Prupe.8G266100_v2.0.a1

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
22267137 .. 22269341
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G266100.1

Sequence Viewer

Length: 1923 bp
ATGGCTAATGCATTCTTCCCCTTCACACCGTTTGATTTTGGAGTCCTAGGTGGTTTGACTCCTCAGCTTGAAGATTATGAGAAAGATCAGGAAGTGGCCTTCAAAGTGAAACCAGGGCATTTGTTTGCCATAGAAGAATTGGGGTTGGGAGAGATGGATAGTTCTCTTTCTTCTGAACATGGTTTCTATCAAGAAGACAGTAAGGCCAAGAAAGGAGGACTATCCCATTTCTCCAAAGATCCCGAGCCAACTTATTCACTTTCGGATAATTTCAACTTTGATATCGTTTCTTCTGAACATGGTTTCCAGCAATCTAACAAGTCCGAGAAAGGACTAGCTCATTTGTCCAAAGATCAAGACCACCACCATTACCAACAACACCCCCATTACCAGCAGCAACAACCCAAGTCAAATTATTCAATTTTGGATAATTTCAACTTTGATTCTGCCTTCCCACCAGCACACCCAATCCAGGATGGCACTCACCAGTTTACATACAACCAAATCGGAGGCTCAGACATTGCAGAAACCAACAAACACTTGCCCCATCAATCTTCCTTAGCAGTTTTGGAGCTCCTTAACAGCTATGGGAGCGCGTTCAAGAACTTGAGGGGAGAAAGAACAAGCAGCAACACAGGAAATGAAGCTGAAGCCTCCTCCTATGTGGGACAGCAAAAATTGTCAACCGAAGAGATCATGAGGGTTGCTGGAGCAAGGTATGTGCAATTCTCTAATCAGGGGTATGGTGACTTTTACCCTCTGCACCCTTTTGGCTACGCTCTTTCGGGTCTGTCCGAAGAAGAAACAAAGGATGCGGAACTTGCTCACATACTTTTAGCTGCAGCAGAGAAGGTAGGCTACCAACAATTTGAACGCGCAAACAGACTGCTTCTTCGTTGTGAATGGATTGCATCCTTCAAAGGCAACCCTGTTCAGAGGGTCGTTTTCTACTTTGCTGAGGCACTTCGGGAGAGGATCGAAAGAGAAACAGGAAGCATCCCATCTAAGGCAAAAGAAATGTCTATATCTGGTCATGGACTGAGCACAAACCCCACATACATTGCATGCCACCAAGAAGTCCCTTTCCATTCAGTAATGCAGTTCACTGGGATCCAAGCCATAATCGAAAGTGTTTCCTTGGAGAGTAAGGTTCATTTGATCGATCTCGAGATCAGGAGTGGAGTGCAATGGACAGGGCTGATGGAATCACTTGCAGAACGAGAGGAATGTCCAGTTGAGCTTCTCACAATAACTGCTGTGGGAGTAGCAGGCAAGCAGAAGATAGAGGAGACAGGAAAGAGGCTAACAAGCGTTGCCGAGTCCCTGAACATACCCTTTCAGTTTAAGGCAGTGATTATTTCAGCCATGGAAGATATCAAAGACCAACTGTTTGATGTTGAAGATGATGAAGCCGTGGCTGTATACGCACCGTTAATACTGAGGACAATGATTTCAAGGCCTAGTTGCTTGGAAAATTTGATGAGGGTGATGAGAAATCTCACCCCTTGTATAATGGTGGTGATTGAAGTGGAAGTTAACCACAACTCACCGTCATTTGTGAACCGCTTCATCGATGCGCTGTTTTATTACAGTGCGTTTTTCGACTGCCTTGAGACTTGCATGAAACAGGAGGAGTATAGAGTGCTGACGGAAGACTTGTTCCGGGAGGGCATCCGAAACATTGTAGCGGCAGAGGGGAGTGAAAGGGTTGCTCGAAGTGTGAAAATGGATGTGTGGAGAGCCTTCTTTGCAAGGTTCAGAATGGTGGAAATGAACTTTAGTAATGCATCTTTGTATCAAGCTAGTTTACTGGCTAAAAGGTTTGGTTGTCCTTCTTGCACACTTGATAGGAATGGCAAATGTCTCACTGTCGGGTGGAAGGGAACCCCAATTCATTCCGTTTCAGCTTGGAAGTTCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

641

Amino Acids

72.1

Weight (kDa)

5.5

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1422
AccII CGCG 2 cut(s) 596, 876
AciI CCGC 3 cut(s) 815, 1564, 1688
AclWI GGATC 4 cut(s) 233, 983, 1105, 1118
AcsI RAATTY 1 cut(s) 1474
AcuI CTGAAG 1 cut(s) 669
AfiI CCNNNNNNNGG 2 cut(s) 472, 1006
AjnI CCWGG 2 cut(s) 112, 471
AloI GAACNNNNNNTCC 4 cut(s) 288, 320, 1643, 1675
AluBI AGCT 9 cut(s) 67, 338, 574, 585, 647, 839, 1240, 1802, 1907
AluI AGCT 9 cut(s) 67, 338, 574, 585, 647, 839, 1240, 1802, 1907
Alw21I GWGCWC 2 cut(s) 576, 1046
Alw26I GTCTC 3 cut(s) 1283, 1607, 1868
AlwI GGATC 4 cut(s) 233, 983, 1105, 1118
Ama87I CYCGRG 2 cut(s) 242, 1166
AoxI GGCC 3 cut(s) 96, 204, 1457
ApeKI GCWGC 4 cut(s) 394, 627, 839, 842
ApoI RAATTY 1 cut(s) 1474
ArsI GACNNNNNNTTYG 6 cut(s) 876, 908, 1004, 1036, 1373, 1405
Asp700I GAANNNNTTC 1 cut(s) 1565
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 3 cut(s) 596, 878, 1579
AsuC2I CCSGG 1 cut(s) 1664
AsuHPI GGTGA 6 cut(s) 476, 758, 1492, 1498, 1531, 1539
AvaI CYCGRG 2 cut(s) 242, 1166
AvrII CCTAGG 1 cut(s) 46
BamHI GGATCC 1 cut(s) 1110
BanII GRGCYC 1 cut(s) 576
BarI GAAGNNNNNNTAC 2 cut(s) 842, 874
BbsI GAAGAC 2 cut(s) 201, 1659
Bbv12I GWGCWC 2 cut(s) 576, 1046
BbvCI CCTCAGC 2 cut(s) 63, 957
BbvI GCAGC 4 cut(s) 406, 639, 826, 854
BccI CCATC 5 cut(s) 148, 470, 555, 1009, 1195
BceAI ACGGC 1 cut(s) 1397
BciT130I CCWGG 2 cut(s) 114, 473
BcnI CCSGG 1 cut(s) 1664
BcoDI GTCTC 3 cut(s) 1283, 1607, 1868
BfaI CTAG 4 cut(s) 47, 335, 1461, 1803
BfmI CTRYAG 1 cut(s) 840
BisI GCNGC 5 cut(s) 395, 628, 840, 843, 1689
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 5 cut(s) 396, 629, 841, 844, 1690
Bme1390I CCNGG 3 cut(s) 114, 473, 1664
BmeT110I CYCGRG 2 cut(s) 242, 1166
BmiI GGNNCC 2 cut(s) 1112, 1885
BmrFI CCNGG 3 cut(s) 114, 473, 1664
BmrI ACTGGG 1 cut(s) 1116
BmsI GCATC 6 cut(s) 802, 920, 1005, 1564, 1680, 1796
BmuI ACTGGG 1 cut(s) 1116
BpiI GAAGAC 2 cut(s) 201, 1659
BpmI CTGGAG 1 cut(s) 729
Bpu10I CCTNAGC 3 cut(s) 63, 559, 957
BpuEI CTTGAG 2 cut(s) 628, 1631
BpuMI CCSGG 1 cut(s) 1664
Bsa29I ATCGAT 2 cut(s) 1161, 1572
BsaJI CCNNGG 5 cut(s) 46, 113, 1137, 1365, 1413
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 1006
Bse1I ACTGG 4 cut(s) 487, 1111, 1232, 1815
Bse3DI GCAATG 3 cut(s) 519, 1059, 1193
BseBI CCWGG 2 cut(s) 114, 473
BseCI ATCGAT 2 cut(s) 1161, 1572
BseDI CCNNGG 5 cut(s) 46, 113, 1137, 1365, 1413
BseGI GGATG 6 cut(s) 481, 817, 911, 996, 1671, 1735
BseLI CCNNNNNNNGG 2 cut(s) 472, 1006
BseMI GCAATG 3 cut(s) 519, 1059, 1193
BseMII CTCAG 5 cut(s) 77, 528, 948, 1031, 1430
BseNI ACTGG 4 cut(s) 487, 1111, 1232, 1815
BseRI GAGGAG 4 cut(s) 51, 646, 1301, 1646
BseXI GCAGC 4 cut(s) 406, 639, 826, 854
BsgI GTGCAG 1 cut(s) 746
Bsh1236I CGCG 2 cut(s) 596, 876
BshFI GGCC 3 cut(s) 98, 206, 1459
BshVI ATCGAT 2 cut(s) 1161, 1572
BsiHKAI GWGCWC 2 cut(s) 576, 1046
BsiHKCI CYCGRG 2 cut(s) 242, 1166
BsiSI CCGG 1 cut(s) 1663
BslFI GGGAC 3 cut(s) 681, 1064, 1306
BslI CCNNNNNNNGG 2 cut(s) 472, 1006
BsmAI GTCTC 3 cut(s) 1283, 1607, 1868
BsmFI GGGAC 3 cut(s) 681, 1064, 1306
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 3 cut(s) 98, 206, 1459
BsoBI CYCGRG 2 cut(s) 242, 1166
Bsp1286I GDGCHC 2 cut(s) 576, 1046
Bsp143I GATC 9 cut(s) 85, 238, 352, 693, 975, 1110, 1158, 1162, 1170
Bsp19I CCATGG 1 cut(s) 1365
BspACI CCGC 3 cut(s) 815, 1564, 1688
BspANI GGCC 3 cut(s) 98, 206, 1459
BspCNI CTCAG 5 cut(s) 76, 527, 949, 1032, 1431
BspDI ATCGAT 2 cut(s) 1161, 1572
BspFNI CGCG 2 cut(s) 596, 876
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 2 cut(s) 1112, 1885
BspMAI CTGCAG 1 cut(s) 844
BspPI GGATC 4 cut(s) 233, 983, 1105, 1118
BsrDI GCAATG 3 cut(s) 519, 1059, 1193
BsrI ACTGG 4 cut(s) 487, 1111, 1232, 1815
BssECI CCNNGG 5 cut(s) 46, 113, 1137, 1365, 1413
BssMI GATC 9 cut(s) 85, 238, 352, 693, 975, 1110, 1158, 1162, 1170
BssNAI GTATAC 1 cut(s) 1423
BssT1I CCWWGG 3 cut(s) 46, 1137, 1365
Bst1107I GTATAC 1 cut(s) 1423
Bst2UI CCWGG 2 cut(s) 114, 473
Bst4CI ACNGT 7 cut(s) 30, 200, 1389, 1431, 1551, 1592, 1870
Bst6I CTCTTC 1 cut(s) 684
BstC8I GCNNGC 3 cut(s) 1066, 1270, 1274
BstDEI CTNAG 7 cut(s) 63, 514, 559, 957, 1005, 1040, 1439
BstDSI CCRYGG 2 cut(s) 1365, 1413
BstF5I GGATG 6 cut(s) 481, 817, 911, 996, 1671, 1735
BstFNI CGCG 2 cut(s) 596, 876
BstHHI GCGC 3 cut(s) 596, 878, 1579
BstKTI GATC 9 cut(s) 88, 241, 355, 696, 978, 1113, 1161, 1165, 1173
BstMAI GTCTC 3 cut(s) 1283, 1607, 1868
BstMBI GATC 9 cut(s) 85, 238, 352, 693, 975, 1110, 1158, 1162, 1170
BstMWI GCNNNNNNNGC 4 cut(s) 591, 821, 1424, 1748
BstNI CCWGG 2 cut(s) 114, 473
BstNSI RCATGY 1 cut(s) 1068
BstSCI CCNGG 3 cut(s) 112, 471, 1662
BstSFI CTRYAG 1 cut(s) 840
BstUI CGCG 2 cut(s) 596, 876
BstV1I GCAGC 4 cut(s) 406, 639, 826, 854
BstV2I GAAGAC 2 cut(s) 201, 1659
BstX2I RGATCY 2 cut(s) 238, 1110
BstYI RGATCY 2 cut(s) 238, 1110
BstZ17I GTATAC 1 cut(s) 1423
Bsu15I ATCGAT 2 cut(s) 1161, 1572
BsuRI GGCC 3 cut(s) 98, 206, 1459
BsuTUI ATCGAT 2 cut(s) 1161, 1572
BtgI CCRYGG 2 cut(s) 1365, 1413
BtsCI GGATG 6 cut(s) 481, 817, 911, 996, 1671, 1735
BtsI GCAGTG 1 cut(s) 1356
BtsIMutI CAGTG 4 cut(s) 1104, 1356, 1597, 1866
Cac8I GCNNGC 3 cut(s) 1066, 1270, 1274
CciI TCATGA 1 cut(s) 696
CfoI GCGC 3 cut(s) 596, 878, 1579
ClaI ATCGAT 2 cut(s) 1161, 1572
CspCI CAANNNNNGTGG 2 cut(s) 1042, 1077
CviAII CATG 7 cut(s) 179, 299, 697, 1034, 1065, 1366, 1621
DdeI CTNAG 7 cut(s) 63, 514, 559, 957, 1005, 1040, 1439
DpnI GATC 9 cut(s) 87, 240, 354, 695, 977, 1112, 1160, 1164, 1172
DpnII GATC 9 cut(s) 85, 238, 352, 693, 975, 1110, 1158, 1162, 1170
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Ecl136II GAGCTC 1 cut(s) 574
Eco130I CCWWGG 3 cut(s) 46, 1137, 1365
Eco147I AGGCCT 1 cut(s) 1459
Eco24I GRGCYC 1 cut(s) 576
Eco32I GATATC 2 cut(s) 283, 1375
Eco53kI GAGCTC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 669
Eco88I CYCGRG 2 cut(s) 242, 1166
EcoICRI GAGCTC 1 cut(s) 574
EcoRII CCWGG 2 cut(s) 112, 471
EcoRV GATATC 2 cut(s) 283, 1375
EcoT14I CCWWGG 3 cut(s) 46, 1137, 1365
EcoT22I ATGCAT 2 cut(s) 13, 1789
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 3 cut(s) 46, 1137, 1365
FaeI CATG 7 cut(s) 182, 302, 700, 1037, 1068, 1369, 1624
FaqI GGGAC 3 cut(s) 681, 1064, 1306
FatI CATG 7 cut(s) 178, 298, 696, 1033, 1064, 1365, 1620
FblI GTMKAC 1 cut(s) 1422
Fnu4HI GCNGC 5 cut(s) 395, 628, 840, 843, 1689
FokI GGATG 6 cut(s) 488, 824, 898, 983, 1658, 1742
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 5 cut(s) 395, 628, 840, 843, 1689
FspBI CTAG 4 cut(s) 47, 335, 1461, 1803
GlaI GCGC 3 cut(s) 595, 877, 1578
GluI GCNGC 5 cut(s) 395, 628, 840, 843, 1689
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 3 cut(s) 98, 206, 1459
HapII CCGG 1 cut(s) 1663
HhaI GCGC 3 cut(s) 596, 878, 1579
Hin1II CATG 7 cut(s) 182, 302, 700, 1037, 1068, 1369, 1624
Hin6I GCGC 3 cut(s) 594, 876, 1577
HinP1I GCGC 3 cut(s) 594, 876, 1577
HincII GTYRAC 2 cut(s) 684, 1537
HindII GTYRAC 2 cut(s) 684, 1537
HinfI GANTC 5 cut(s) 42, 58, 443, 1205, 1319
HpaI GTTAAC 1 cut(s) 1537
HpaII CCGG 1 cut(s) 1663
HphI GGTGA 6 cut(s) 476, 758, 1492, 1498, 1531, 1539
Hpy166II GTNNAC 7 cut(s) 492, 684, 1104, 1423, 1537, 1561, 1808
Hpy8I GTNNAC 7 cut(s) 492, 684, 1104, 1423, 1537, 1561, 1808
HpyAV CCTTC 8 cut(s) 31, 109, 460, 844, 925, 1753, 1842, 1873
HpyCH4III ACNGT 7 cut(s) 30, 200, 1389, 1431, 1551, 1592, 1870
HpyF10VI GCNNNNNNNGC 4 cut(s) 591, 821, 1424, 1748
HpyF3I CTNAG 7 cut(s) 63, 514, 559, 957, 1005, 1040, 1439
Hsp92II CATG 7 cut(s) 182, 302, 700, 1037, 1068, 1369, 1624
HspAI GCGC 3 cut(s) 594, 876, 1577
KspAI GTTAAC 1 cut(s) 1537
Kzo9I GATC 9 cut(s) 85, 238, 352, 693, 975, 1110, 1158, 1162, 1170
LmnI GCTCC 4 cut(s) 571, 579, 591, 710
Lsp1109I GCAGC 4 cut(s) 406, 639, 826, 854
LweI GCATC 6 cut(s) 802, 920, 1005, 1564, 1680, 1796
MaeI CTAG 4 cut(s) 47, 335, 1461, 1803
MaeIII GTNAC 1 cut(s) 746
MalI GATC 9 cut(s) 87, 240, 354, 695, 977, 1112, 1160, 1164, 1172
MboI GATC 9 cut(s) 85, 238, 352, 693, 975, 1110, 1158, 1162, 1170
MflI RGATCY 2 cut(s) 238, 1110
MhlI GDGCHC 2 cut(s) 576, 1046
MlyI GAGTC 3 cut(s) 51, 52, 1328
Mph1103I ATGCAT 2 cut(s) 13, 1789
MroXI GAANNNNTTC 1 cut(s) 1565
MseI TTAA 4 cut(s) 579, 1344, 1433, 1536
MspI CCGG 1 cut(s) 1663
MspR9I CCNGG 3 cut(s) 114, 473, 1664
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 2 cut(s) 114, 473
MvnI CGCG 2 cut(s) 596, 876
MwoI GCNNNNNNNGC 4 cut(s) 591, 821, 1424, 1748
NciI CCSGG 1 cut(s) 1664
NcoI CCATGG 1 cut(s) 1365
NdeII GATC 9 cut(s) 85, 238, 352, 693, 975, 1110, 1158, 1162, 1170
NlaIII CATG 7 cut(s) 182, 302, 700, 1037, 1068, 1369, 1624
NlaIV GGNNCC 2 cut(s) 1112, 1885
NmeAIII GCCGAG 1 cut(s) 1342
NmuCI GTSAC 1 cut(s) 746
NsiI ATGCAT 2 cut(s) 13, 1789
NspI RCATGY 1 cut(s) 1068
PaeI GCATGC 1 cut(s) 1068
PaeR7I CTCGAG 1 cut(s) 1166
PagI TCATGA 1 cut(s) 696
PceI AGGCCT 1 cut(s) 1459
PctI GAATGC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 1565
PfeI GAWTC 2 cut(s) 443, 1205
PfoI TCCNGGA 2 cut(s) 471, 1662
PkrI GCNGC 5 cut(s) 396, 629, 841, 844, 1690
PleI GAGTC 3 cut(s) 50, 52, 1327
PpsI GAGTC 3 cut(s) 50, 52, 1327
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 112, 471
PspGI CCWGG 2 cut(s) 112, 471
PspN4I GGNNCC 2 cut(s) 1112, 1885
PstI CTGCAG 1 cut(s) 844
PsuI RGATCY 2 cut(s) 238, 1110
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 4 cut(s) 579, 1344, 1433, 1536
SatI GCNGC 5 cut(s) 395, 628, 840, 843, 1689
Sau3AI GATC 9 cut(s) 85, 238, 352, 693, 975, 1110, 1158, 1162, 1170
SchI GAGTC 3 cut(s) 51, 52, 1328
ScrFI CCNGG 3 cut(s) 114, 473, 1664
SduI GDGCHC 2 cut(s) 576, 1046
SfaNI GCATC 6 cut(s) 802, 920, 1005, 1564, 1680, 1796
SfcI CTRYAG 1 cut(s) 840
Sfr274I CTCGAG 1 cut(s) 1166
SlaI CTCGAG 1 cut(s) 1166
SmlI CTYRAG 3 cut(s) 607, 1166, 1610
SmoI CTYRAG 3 cut(s) 607, 1166, 1610
SphI GCATGC 1 cut(s) 1068
SseBI AGGCCT 1 cut(s) 1459
SsiI CCGC 3 cut(s) 815, 1564, 1688
SspMI CTAG 4 cut(s) 47, 335, 1461, 1803
SstI GAGCTC 1 cut(s) 576
StuI AGGCCT 1 cut(s) 1459
StyD4I CCNGG 3 cut(s) 112, 471, 1662
StyI CCWWGG 3 cut(s) 46, 1137, 1365
TaaI ACNGT 7 cut(s) 30, 200, 1389, 1431, 1551, 1592, 1870
TaqI TCGA 7 cut(s) 978, 1125, 1161, 1167, 1572, 1602, 1714
TauI GCSGC 1 cut(s) 1691
TfiI GAWTC 2 cut(s) 443, 1205
Tru1I TTAA 4 cut(s) 579, 1344, 1433, 1536
Tru9I TTAA 4 cut(s) 579, 1344, 1433, 1536
TscAI CASTG 4 cut(s) 1111, 1356, 1597, 1873
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 4 cut(s) 394, 627, 839, 842
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 7 cut(s) 657, 1142, 1422, 1558, 1637, 1787, 1883
TspGWI ACGGA 3 cut(s) 1664, 1888, 1907
TspRI CASTG 4 cut(s) 1111, 1356, 1597, 1873
XapI RAATTY 1 cut(s) 1474
XceI RCATGY 1 cut(s) 1068
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 1166
XmaJI CCTAGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 1422
XmnI GAANNNNTTC 1 cut(s) 1565
XspI CTAG 4 cut(s) 47, 335, 1461, 1803
Zsp2I ATGCAT 2 cut(s) 13, 1789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.