Rh7DG481400

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005917
Physical Location & Seq
Forward (+)
68674795 .. 68676225
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG481400.1

Sequence Viewer

Length: 1431 bp
ATGAACACGCAATTGCCGCCTCCTCAATCTTCTCTAGGAACACTGGAGCTCCTAAACAGTTATGGAAGCGCGTTCAAGAAGTTGAAGGGAGAAAGACAAAGCAGTAGCAGGGCAGTTAAGGGTAATGAAATTGATCAAAACAGCAGGTACGTTGTTAATGGTAAACAGAAACTGTCCACCGAAGAGGTCATGAGGGTTGCTGGAGCAAGGTATGTGAAATTCTCTAGTCAGGGGTATGAAAATTTGTACATGTCTATGCACCCTTTTGGCTATGCGCTTTCAGGTCTCTGTGAAGAAGAAACGAAAGATGTAGAACTTGTTCACTTACTGTTAGCTGCAACAGAGAAAGTAGGGTACCAACAATTTGAAAGAGCAAGCAGATTGCTTCTGCAGTGTGAATGGATTCCATTCTTCAAAGGTACTCCTGTTCAGAAAGTTGTGTGCTACTTCGCAGAGGCACTCCGTGAGAGGATCGAAAAAGAAACAGGGCAGTATACATCTAAGGGAAATGAAGAATTGTCTCAATATGCACATGGTTTGGGGACAAACCTTGCATACATCGCATGCCACCAAGAAGTCCCTTTCCATCCCGTACTGCAGTTCGCGGCAATCCAAGCCATGATCGAAAATGTTGCAAATGAGAGTAGGATCCATTTGATTGATCTGGAAATCAGGAGTGGTGTGCAATGGACAGGGTGGATGGAAGCAATTGCAGAACGAGAGGAATGCCCGGTTGAGCTTCTTACTATTACTGCTGTGGGAGTTAGAGGCAAACAGAATATAAAGGAGACGGGGGAGAGGTTGGCAAGTGTGGCAAAGTCCTTGAACGTACCCTTTAAATTTAAGGAAGTTATTGTATCAGACATGCAAGACATTAATAACCAGTTATTCGAAGAAATTGAAGATGATGAAGCTGTGGTTGTGTACGCGCCATTAATACTGAGGACAATGATAGCAAGGCCCCGGTGCTTGGAGAACTTGATGAGGGTGATGAGAAATATCAACCCTTCTTTGATGGTGGTCATTGAAGTGGAAGCTAACCATAACTCCCCATCATTTGTGCACCGTTTCATTGATACTTTGTTTTTTTATAGTGCATTTTTCGACTGCCTTGAAACCTGTATGAAACAGGAGAAGTACAGGGTGATCATGGAAGGCTTGTTGCGTGAGGGAATCCGGAACATAGTGGCGGCGGAAGGGAGTGAAAGGGTTGCTCGAAGTGTGAAGATGGATGTGTGGAGGGCCTTCTTTGCAAGGTTTAGCATGGTGGAAATGAGCTTTAGTAACTCATCATTTTATCAAGCTAGTCTAGTGGCTAAAAAGTTCTGTTGCACGACACTAGATAGGAATGGAAAATGTCTCACTGTTGGGTGGAAGGGAACCCCAATTCATTCGCTTTCCGCTTGGAAGTTCCGTCTTGAAAAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

476

Amino Acids

54.2

Weight (kDa)

6.78

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 106 - 470 1.3e-75 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 494
AccII CGCG 3 cut(s) 71, 605, 929
AccIII TCCGGA 1 cut(s) 1176
AciI CCGC 5 cut(s) 17, 605, 1190, 1193, 1401
AclWI GGATC 3 cut(s) 479, 643, 656
AcsI RAATTY 3 cut(s) 218, 241, 839
AdeI CACNNNGTG 1 cut(s) 464
AfaI GTAC 8 cut(s) 149, 248, 356, 421, 594, 831, 926, 1139
AfiI CCNNNNNNNGG 1 cut(s) 970
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 9 cut(s) 76, 85, 368, 415, 826, 902, 1028, 1115, 1421
AluBI AGCT 7 cut(s) 49, 335, 739, 914, 1037, 1278, 1304
AluI AGCT 7 cut(s) 49, 335, 739, 914, 1037, 1278, 1304
Alw21I GWGCWC 2 cut(s) 51, 1065
Alw26I GTCTC 4 cut(s) 290, 525, 782, 1364
Alw44I GTGCAC 1 cut(s) 1061
AlwI GGATC 3 cut(s) 479, 643, 656
AlwNI CAGNNNCTG 1 cut(s) 172
Aor13HI TCCGGA 1 cut(s) 1176
AoxI GGCC 2 cut(s) 959, 1242
ApaLI GTGCAC 1 cut(s) 1061
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 3 cut(s) 218, 241, 839
AseI ATTAAT 2 cut(s) 876, 935
Asp700I GAANNNNTTC 2 cut(s) 318, 402
Asp718I GGTACC 1 cut(s) 354
AspLEI GCGC 3 cut(s) 71, 277, 931
AspS9I GGNCC 2 cut(s) 960, 1242
AsuC2I CCSGG 2 cut(s) 731, 964
AsuHPI GGTGA 2 cut(s) 1000, 1156
AsuII TTCGAA 1 cut(s) 891
BaeGI GKGCMC 1 cut(s) 1065
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BamHI GGATCC 1 cut(s) 648
BanI GGYRCC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 51, 1065
BbvI GCAGC 1 cut(s) 322
BccI CCATC 5 cut(s) 594, 694, 1009, 1060, 1222
BcgI CGANNNNNNTGC 4 cut(s) 614, 648, 708, 742
BclI TGATCA 2 cut(s) 133, 1146
BcnI CCSGG 2 cut(s) 731, 964
BcoDI GTCTC 4 cut(s) 290, 525, 782, 1364
BfaI CTAG 5 cut(s) 35, 225, 1305, 1310, 1340
BfmI CTRYAG 2 cut(s) 389, 596
BfuAI ACCTGC 1 cut(s) 135
BisI GCNGC 4 cut(s) 17, 336, 606, 1191
BlsI GCNGC 4 cut(s) 18, 337, 607, 1192
Bme1390I CCNGG 2 cut(s) 731, 964
BmgT120I GGNCC 2 cut(s) 960, 1242
BmiI GGNNCC 4 cut(s) 356, 650, 962, 1381
BmrFI CCNGG 2 cut(s) 731, 964
BpmI CTGGAG 2 cut(s) 65, 222
Bpu14I TTCGAA 1 cut(s) 891
BpuMI CCSGG 2 cut(s) 731, 964
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 962
BsaWI WCCGGW 1 cut(s) 1176
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 1031, 1061
Bsc4I CCNNNNNNNGG 1 cut(s) 970
Bse1I ACTGG 2 cut(s) 48, 883
Bse3DI GCAATG 1 cut(s) 692
BseAI TCCGGA 1 cut(s) 1176
BseDI CCNNGG 1 cut(s) 962
BseGI GGATG 3 cut(s) 586, 705, 1237
BseLI CCNNNNNNNGG 1 cut(s) 970
BseMI GCAATG 1 cut(s) 692
BseMII CTCAG 1 cut(s) 932
BseNI ACTGG 2 cut(s) 48, 883
BseRI GAGGAG 1 cut(s) 12
BseSI GKGCMC 1 cut(s) 1065
BseXI GCAGC 1 cut(s) 322
Bsh1236I CGCG 3 cut(s) 71, 605, 929
BshFI GGCC 2 cut(s) 961, 1244
BshNI GGYRCC 1 cut(s) 354
BsiHKAI GWGCWC 2 cut(s) 51, 1065
BsiSI CCGG 3 cut(s) 731, 964, 1177
BslFI GGGAC 2 cut(s) 556, 563
BslI CCNNNNNNNGG 1 cut(s) 970
BsmAI GTCTC 4 cut(s) 290, 525, 782, 1364
BsmBI CGTCTC 1 cut(s) 782
BsmFI GGGAC 2 cut(s) 556, 563
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 2 cut(s) 961, 1244
Bso31I GGTCTC 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 891
Bsp1286I GDGCHC 2 cut(s) 51, 1065
Bsp13I TCCGGA 1 cut(s) 1176
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 6 cut(s) 133, 471, 621, 648, 661, 1146
BspACI CCGC 5 cut(s) 17, 605, 1190, 1193, 1401
BspANI GGCC 2 cut(s) 961, 1244
BspCNI CTCAG 1 cut(s) 933
BspEI TCCGGA 1 cut(s) 1176
BspFNI CGCG 3 cut(s) 71, 605, 929
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 356, 650, 962, 1381
BspMAI CTGCAG 2 cut(s) 393, 600
BspMI ACCTGC 1 cut(s) 135
BspPI GGATC 3 cut(s) 479, 643, 656
BspT104I TTCGAA 1 cut(s) 891
BspT107I GGYRCC 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 692
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 2 cut(s) 48, 883
BssECI CCNNGG 1 cut(s) 962
BssMI GATC 6 cut(s) 133, 471, 621, 648, 661, 1146
BssNAI GTATAC 1 cut(s) 495
Bst1107I GTATAC 1 cut(s) 495
Bst4CI ACNGT 5 cut(s) 59, 174, 330, 1067, 1366
Bst6I CTCTTC 1 cut(s) 177
BstAUI TGTACA 1 cut(s) 246
BstBI TTCGAA 1 cut(s) 891
BstC8I GCNNGC 2 cut(s) 376, 565
BstDEI CTNAG 2 cut(s) 501, 941
BstF5I GGATG 3 cut(s) 586, 705, 1237
BstFNI CGCG 3 cut(s) 71, 605, 929
BstHHI GCGC 3 cut(s) 71, 277, 931
BstKTI GATC 6 cut(s) 136, 474, 624, 651, 664, 1149
BstMAI GTCTC 4 cut(s) 290, 525, 782, 1364
BstMBI GATC 6 cut(s) 133, 471, 621, 648, 661, 1146
BstMWI GCNNNNNNNGC 5 cut(s) 16, 560, 614, 812, 1250
BstNSI RCATGY 3 cut(s) 253, 567, 868
BstSCI CCNGG 2 cut(s) 729, 962
BstSFI CTRYAG 2 cut(s) 389, 596
BstSLI GKGCMC 1 cut(s) 1065
BstUI CGCG 3 cut(s) 71, 605, 929
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 648
BstYI RGATCY 1 cut(s) 648
BstZ17I GTATAC 1 cut(s) 495
BsuRI GGCC 2 cut(s) 961, 1244
BtgZI GCGATG 1 cut(s) 544
BtsCI GGATG 3 cut(s) 586, 705, 1237
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 3 cut(s) 41, 398, 1362
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 376, 565
CaiI CAGNNNCTG 1 cut(s) 172
CciI TCATGA 1 cut(s) 189
CfoI GCGC 3 cut(s) 71, 277, 931
Cfr13I GGNCC 2 cut(s) 960, 1242
Csp6I GTAC 8 cut(s) 148, 247, 355, 420, 593, 830, 925, 1138
CviAII CATG 8 cut(s) 190, 250, 533, 564, 619, 865, 1150, 1264
CviQI GTAC 8 cut(s) 148, 247, 355, 420, 593, 830, 925, 1138
DdeI CTNAG 2 cut(s) 501, 941
DpnI GATC 6 cut(s) 135, 473, 623, 650, 663, 1148
DpnII GATC 6 cut(s) 133, 471, 621, 648, 661, 1146
DraI TTTAAA 1 cut(s) 838
DraIII CACNNNGTG 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 1208
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoO109I RGGNCCY 2 cut(s) 960, 1242
EcoT38I GRGCYC 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 782
FaeI CATG 8 cut(s) 193, 253, 536, 567, 622, 868, 1153, 1267
FaqI GGGAC 2 cut(s) 556, 563
FatI CATG 8 cut(s) 189, 249, 532, 563, 618, 864, 1149, 1263
FbaI TGATCA 2 cut(s) 133, 1146
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 4 cut(s) 17, 336, 606, 1191
FokI GGATG 3 cut(s) 573, 712, 1244
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 4 cut(s) 17, 336, 606, 1191
FspBI CTAG 5 cut(s) 35, 225, 1305, 1310, 1340
GlaI GCGC 3 cut(s) 70, 276, 930
GluI GCNGC 4 cut(s) 17, 336, 606, 1191
GsuI CTGGAG 2 cut(s) 65, 222
HaeIII GGCC 2 cut(s) 961, 1244
HapII CCGG 3 cut(s) 731, 964, 1177
HhaI GCGC 3 cut(s) 71, 277, 931
Hin1II CATG 8 cut(s) 193, 253, 536, 567, 622, 868, 1153, 1267
Hin6I GCGC 3 cut(s) 69, 275, 929
HinP1I GCGC 3 cut(s) 69, 275, 929
HinfI GANTC 2 cut(s) 403, 1173
HpaII CCGG 3 cut(s) 731, 964, 1177
HphI GGTGA 2 cut(s) 1000, 1156
Hpy166II GTNNAC 6 cut(s) 164, 177, 322, 495, 925, 1063
Hpy188I TCNGA 2 cut(s) 432, 862
Hpy188III TCNNGA 6 cut(s) 76, 190, 665, 673, 1177, 1418
Hpy8I GTNNAC 6 cut(s) 164, 177, 322, 495, 925, 1063
HpyAV CCTTC 6 cut(s) 79, 1017, 1148, 1190, 1255, 1369
HpyCH4III ACNGT 5 cut(s) 59, 174, 330, 1067, 1366
HpyCH4IV ACGT 2 cut(s) 150, 828
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 560, 614, 812, 1250
HpyF3I CTNAG 2 cut(s) 501, 941
HpySE526I ACGT 2 cut(s) 150, 828
Hsp92II CATG 8 cut(s) 193, 253, 536, 567, 622, 868, 1153, 1267
HspAI GCGC 3 cut(s) 69, 275, 929
Kpn2I TCCGGA 1 cut(s) 1176
KpnI GGTACC 1 cut(s) 358
Ksp22I TGATCA 2 cut(s) 133, 1146
Kzo9I GATC 6 cut(s) 133, 471, 621, 648, 661, 1146
LmnI GCTCC 3 cut(s) 46, 54, 203
Lsp1109I GCAGC 1 cut(s) 322
MaeI CTAG 5 cut(s) 35, 225, 1305, 1310, 1340
MaeII ACGT 2 cut(s) 150, 828
MaeIII GTNAC 1 cut(s) 1283
MalI GATC 6 cut(s) 135, 473, 623, 650, 663, 1148
MboI GATC 6 cut(s) 133, 471, 621, 648, 661, 1146
MboII GAAGA 9 cut(s) 21, 194, 305, 308, 403, 524, 905, 914, 1237
MfeI CAATTG 2 cut(s) 11, 708
MflI RGATCY 1 cut(s) 648
MhlI GDGCHC 2 cut(s) 51, 1065
MroI TCCGGA 1 cut(s) 1176
MroXI GAANNNNTTC 2 cut(s) 318, 402
MseI TTAA 6 cut(s) 117, 156, 837, 843, 876, 935
MslI CAYNNNNRTG 2 cut(s) 254, 1028
MspI CCGG 3 cut(s) 731, 964, 1177
MspR9I CCNGG 2 cut(s) 731, 964
MunI CAATTG 2 cut(s) 11, 708
Mva1269I GAATGC 1 cut(s) 731
MvnI CGCG 3 cut(s) 71, 605, 929
MwoI GCNNNNNNNGC 5 cut(s) 16, 560, 614, 812, 1250
NciI CCSGG 2 cut(s) 731, 964
NdeII GATC 6 cut(s) 133, 471, 621, 648, 661, 1146
NlaIII CATG 8 cut(s) 193, 253, 536, 567, 622, 868, 1153, 1267
NlaIV GGNNCC 4 cut(s) 356, 650, 962, 1381
NspI RCATGY 3 cut(s) 253, 567, 868
NspV TTCGAA 1 cut(s) 891
PaeI GCATGC 1 cut(s) 567
PagI TCATGA 1 cut(s) 189
PciI ACATGT 1 cut(s) 249
PctI GAATGC 1 cut(s) 731
PdmI GAANNNNTTC 2 cut(s) 318, 402
PfeI GAWTC 2 cut(s) 403, 1173
PkrI GCNGC 4 cut(s) 18, 337, 607, 1192
PscI ACATGT 1 cut(s) 249
PshBI ATTAAT 2 cut(s) 876, 935
Psp124BI GAGCTC 1 cut(s) 51
PspN4I GGNNCC 4 cut(s) 356, 650, 962, 1381
PspPI GGNCC 2 cut(s) 960, 1242
PsrI GAACNNNNNNTAC 2 cut(s) 303, 335
PstI CTGCAG 2 cut(s) 393, 600
PstNI CAGNNNCTG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 648
RsaI GTAC 8 cut(s) 149, 248, 356, 421, 594, 831, 926, 1139
RsaNI GTAC 8 cut(s) 148, 247, 355, 420, 593, 830, 925, 1138
RseI CAYNNNNRTG 2 cut(s) 254, 1028
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 6 cut(s) 117, 156, 837, 843, 876, 935
SatI GCNGC 4 cut(s) 17, 336, 606, 1191
Sau3AI GATC 6 cut(s) 133, 471, 621, 648, 661, 1146
Sau96I GGNCC 2 cut(s) 960, 1242
ScrFI CCNGG 2 cut(s) 731, 964
SduI GDGCHC 2 cut(s) 51, 1065
SfcI CTRYAG 2 cut(s) 389, 596
SfuI TTCGAA 1 cut(s) 891
SmiMI CAYNNNNRTG 2 cut(s) 254, 1028
SphI GCATGC 1 cut(s) 567
SsiI CCGC 5 cut(s) 17, 605, 1190, 1193, 1401
SspMI CTAG 5 cut(s) 35, 225, 1305, 1310, 1340
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 729, 962
TaaI ACNGT 5 cut(s) 59, 174, 330, 1067, 1366
TaiI ACGT 2 cut(s) 153, 831
TaqI TCGA 5 cut(s) 474, 624, 891, 1104, 1216
TatI WGTACW 2 cut(s) 246, 1137
TauI GCSGC 3 cut(s) 19, 608, 1193
TfiI GAWTC 2 cut(s) 403, 1173
Tru1I TTAA 6 cut(s) 117, 156, 837, 843, 876, 935
Tru9I TTAA 6 cut(s) 117, 156, 837, 843, 876, 935
TscAI CASTG 3 cut(s) 48, 398, 1369
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 8 cut(s) 17, 141, 252, 525, 924, 1060, 1139, 1379
TspGWI ACGGA 2 cut(s) 452, 1403
TspRI CASTG 3 cut(s) 48, 398, 1369
VneI GTGCAC 1 cut(s) 1061
VspI ATTAAT 2 cut(s) 876, 935
XapI RAATTY 3 cut(s) 218, 241, 839
XceI RCATGY 3 cut(s) 253, 567, 868
XmiI GTMKAC 1 cut(s) 494
XmnI GAANNNNTTC 2 cut(s) 318, 402
XspI CTAG 5 cut(s) 35, 225, 1305, 1310, 1340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.