Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Forward (+)

17522820 .. 17523954

Gene Structure 1135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGTCCTGCACAGAGAGTGATGACACAGCCGATACTCCACCCCCGACAAACAGTATTTACAAGGACCCAGATGACGGCCGGCAGCGATTCTTGCTCGAATTGGAGTTCGTCCAGTGCCTCGCAAATCCCACCTACATTCACTATTTGGCTCAGAATCGTTACTTTGAGGATGATGCTTTCATTGGGTACTTGAAACATCTTCAGTATTGGCAGCGTCCCGAGTATACGAGATTTATAATGTATCCTCATTACCTGTTTTTTCTTGTGCAACTTCAAAATGCGAACTTTCGCGCTGCAATGGCACATCCTGGAAACAACGAATTGGCACATAGGCAGCAATTCTACTTCTGGAAGAACTATAGGAACAACCGTTTGAAACATATATTACCGAGACCCCTCCCTGAACCCGTTCCTGCACTTCCACCACCTGCACCAACTCGGCAAGCTGTGCCTCCCGTTCCACCTGTGCCGGCTACTTCTGTTTCTGTTACAGCAATTGCTCCAGCCCCTTCTCCTATGCAGTATGCTATGCCCCCTGGGTCTGCTCCAAAAGTTGAACCGAGGAATAGTGGGGTTGATCGACGAAAGAGGAAGTATGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:0140110 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med31

Protein Analysis

203

Amino Acids

23.28

Weight (kDa)

9.2

Isoelectric Point (pI)

64.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med31	PF05669	29 - 121	2.8e-31	SOH1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	196, 278, 379, 560
AjnI	CCWGG	2 cut(s)	310, 538
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
Alw26I	GTCTC	1 cut(s)	388
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	4 cut(s)	85, 214, 296, 337
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	97, 226, 283, 349
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	312, 540
BciVI	GTATCC	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	388
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	4 cut(s)	86, 215, 297, 338
BlsI	GCNGC	4 cut(s)	87, 216, 298, 339
Bme1390I	CCNGG	2 cut(s)	312, 540
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	312, 540
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	538, 539, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	2 cut(s)	81, 472
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	312, 540
BseDI	CCNNGG	3 cut(s)	538, 539, 563
BseGI	GGATG	2 cut(s)	178, 307
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	115
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	4 cut(s)	97, 226, 283, 349
BsgI	GTGCAG	2 cut(s)	402, 417
Bsh1236I	CGCG	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	82, 473
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	81
Bso31I	GGTCTC	1 cut(s)	388
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	580
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	2 cut(s)	81, 472
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	2 cut(s)	81, 472
BssECI	CCNNGG	3 cut(s)	538, 539, 563
BssMI	GATC	1 cut(s)	580
BssNAI	GTATAC	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	5
Bst1107I	GTATAC	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	312, 540
Bst4CI	ACNGT	2 cut(s)	56, 374
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstC8I	GCNNGC	3 cut(s)	83, 447, 474
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	178, 307
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	580
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 302, 451
BstNI	CCWGG	2 cut(s)	312, 540
BstSCI	CCNGG	2 cut(s)	310, 538
BstSFI	CTRYAG	1 cut(s)	361
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	4 cut(s)	97, 226, 283, 349
BstZ17I	GTATAC	1 cut(s)	228
BstZI	CGGCCG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	178, 307
BtsIMutI	CAGTG	1 cut(s)	122
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	83, 447, 474
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	2 cut(s)	81, 472
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	190
CviJI	RGCY	6 cut(s)	32, 81, 152, 449, 476, 509
CviKI_1	RGCY	6 cut(s)	32, 81, 152, 449, 476, 509
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	79
EagI	CGGCCG	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	67
Eco52I	CGGCCG	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	310, 538
FaqI	GGGAC	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	4 cut(s)	86, 215, 297, 338
FokI	GGATG	2 cut(s)	185, 294
Fsp4HI	GCNGC	4 cut(s)	86, 215, 297, 338
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	4 cut(s)	86, 215, 297, 338
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	2 cut(s)	82, 473
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	90, 157
HpaII	CCGG	2 cut(s)	82, 473
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	221, 352
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	1 cut(s)	522
HpyCH4III	ACNGT	2 cut(s)	56, 374
HpyCH4V	TGCA	6 cut(s)	12, 271, 299, 419, 434, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 302, 451
HpyF3I	CTNAG	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	294
KroI	GCCGGC	2 cut(s)	81, 472
KroNI	GCCGGC	2 cut(s)	83, 474
Kzo9I	GATC	1 cut(s)	580
LmnI	GCTCC	2 cut(s)	508, 553
Lsp1109I	GCAGC	4 cut(s)	97, 226, 283, 349
LweI	GCATC	1 cut(s)	166
MaeIII	GTNAC	2 cut(s)	161, 490
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MboII	GAAGA	2 cut(s)	194, 367
MfeI	CAATTG	1 cut(s)	498
MluCI	AATT	5 cut(s)	101, 323, 341, 498, 604
MnlI	CCTC	7 cut(s)	131, 163, 258, 410, 465, 558, 585
MroNI	GCCGGC	2 cut(s)	81, 472
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	2 cut(s)	603, 607
MspI	CCGG	2 cut(s)	82, 473
MspR9I	CCNGG	2 cut(s)	312, 540
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	2 cut(s)	312, 540
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	94, 302, 451
NaeI	GCCGGC	2 cut(s)	83, 474
NdeII	GATC	1 cut(s)	580
NgoMIV	GCCGGC	2 cut(s)	81, 472
NlaIV	GGNNCC	1 cut(s)	69
NmeAIII	GCCGAG	1 cut(s)	421
PacI	TTAATTAA	1 cut(s)	607
PaqCI	CACCTGC	1 cut(s)	439
PasI	CCCWGGG	1 cut(s)	539
PdiI	GCCGGC	2 cut(s)	83, 474
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	90, 157
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	87, 216, 298, 339
PpuMI	RGGWCCY	1 cut(s)	67
PsiI	TTATAA	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	310, 538
PspGI	CCWGG	2 cut(s)	310, 538
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	603, 607
SatI	GCNGC	4 cut(s)	86, 215, 297, 338
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	312, 540
SetI	ASST	5 cut(s)	137, 258, 433, 451, 469
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	5 cut(s)	101, 323, 341, 498, 604
StyD4I	CCNGG	2 cut(s)	310, 538
TaaI	ACNGT	2 cut(s)	56, 374
TaqI	TCGA	2 cut(s)	99, 583
TasI	AATT	5 cut(s)	101, 323, 341, 498, 604
TfiI	GAWTC	2 cut(s)	90, 157
Tru1I	TTAA	2 cut(s)	603, 607
Tru9I	TTAA	2 cut(s)	603, 607
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	4 cut(s)	85, 214, 296, 337
TspDTI	ATGAA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.