Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005917

Physical Location & Seq

Genomic Coordinates Forward (+)

37656045 .. 37657310

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0342100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCATCCAAATCTAATCTTTCTCTCTTCAGTATCACTCTCCTCCTTGCCCTTCTTACTCTCGTCTCTTATGCAACTGCTTCTCATCCCCACAACAAGAGCTCTTCCCCATTTGAGTTCCTTGAGCATCTCAAGGGTTGCCACAAAGGTGATAAGGTCAAGGGCATCAATGACCTCAAGAAATACCTTGAAAAGTACGGTTACTTGAAATACAAGAATCACAGTCATTCGGACGATGATGATTTTGACGACCTTTTGGAGGAAGCCATCAAGACTTACCAGATCAATTACCACCTCAAGTCCACCGGAACATTGGATGGCAAAACAGTGTCGAAGATGATGACGCCTCGTTGTGGCGTGCCGGATATCATCAATGGCACCTCGTCCATGCGATCAGCCAAGAAAAGGCACCACCATGGTTCAATTCATACCACTGCTCACTACTCATTTTTCGAGGGAAATCCAAAATGGCCTTCCTCTAAATACCATCTCACTTACGGTTTCCTCCCCAACACCCCATCCGAAGCCACGGGCTCTGTCGCACGGGCTTTCGCAACATGGGCTGGGAACACTCACTTCACGTTCAGCCAGTCACAAAGTTACGAGAGTGCGGATTTGAAGATTAGTTTTCATAAGGGTGATCATGGAGACGGGAATCCATTTGATGGCCCCGGCGGGATCCTAGCCCATGCTTTTATCCCGTCGGATGGAAGATTCCACTACGACGCAGATGAGCCTTGGTCTGTGGGTGCTACACCAGGTGCTTTTGACTTGGAGACGGTGGCTTTGCATGAAATAGGGCACCTTCTGGGACTTGGACATAGCTCAGTGGAGGGAGCTATCATGGCCCCAGGTATTCCCCAGGGAGTGACTCGAAGTTTGCATGGGGACGATGTTCAAGGAATCAAGGCTTTATACAACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GRAS

Protein Analysis

308

Amino Acids

33.67

Weight (kDa)

6.61

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	56 - 113	6.2e-10	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	156 - 306	7e-46	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39080 FvH4_5g39090
malus_domestica	MD03G1293100.v1.1 MD03G1293700.v1.1
prunus_persica	Prupe.8G266100_v2.0.a1
pyrus_communis	pycom03g23240
rosa_chinensis	RchiOBHm_Chr7g0241071 RchiOBHm_Chr7g0241091
rosa_laevigata	RLG00000000598 RLG00000000600
rosa_multiflora	Rmu_sc0003187.1_g000003 Rmu_sc0003187.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219280 Rroxscaffold_3G00219290
rosa_rugosa	Rorug07G0342100 Rorug07G0342200
rosa_samantha	Rh7AG496900 Rh7AG497300 Rh7AG497400 Rh7BG468000 Rh7BG468200 Rh7CG514000 Rh7CG514300 Rh7DG481300 Rh7DG481400
rosa_wichuraiana	Rw0G005790 Rw0G009720 Rw7G041960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	377, 408, 801
AccB7I	CCANNNNNTGG	1 cut(s)	665
AciI	CCGC	2 cut(s)	611, 675
AclWI	GGATC	2 cut(s)	673, 686
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	344
AdeI	CACNNNGTG	1 cut(s)	761
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	5 cut(s)	259, 353, 405, 665, 707
AgsI	TTSAA	5 cut(s)	191, 208, 423, 619, 899
AjnI	CCWGG	3 cut(s)	757, 850, 861
AjuI	GAANNNNNNNTTGG	2 cut(s)	457, 489
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	102, 825, 839
AluI	AGCT	3 cut(s)	102, 825, 839
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	3 cut(s)	70, 642, 770
AlwI	GGATC	2 cut(s)	673, 686
AoxI	GGCC	3 cut(s)	470, 667, 846
ArsI	GACNNNNNNTTYG	4 cut(s)	769, 801, 862, 894
AspS9I	GGNCC	2 cut(s)	668, 847
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	2 cut(s)	161, 650
BaeGI	GKGCMC	1 cut(s)	804
BamHI	GGATCC	1 cut(s)	678
BanI	GGYRCC	3 cut(s)	377, 408, 801
BanII	GRGCYC	2 cut(s)	104, 536
Bbv12I	GWGCWC	1 cut(s)	104
BccI	CCATC	6 cut(s)	275, 311, 495, 526, 659, 701
BciT130I	CCWGG	3 cut(s)	759, 852, 863
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	672
BcoDI	GTCTC	3 cut(s)	70, 642, 770
BfaI	CTAG	1 cut(s)	683
Bme1390I	CCNGG	4 cut(s)	672, 759, 852, 863
BmgT120I	GGNCC	2 cut(s)	668, 847
BmiI	GGNNCC	6 cut(s)	379, 410, 670, 680, 803, 849
BmrFI	CCNGG	4 cut(s)	672, 759, 852, 863
BmsI	GCATC	3 cut(s)	14, 136, 174
BpuEI	CTTGAG	4 cut(s)	116, 143, 161, 281
BpuMI	CCSGG	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	7 cut(s)	415, 528, 670, 737, 850, 861, 862
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	5 cut(s)	259, 353, 405, 665, 707
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	3 cut(s)	759, 852, 863
BseDI	CCNNGG	7 cut(s)	415, 528, 670, 737, 850, 861, 862
BseGI	GGATG	5 cut(s)	5, 85, 322, 518, 712
BseLI	CCNNNNNNNGG	5 cut(s)	259, 353, 405, 665, 707
BseMII	CTCAG	1 cut(s)	840
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	804
BseYI	CCCAGC	1 cut(s)	563
BshFI	GGCC	3 cut(s)	472, 669, 848
BshNI	GGYRCC	3 cut(s)	377, 408, 801
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	306, 362, 672
BslFI	GGGAC	2 cut(s)	825, 902
BslI	CCNNNNNNNGG	5 cut(s)	259, 353, 405, 665, 707
BsmAI	GTCTC	3 cut(s)	70, 642, 770
BsmBI	CGTCTC	3 cut(s)	70, 642, 770
BsmFI	GGGAC	2 cut(s)	825, 902
BsnI	GGCC	3 cut(s)	472, 669, 848
Bsp1286I	GDGCHC	3 cut(s)	104, 536, 804
Bsp143I	GATC	4 cut(s)	282, 392, 640, 678
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	2 cut(s)	611, 675
BspANI	GGCC	3 cut(s)	472, 669, 848
BspCNI	CTCAG	1 cut(s)	839
BspLI	GGNNCC	6 cut(s)	379, 410, 670, 680, 803, 849
BspPI	GGATC	2 cut(s)	673, 686
BspQI	GCTCTTC	1 cut(s)	109
BspT107I	GGYRCC	3 cut(s)	377, 408, 801
BsrI	ACTGG	1 cut(s)	589
BssECI	CCNNGG	7 cut(s)	415, 528, 670, 737, 850, 861, 862
BssMI	GATC	4 cut(s)	282, 392, 640, 678
BssNI	GRCGYC	1 cut(s)	344
BssT1I	CCWWGG	2 cut(s)	415, 737
Bst2UI	CCWGG	3 cut(s)	759, 852, 863
Bst4CI	ACNGT	5 cut(s)	200, 224, 328, 500, 781
Bst6I	CTCTTC	2 cut(s)	32, 109
BstACI	GRCGYC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	826
BstDSI	CCRYGG	2 cut(s)	415, 528
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	5 cut(s)	5, 85, 322, 518, 712
BstKTI	GATC	4 cut(s)	285, 395, 643, 681
BstMAI	GTCTC	3 cut(s)	70, 642, 770
BstMBI	GATC	4 cut(s)	282, 392, 640, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 845
BstNI	CCWGG	3 cut(s)	759, 852, 863
BstSCI	CCNGG	4 cut(s)	670, 757, 850, 861
BstSLI	GKGCMC	1 cut(s)	804
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	472, 669, 848
BtgI	CCRYGG	2 cut(s)	415, 528
BtsCI	GGATG	5 cut(s)	5, 85, 322, 518, 712
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	333, 432, 834
Cac8I	GCNNGC	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	668, 847
CseI	GACGC	2 cut(s)	352, 734
CsiI	ACCWGGT	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	8 cut(s)	388, 416, 558, 644, 689, 791, 844, 884
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	826
DpnI	GATC	4 cut(s)	284, 394, 642, 680
DpnII	GATC	4 cut(s)	282, 392, 640, 678
DraIII	CACNNNGTG	1 cut(s)	761
Eam1104I	CTCTTC	2 cut(s)	32, 109
EarI	CTCTTC	2 cut(s)	32, 109
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	415, 737
Eco24I	GRGCYC	2 cut(s)	104, 536
Eco32I	GATATC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	757, 850, 861
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	415, 737
EcoT38I	GRGCYC	2 cut(s)	104, 536
ErhI	CCWWGG	2 cut(s)	415, 737
Esp3I	CGTCTC	3 cut(s)	70, 642, 770
FaeI	CATG	8 cut(s)	391, 419, 561, 647, 692, 794, 847, 887
FaqI	GGGAC	2 cut(s)	825, 902
FatI	CATG	8 cut(s)	387, 415, 557, 643, 688, 790, 843, 883
FauI	CCCGC	1 cut(s)	668
FbaI	TGATCA	1 cut(s)	640
FokI	GGATG	4 cut(s)	72, 329, 505, 719
FriOI	GRGCYC	2 cut(s)	104, 536
FspBI	CTAG	1 cut(s)	683
GsaI	CCCAGC	1 cut(s)	567
HaeIII	GGCC	3 cut(s)	472, 669, 848
HapII	CCGG	3 cut(s)	306, 362, 672
HgaI	GACGC	2 cut(s)	352, 734
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	8 cut(s)	391, 419, 561, 647, 692, 794, 847, 887
HinfI	GANTC	5 cut(s)	217, 655, 714, 871, 903
HpaII	CCGG	3 cut(s)	306, 362, 672
HphI	GGTGA	2 cut(s)	161, 650
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	4 cut(s)	232, 523, 706, 926
Hpy188III	TCNNGA	2 cut(s)	178, 271
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	2 cut(s)	706, 728
HpyAV	CCTTC	3 cut(s)	62, 483, 815
HpyCH4III	ACNGT	5 cut(s)	200, 224, 328, 500, 781
HpyCH4IV	ACGT	2 cut(s)	581, 921
HpyCH4V	TGCA	3 cut(s)	74, 790, 883
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 845
HpyF3I	CTNAG	1 cut(s)	826
HpySE526I	ACGT	2 cut(s)	581, 921
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	8 cut(s)	391, 419, 561, 647, 692, 794, 847, 887
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	4 cut(s)	282, 392, 640, 678
LguI	GCTCTTC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	836
LweI	GCATC	3 cut(s)	14, 136, 174
MabI	ACCWGGT	1 cut(s)	757
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	2 cut(s)	581, 921
MaeIII	GTNAC	4 cut(s)	200, 591, 599, 868
MalI	GATC	4 cut(s)	284, 394, 642, 680
MboI	GATC	4 cut(s)	282, 392, 640, 678
MboII	GAAGA	5 cut(s)	19, 96, 346, 631, 723
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	3 cut(s)	104, 536, 804
MluCI	AATT	2 cut(s)	286, 423
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	684
MslI	CAYNNNNRTG	3 cut(s)	147, 414, 636
MspI	CCGG	3 cut(s)	306, 362, 672
MspR9I	CCNGG	4 cut(s)	672, 759, 852, 863
MvaI	CCWGG	3 cut(s)	759, 852, 863
MwoI	GCNNNNNNNGC	2 cut(s)	560, 845
NciI	CCSGG	1 cut(s)	672
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	4 cut(s)	282, 392, 640, 678
NlaIII	CATG	8 cut(s)	391, 419, 561, 647, 692, 794, 847, 887
NlaIV	GGNNCC	6 cut(s)	379, 410, 670, 680, 803, 849
NmuCI	GTSAC	2 cut(s)	591, 868
OliI	CACNNNNGTG	1 cut(s)	147
PasI	CCCWGGG	1 cut(s)	862
PciSI	GCTCTTC	1 cut(s)	109
PfeI	GAWTC	4 cut(s)	217, 655, 714, 903
PflMI	CCANNNNNTGG	1 cut(s)	665
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
Psp124BI	GAGCTC	1 cut(s)	104
Psp6I	CCWGG	3 cut(s)	757, 850, 861
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	3 cut(s)	757, 850, 861
PspN4I	GGNNCC	6 cut(s)	379, 410, 670, 680, 803, 849
PspPI	GGNCC	2 cut(s)	668, 847
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	3 cut(s)	147, 414, 636
SacI	GAGCTC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	109
Sau3AI	GATC	4 cut(s)	282, 392, 640, 678
Sau96I	GGNCC	2 cut(s)	668, 847
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	4 cut(s)	672, 759, 852, 863
SduI	GDGCHC	3 cut(s)	104, 536, 804
SexAI	ACCWGGT	1 cut(s)	757
SfaNI	GCATC	3 cut(s)	14, 136, 174
SmiMI	CAYNNNNRTG	3 cut(s)	147, 414, 636
SmlI	CTYRAG	4 cut(s)	122, 131, 176, 296
SmoI	CTYRAG	4 cut(s)	122, 131, 176, 296
Sse9I	AATT	2 cut(s)	286, 423
SsiI	CCGC	2 cut(s)	611, 675
SspMI	CTAG	1 cut(s)	683
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	4 cut(s)	670, 757, 850, 861
StyI	CCWWGG	2 cut(s)	415, 737
TaaI	ACNGT	5 cut(s)	200, 224, 328, 500, 781
TaiI	ACGT	2 cut(s)	584, 924
TaqI	TCGA	3 cut(s)	332, 453, 874
TasI	AATT	2 cut(s)	286, 423
TfiI	GAWTC	4 cut(s)	217, 655, 714, 903
TscAI	CASTG	3 cut(s)	333, 439, 834
TseFI	GTSAC	2 cut(s)	591, 868
Tsp45I	GTSAC	2 cut(s)	591, 868
TspDTI	ATGAA	3 cut(s)	416, 620, 807
TspRI	CASTG	3 cut(s)	333, 439, 834
Van91I	CCANNNNNTGG	1 cut(s)	665
XagI	CCTNNNNNAGG	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.