Rh7AG496900

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005917
Physical Location & Seq
Forward (+)
69671154 .. 69671585
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG496900.1

Sequence Viewer

Length: 432 bp
ATGAGGGTTGCTGGAGCAAGGTTTGTGCAATTCTCTAGTCAGGGGTATGAAGACTTTCACATGTCTATGCACCCTTTTGGCTATGCACTTTCAGGTCTTCGCGAAGAAGAAAAGAACGATGTAGAACTTGCTTGCTTACTGTTAGCTGCAGCAGAGAAAGTAGGGTACCAACAATTTGAAAGAGCAAGCAGATTGCTTCTGCAGTGTGAATGGATTGCATCCTTCAAAGGCACTCCTGTTCCAAGAGTTGTGTGCTACTTCGCTAAGGCACTTGGTGAGAGGATCGAGAAAGAAACAGGACTTTATGCATCTAAGGGAAATGAAGAAATGTCTCAACATGTACATGGTATGGGAACAAACCTTGCAGTCATCGATGCCACCAAGAAGTCCCTTTCCATCCAGTACTGGAGTTCGCGGCAATACAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

143

Amino Acids

16.15

Weight (kDa)

7.73

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 46 - 110 3.7e-07 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AccII CGCG 2 cut(s) 102, 415
AciI CCGC 1 cut(s) 415
AclWI GGATC 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 275
AfaI GTAC 3 cut(s) 167, 342, 404
AflIII ACRYGT 2 cut(s) 60, 337
AgsI TTSAA 2 cut(s) 179, 226
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 146, 149
Asp700I GAANNNNTTC 1 cut(s) 54
Asp718I GGTACC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 287
BanI GGYRCC 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 57, 89
BbvI GCAGC 2 cut(s) 133, 161
BccI CCATC 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 2 cut(s) 147, 200
BisI GCNGC 3 cut(s) 147, 150, 416
BlsI GCNGC 3 cut(s) 148, 151, 417
BmcAI AGTACT 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 167
BmsI GCATC 3 cut(s) 227, 317, 364
BpiI GAAGAC 2 cut(s) 57, 89
BpmI CTGGAG 2 cut(s) 33, 427
Bpu10I CCTNAGC 1 cut(s) 264
Bsa29I ATCGAT 1 cut(s) 372
Bse1I ACTGG 2 cut(s) 400, 410
BseCI ATCGAT 1 cut(s) 372
BseGI GGATG 2 cut(s) 218, 396
BseNI ACTGG 2 cut(s) 400, 410
BseXI GCAGC 2 cut(s) 133, 161
Bsh1236I CGCG 2 cut(s) 102, 415
BshNI GGYRCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 372
BslFI GGGAC 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 1 cut(s) 282
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 372
BspFNI CGCG 2 cut(s) 102, 415
BspLI GGNNCC 1 cut(s) 167
BspMAI CTGCAG 2 cut(s) 151, 204
BspPI GGATC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 340
BsrI ACTGG 2 cut(s) 400, 410
BssMI GATC 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 141
BstAUI TGTACA 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 133, 187
BstDEI CTNAG 2 cut(s) 264, 312
BstF5I GGATG 2 cut(s) 218, 396
BstFNI CGCG 2 cut(s) 102, 415
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 1 cut(s) 282
BstNSI RCATGY 2 cut(s) 64, 341
BstSFI CTRYAG 2 cut(s) 147, 200
BstUI CGCG 2 cut(s) 102, 415
BstV1I GCAGC 2 cut(s) 133, 161
BstV2I GAAGAC 2 cut(s) 57, 89
Bsu15I ATCGAT 1 cut(s) 372
BsuTUI ATCGAT 1 cut(s) 372
BtsCI GGATG 2 cut(s) 218, 396
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 133, 187
ClaI ATCGAT 1 cut(s) 372
Csp6I GTAC 3 cut(s) 166, 341, 403
CviAII CATG 4 cut(s) 61, 338, 344, 429
CviJI RGCY 2 cut(s) 81, 146
CviKI_1 RGCY 2 cut(s) 81, 146
CviQI GTAC 3 cut(s) 166, 341, 403
DdeI CTNAG 2 cut(s) 264, 312
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
DraIII CACNNNGTG 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 310
FaeI CATG 4 cut(s) 64, 341, 347, 432
FaiI YATR 9 cut(s) 48, 62, 68, 84, 306, 339, 345, 350, 430
FaqI GGGAC 1 cut(s) 373
FatI CATG 4 cut(s) 60, 337, 343, 428
Fnu4HI GCNGC 3 cut(s) 147, 150, 416
FokI GGATG 2 cut(s) 205, 383
Fsp4HI GCNGC 3 cut(s) 147, 150, 416
FspBI CTAG 1 cut(s) 36
GluI GCNGC 3 cut(s) 147, 150, 416
GsuI CTGGAG 2 cut(s) 33, 427
Hin1II CATG 4 cut(s) 64, 341, 347, 432
HphI GGTGA 1 cut(s) 287
Hpy188III TCNNGA 2 cut(s) 101, 286
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 8 cut(s) 28, 70, 86, 149, 202, 218, 308, 365
HpyF3I CTNAG 2 cut(s) 264, 312
Hsp92II CATG 4 cut(s) 64, 341, 347, 432
KpnI GGTACC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 6 cut(s) 26, 78, 249, 282, 391, 413
Lsp1109I GCAGC 2 cut(s) 133, 161
LweI GCATC 3 cut(s) 227, 317, 364
MaeI CTAG 1 cut(s) 36
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 5 cut(s) 62, 89, 116, 119, 335
MluCI AATT 2 cut(s) 29, 173
MnlI CCTC 1 cut(s) 273
Mph1103I ATGCAT 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 54
MslI CAYNNNNRTG 2 cut(s) 65, 342
MvnI CGCG 2 cut(s) 102, 415
NdeII GATC 1 cut(s) 282
NlaIII CATG 4 cut(s) 64, 341, 347, 432
NlaIV GGNNCC 1 cut(s) 167
NruI TCGCGA 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 2 cut(s) 64, 341
PciI ACATGT 2 cut(s) 60, 337
PdmI GAANNNNTTC 1 cut(s) 54
PkrI GCNGC 3 cut(s) 148, 151, 417
PscI ACATGT 2 cut(s) 60, 337
PspN4I GGNNCC 1 cut(s) 167
PstI CTGCAG 2 cut(s) 151, 204
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 3 cut(s) 167, 342, 404
RsaNI GTAC 3 cut(s) 166, 341, 403
RseI CAYNNNNRTG 2 cut(s) 65, 342
SatI GCNGC 3 cut(s) 147, 150, 416
Sau3AI GATC 1 cut(s) 282
ScaI AGTACT 1 cut(s) 404
SetI ASST 4 cut(s) 23, 97, 148, 363
SfaNI GCATC 3 cut(s) 227, 317, 364
SfcI CTRYAG 2 cut(s) 147, 200
SmiMI CAYNNNNRTG 2 cut(s) 65, 342
Sse9I AATT 2 cut(s) 29, 173
SsiI CCGC 1 cut(s) 415
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 285, 372
TasI AATT 2 cut(s) 29, 173
TatI WGTACW 2 cut(s) 340, 402
TauI GCSGC 1 cut(s) 418
TscAI CASTG 1 cut(s) 209
TseI GCWGC 2 cut(s) 146, 149
TspDTI ATGAA 2 cut(s) 63, 336
TspRI CASTG 1 cut(s) 209
XceI RCATGY 2 cut(s) 64, 341
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 404
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.