III | ACNGT | 1 cut(s) | 515 |
| HpyCH4V | TGCA | 3 cut(s) | 269, 323, 445 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 289 |
| HpyF3I | CTNAG | 1 cut(s) | 506 |
| Hsp92II | CATG | 1 cut(s) | 461 |
| Kzo9I | GATC | 1 cut(s) | 184 |
| LmnI | GCTCC | 2 cut(s) | 85, 304 |
| LpnPI | CCDG | 9 cut(s) | 93, 150, 159, 177, 196, 267, 278, 286, 504 |
| Lsp1109I | GCAGC | 1 cut(s) | 267 |
| LweI | GCATC | 1 cut(s) | 250 |
| MalI | GATC | 1 cut(s) | 186 |
| MboI | GATC | 1 cut(s) | 184 |
| MboII | GAAGA | 5 cut(s) | 32, 40, 61, 244, 416 |
| MhlI | GDGCHC | 1 cut(s) | 254 |
| MlsI | TGGCCA | 1 cut(s) | 177 |
| MluCI | AATT | 5 cut(s) | 6, 98, 324, 437, 453 |
| MluNI | TGGCCA | 1 cut(s) | 177 |
| MnlI | CCTC | 6 cut(s) | 54, 157, 238, 282, 400, 501 |
| Mox20I | TGGCCA | 1 cut(s) | 177 |
| MscI | TGGCCA | 1 cut(s) | 177 |
| MseI | TTAA | 2 cut(s) | 329, 371 |
| Msp20I | TGGCCA | 1 cut(s) | 177 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 289 |
| NdeII | GATC | 1 cut(s) | 184 |
| NlaIII | CATG | 1 cut(s) | 461 |
| PagI | TCATGA | 1 cut(s) | 457 |
| PfeI | GAWTC | 3 cut(s) | 19, 198, 346 |
| PkrI | GCNGC | 1 cut(s) | 282 |
| RsaI | GTAC | 2 cut(s) | 435, 475 |
| RsaNI | GTAC | 2 cut(s) | 434, 474 |
| SaqAI | TTAA | 2 cut(s) | 329, 371 |
| SatI | GCNGC | 1 cut(s) | 281 |
| Sau3AI | GATC | 1 cut(s) | 184 |
| ScaI | AGTACT | 1 cut(s) | 475 |
| SduI | GDGCHC | 1 cut(s) | 254 |
| SfaNI | GCATC | 1 cut(s) | 250 |
| SmlI | CTYRAG | 1 cut(s) | 188 |
| SmoI | CTYRAG | 1 cut(s) | 188 |
| Sse9I | AATT | 5 cut(s) | 6, 98, 324, 437, 453 |
| SsiI | CCGC | 3 cut(s) | 117, 257, 263 |
| TaaI | ACNGT | 1 cut(s) | 515 |
| TaqI | TCGA | 2 cut(s) | 196, 230 |
| TasI | AATT | 5 cut(s) | 6, 98, 324, 437, 453 |
| TatI | WGTACW | 2 cut(s) | 433, 473 |
| TfiI | GAWTC | 3 cut(s) | 19, 198, 346 |
| Tru1I | TTAA | 2 cut(s) | 329, 371 |
| Tru9I | TTAA | 2 cut(s) | 329, 371 |
| TscAI | CASTG | 1 cut(s) | 498 |
| TseI | GCWGC | 1 cut(s) | 280 |
| TspDTI | ATGAA | 7 cut(s) | 17, 61, 213, 368, 446, 474, 501 |
| TspGWI | ACGGA | 1 cut(s) | 143 |
| TspRI | CASTG | 1 cut(s) | 498 |
| XapI | RAATTY | 2 cut(s) | 6, 453 |
| XmiI | GTMKAC | 1 cut(s) | 426 |
| ZrmI | AGTACT | 1 cut(s) | 475 |