Rorug07G0342200

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005917
Physical Location & Seq
Forward (+)
37658419 .. 37659269
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0342200.1

Sequence Viewer

Length: 507 bp
ATGGCACCAAAATCTGATCTTTCTCTTTTCACAGTCACTCTCCTCCTCCTCCTTCTCGCCTTCTTTTCTTTCCTATCTAATGGTTGTCACAAAGGTGACAAGGTCAACGGCGTCAATGACCTCAAGAAGTACCTTCAAAAGTTCGGTTACTTAAACTACGAGAACCACAGACATTCTGATGACAATGATTTTGACGAGCTCTTGGAGGAAGCCGTCAAGACTAACCAGCTCAATTTCCACCTCAAGTCCACCGGAACGTTGGACGACAAAACCATATCACAGATGATCATGCCTCGTTTTGGTGTGCCCGATATCATCAATGGCACCTCATCCATGCGATCAGCCAAGATATATAAAGCGCCATCACACTACCCTCCTCCTTTGCGCACTTGGATGCCAGAAGCTACACTCCTAGTAGCAATTTCAAAAGTAATGTCAAGCAATCTGACGCAGCTCCTGGGGTCACCGTCTTTCCGGTTGTCTCTACAACAGCAATATGAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GRAS

Protein Analysis

168

Amino Acids

19.02

Weight (kDa)

7.85

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 36 - 95 2.9e-10 Putative peptidoglycan binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 386
AccB1I GGYRCC 2 cut(s) 4, 323
AclI AACGTT 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 2 cut(s) 137, 426
AjnI CCWGG 1 cut(s) 456
AleI CACNNNNGTG 1 cut(s) 93
AluBI AGCT 4 cut(s) 199, 229, 404, 454
AluI AGCT 4 cut(s) 199, 229, 404, 454
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 457
ApeKI GCWGC 1 cut(s) 451
ArsI GACNNNNNNTTYG 4 cut(s) 173, 205, 419, 451
AspLEI GCGC 2 cut(s) 361, 387
AsuHPI GGTGA 2 cut(s) 107, 456
BaeGI GKGCMC 1 cut(s) 309
BanI GGYRCC 2 cut(s) 4, 323
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 463
BccI CCATC 1 cut(s) 370
BceAI ACGGC 2 cut(s) 124, 197
BciT130I CCWGG 1 cut(s) 458
BclI TGATCA 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 486
BfaI CTAG 1 cut(s) 413
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
Bme1390I CCNGG 1 cut(s) 458
BmiI GGNNCC 2 cut(s) 6, 325
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 107, 227
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 457
BsaWI WCCGGW 2 cut(s) 251, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 458
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 2 cut(s) 329, 399
BseLI CCNNNNNNNGG 1 cut(s) 299
BseRI GAGGAG 4 cut(s) 32, 35, 38, 366
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 1 cut(s) 463
BshNI GGYRCC 2 cut(s) 4, 323
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 2 cut(s) 252, 475
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 486
Bsp1286I GDGCHC 2 cut(s) 201, 309
Bsp143I GATC 3 cut(s) 16, 285, 338
BspLI GGNNCC 2 cut(s) 6, 325
BspT107I GGYRCC 2 cut(s) 4, 323
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 3 cut(s) 16, 285, 338
BssNI GRCGYC 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 2 cut(s) 34, 468
BstACI GRCGYC 1 cut(s) 111
BstEII GGTNACC 1 cut(s) 462
BstF5I GGATG 2 cut(s) 329, 399
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 361, 387
BstKTI GATC 3 cut(s) 19, 288, 341
BstMAI GTCTC 1 cut(s) 486
BstMBI GATC 3 cut(s) 16, 285, 338
BstMWI GCNNNNNNNGC 1 cut(s) 499
BstNI CCWGG 1 cut(s) 458
BstPI GGTNACC 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 463
BtsCI GGATG 2 cut(s) 329, 399
CaiI CAGNNNCTG 1 cut(s) 457
CfoI GCGC 2 cut(s) 361, 387
CseI GACGC 2 cut(s) 100, 457
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 289, 334
CviJI RGCY 6 cut(s) 199, 212, 229, 344, 404, 454
CviKI_1 RGCY 6 cut(s) 199, 212, 229, 344, 404, 454
CviQI GTAC 1 cut(s) 130
DpnI GATC 3 cut(s) 18, 287, 340
DpnII GATC 3 cut(s) 16, 285, 338
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco32I GATATC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 199
Eco91I GGTNACC 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 456
EcoRV GATATC 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 2 cut(s) 292, 337
FaiI YATR 6 cut(s) 275, 290, 335, 352, 354, 498
FatI CATG 2 cut(s) 288, 333
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 2 cut(s) 316, 406
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 1 cut(s) 413
FspI TGCGCA 1 cut(s) 386
GlaI GCGC 2 cut(s) 360, 386
GluI GCNGC 1 cut(s) 452
HaeII RGCGCY 1 cut(s) 362
HapII CCGG 2 cut(s) 252, 475
HgaI GACGC 2 cut(s) 100, 457
HhaI GCGC 2 cut(s) 361, 387
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 2 cut(s) 292, 337
Hin6I GCGC 2 cut(s) 359, 385
HinP1I GCGC 2 cut(s) 359, 385
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HpaII CCGG 2 cut(s) 252, 475
HphI GGTGA 2 cut(s) 107, 456
Hpy166II GTNNAC 2 cut(s) 106, 249
Hpy188I TCNGA 3 cut(s) 16, 178, 447
Hpy188III TCNNGA 2 cut(s) 124, 217
Hpy8I GTNNAC 2 cut(s) 106, 249
HpyAV CCTTC 3 cut(s) 62, 70, 143
HpyCH4III ACNGT 2 cut(s) 34, 468
HpyCH4IV ACGT 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 499
HpySE526I ACGT 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 2 cut(s) 292, 337
HspAI GCGC 2 cut(s) 359, 385
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 3 cut(s) 16, 285, 338
LmnI GCTCC 1 cut(s) 459
LpnPI CCDG 6 cut(s) 239, 265, 411, 443, 470, 488
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 1 cut(s) 384
MaeI CTAG 1 cut(s) 413
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 5 cut(s) 34, 86, 95, 146, 462
MalI GATC 3 cut(s) 18, 287, 340
MboI GATC 3 cut(s) 16, 285, 338
MhlI GDGCHC 2 cut(s) 201, 309
MluCI AATT 2 cut(s) 232, 420
MmeI TCCRAC 1 cut(s) 240
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 3 cut(s) 93, 177, 392
MspI CCGG 2 cut(s) 252, 475
MspR9I CCNGG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 1 cut(s) 499
NdeII GATC 3 cut(s) 16, 285, 338
NlaIII CATG 2 cut(s) 292, 337
NlaIV GGNNCC 2 cut(s) 6, 325
NmuCI GTSAC 4 cut(s) 34, 86, 95, 462
NsbI TGCGCA 1 cut(s) 386
OliI CACNNNNGTG 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 201
Psp1406I AACGTT 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 456
PspEI GGTNACC 1 cut(s) 462
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 2 cut(s) 6, 325
PstNI CAGNNNCTG 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 3 cut(s) 93, 177, 392
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 3 cut(s) 16, 285, 338
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 2 cut(s) 201, 309
SfaNI GCATC 1 cut(s) 384
SmiMI CAYNNNNRTG 3 cut(s) 93, 177, 392
SmlI CTYRAG 2 cut(s) 122, 242
SmoI CTYRAG 2 cut(s) 122, 242
Sse9I AATT 2 cut(s) 232, 420
SspMI CTAG 1 cut(s) 413
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 34, 468
TaiI ACGT 1 cut(s) 260
TasI AATT 2 cut(s) 232, 420
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseFI GTSAC 4 cut(s) 34, 86, 95, 462
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 4 cut(s) 34, 86, 95, 462
Tth111I GACNNNGTC 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.