Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009009

Physical Location & Seq

Genomic Coordinates Reverse (-)

48796590 .. 48798087

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG289700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCAGGGTTTTTCTGGAGGTTTAGGAACTGGGTCTGTGACTAACATGTCGACCGTGTCCAAAGATGAGAACTTTGCTATGTCTTCTGAGGATTCTTGTAGCCCAGATGAGTCTGACCTCGAGCTCTGTCTTGGGCTGAGTCTCGGCGGTGGCGGGAAGGCCGCCCAGCAAGGCCCAGTTGGGAATTATGCTAGGATTCTGACGGCCAAGGATTTCCGTTATGTGGGTTCTAACTCTAAGTCGTCGGCGGCCGCTGCTTCTTCTTCGTCGTCGTCTTCTTCGTTGAGCAGTGCTAATGTTACGGCTGGGACTAAGAGGAGTGCTGATTCTGTGGCGGCGGCTAATGGTGCCAATCAGGTTGTGGGATGGCCTCCTATCAGAGCTTATAGAATGAATTCCTTGGTTCATCAAGCAAAATCTTCAGCCACTGAAGTATTTAACTCGGAGAAAGGTGAATGCCAGATTACTTCAGGGAAGGGTAACATTGGTGGTCAAGAAAACAATGCAAATGCTAAGGAGGGAGGACGCCTCACTAGCTCCCTGTTTGTGAAGGTGAATATGGATGGAAGTGCAATCGGAAGGAAGGTTAACCTAACTGCGCATAGCAGCTATGAAGCCCTAGCACAAACTTTGGAGGATATGTTCCAGGGACCCTCTGCAAATGCGAAATTGATACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

226

Amino Acids

23.11

Weight (kDa)

7.69

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	40 - 220	1.9e-29	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28640 AT4G28640 AT4G28640
fragaria_vesca	FvH4_2g20500 FvH4_2g20500
malus_domestica	MD05G1188800.v1.1 MD10G1176400.v1.1
prunus_persica	Prupe.8G215400_v2.0.a1 Prupe.8G215400_v2.0.a1
pyrus_communis	pycom05g17340 pycom10g15230
rosa_chinensis	RchiOBHm_Chr6g0286601
rosa_laevigata	RLG00000012555
rosa_multiflora	Rmu_sc0000560.1_g000004
rosa_roxburghii	Rroxscaffold_7G00182150
rosa_rugosa	Rorug06G0181400 Rorug06G0181500
rosa_samantha	Rh6AG294300 Rh6BG297400 Rh6CG297800 Rh6DG289700
rosa_wichuraiana	Rw6G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
Acc16I	TGCGCA	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	7 cut(s)	147, 153, 162, 248, 252, 335, 338
AcoI	YGGCCR	2 cut(s)	204, 249
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	3 cut(s)	405, 450, 453
AcyI	GRCGYC	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	645
AloI	GAACNNNNNNTCC	2 cut(s)	626, 658
AluBI	AGCT	4 cut(s)	124, 383, 537, 609
AluI	AGCT	4 cut(s)	124, 383, 537, 609
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	146
AlwNI	CAGNNNCTG	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	5 cut(s)	159, 172, 204, 249, 368
ApeKI	GCWGC	2 cut(s)	254, 606
ApoI	RAATTY	1 cut(s)	394
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	2 cut(s)	173, 650
AsuHPI	GGTGA	2 cut(s)	464, 565
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	2 cut(s)	75, 267
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	241, 618
BccI	CCATC	2 cut(s)	360, 557
BceAI	ACGGC	2 cut(s)	219, 318
BciT130I	CCWGG	1 cut(s)	647
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	3 cut(s)	192, 534, 620
BisI	GCNGC	7 cut(s)	162, 249, 252, 255, 336, 339, 607
BlsI	GCNGC	7 cut(s)	163, 250, 253, 256, 337, 340, 608
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	173, 650
BmiI	GGNNCC	3 cut(s)	349, 651, 652
BmrFI	CCNGG	1 cut(s)	647
BmrI	ACTGGG	2 cut(s)	39, 170
BmuI	ACTGGG	2 cut(s)	39, 170
BpiI	GAAGAC	2 cut(s)	75, 267
BplI	GAGNNNNNCTC	2 cut(s)	513, 545
BpmI	CTGGAG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	207, 399, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	34, 176
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	3 cut(s)	207, 399, 646
BseGI	GGATG	2 cut(s)	371, 568
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	78, 128
BseNI	ACTGG	2 cut(s)	34, 176
BseRI	GAGGAG	1 cut(s)	331
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	241, 618
BseYI	CCCAGC	2 cut(s)	165, 305
Bsh1285I	CGRYCG	2 cut(s)	54, 252
BshFI	GGCC	5 cut(s)	161, 174, 206, 251, 370
BshNI	GGYRCC	1 cut(s)	347
BsiEI	CGRYCG	2 cut(s)	54, 252
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	322, 663
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	322, 663
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	5 cut(s)	161, 174, 206, 251, 370
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	126
BspACI	CCGC	7 cut(s)	147, 153, 162, 248, 252, 335, 338
BspANI	GGCC	5 cut(s)	161, 174, 206, 251, 370
BspCNI	CTCAG	2 cut(s)	79, 129
BspLI	GGNNCC	3 cut(s)	349, 651, 652
BspT107I	GGYRCC	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	34, 176
BssECI	CCNNGG	3 cut(s)	207, 399, 646
BssNI	GRCGYC	1 cut(s)	526
BssT1I	CCWWGG	2 cut(s)	207, 399
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	526
BstDEI	CTNAG	5 cut(s)	87, 137, 237, 312, 513
BstF5I	GGATG	2 cut(s)	371, 568
BstHHI	GCGC	1 cut(s)	601
BstMAI	GTCTC	1 cut(s)	146
BstMCI	CGRYCG	2 cut(s)	54, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 347, 534
BstNI	CCWGG	1 cut(s)	647
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	241, 618
BstV2I	GAAGAC	2 cut(s)	75, 267
BstZI	CGGCCG	1 cut(s)	249
BsuRI	GGCC	5 cut(s)	161, 174, 206, 251, 370
BtsCI	GGATG	2 cut(s)	371, 568
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	295, 426
CaiI	CAGNNNCTG	1 cut(s)	428
CciNI	GCGGCCGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	2 cut(s)	173, 650
CseI	GACGC	1 cut(s)	534
CviAII	CATG	1 cut(s)	46
DdeI	CTNAG	5 cut(s)	87, 137, 237, 312, 513
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	2 cut(s)	204, 249
EagI	CGGCCG	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	124
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	207, 399
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	650
Eco52I	CGGCCG	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	3 cut(s)	405, 450, 453
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	645
EcoT14I	CCWWGG	2 cut(s)	207, 399
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	207, 399
FaeI	CATG	1 cut(s)	49
FaiI	YATR	9 cut(s)	47, 80, 189, 222, 387, 560, 603, 612, 641
FaqI	GGGAC	2 cut(s)	322, 663
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	7 cut(s)	162, 249, 252, 255, 336, 339, 607
FokI	GGATG	2 cut(s)	378, 575
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	7 cut(s)	162, 249, 252, 255, 336, 339, 607
FspBI	CTAG	3 cut(s)	192, 534, 620
FspI	TGCGCA	1 cut(s)	600
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	7 cut(s)	162, 249, 252, 255, 336, 339, 607
GsaI	CCCAGC	2 cut(s)	169, 309
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	5 cut(s)	161, 174, 206, 251, 370
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HincII	GTYRAC	2 cut(s)	51, 589
HindII	GTYRAC	2 cut(s)	51, 589
HinfI	GANTC	5 cut(s)	92, 110, 139, 196, 326
HpaI	GTTAAC	1 cut(s)	589
HphI	GGTGA	2 cut(s)	464, 565
Hpy166II	GTNNAC	2 cut(s)	51, 589
Hpy188I	TCNGA	6 cut(s)	88, 115, 201, 380, 445, 578
Hpy188III	TCNNGA	2 cut(s)	15, 494
Hpy8I	GTNNAC	2 cut(s)	51, 589
Hpy99I	CGWCG	3 cut(s)	247, 271, 274
HpyAV	CCTTC	5 cut(s)	151, 469, 544, 573, 577
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	4 cut(s)	4, 506, 572, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 347, 534
HpyF3I	CTNAG	5 cut(s)	87, 137, 237, 312, 513
HpySE526I	ACGT	1 cut(s)	676
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	599
KflI	GGGWCCC	1 cut(s)	650
KspAI	GTTAAC	1 cut(s)	589
LmnI	GCTCC	1 cut(s)	542
Lsp1109I	GCAGC	2 cut(s)	241, 618
MaeI	CTAG	3 cut(s)	192, 534, 620
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	3 cut(s)	37, 298, 479
MboII	GAAGA	6 cut(s)	75, 252, 255, 267, 270, 411
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	184, 394, 668
MlyI	GAGTC	2 cut(s)	119, 148
MroXI	GAANNNNTTC	1 cut(s)	394
MseI	TTAA	2 cut(s)	438, 588
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	3 cut(s)	254, 347, 534
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	3 cut(s)	349, 651, 652
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	37
NotI	GCGGCCGC	1 cut(s)	249
NsbI	TGCGCA	1 cut(s)	600
NspI	RCATGY	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	92, 196, 326
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	7 cut(s)	163, 250, 253, 256, 337, 340, 608
PleI	GAGTC	2 cut(s)	118, 147
PpsI	GAGTC	2 cut(s)	118, 147
PpuMI	RGGWCCY	1 cut(s)	650
PscI	ACATGT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	645
PspFI	CCCAGC	2 cut(s)	165, 305
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	3 cut(s)	349, 651, 652
PspPI	GGNCC	2 cut(s)	173, 650
PspPPI	RGGWCCY	1 cut(s)	650
PspXI	VCTCGAGB	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	126
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	438, 588
SatI	GCNGC	7 cut(s)	162, 249, 252, 255, 336, 339, 607
Sau96I	GGNCC	2 cut(s)	173, 650
SchI	GAGTC	2 cut(s)	119, 148
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	184, 394, 668
SsiI	CCGC	7 cut(s)	147, 153, 162, 248, 252, 335, 338
SspMI	CTAG	3 cut(s)	192, 534, 620
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	645
StyI	CCWWGG	2 cut(s)	207, 399
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	2 cut(s)	50, 120
TasI	AATT	3 cut(s)	184, 394, 668
TauI	GCSGC	5 cut(s)	164, 251, 254, 338, 341
TfiI	GAWTC	3 cut(s)	92, 196, 326
Tru1I	TTAA	2 cut(s)	438, 588
Tru9I	TTAA	2 cut(s)	438, 588
TscAI	CASTG	2 cut(s)	295, 433
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	254, 606
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	395, 407, 627
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	295, 433
Tth111I	GACNNNGTC	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XhoI	CTCGAG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	3 cut(s)	192, 534, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.