pycom01g19270

Cell number regulator 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007068
Physical Location & Seq
Reverse (-)
18002663 .. 18004661
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 720 bp
ATGGCGGATGGGACTGCGCACTCGCGGTATGTGAAGCTGACGAAAGAACAAGCGCCGGCGGAGGACATTAATCCCGGCGAGCTCAATCAGCCCATCGAAGTTCCTCAGTTGAATGTTCACAGGTGTAACGAATGTGGACAGCCTTTACCCGACAGCTATCAGGCCCCTGCAGATGAGCCTTGGACAACCGGAATTTTTGGCTGTGCTGAAGATAGAGAAAGTTGCTTGACAGGGTTATTTTGTCCATGTGTTCTGTTTGGGCGCAATGTTGAGAGCCTAAGAGACGATGTCCCTTGGAACAGACCTTGCATTTGTCATGCCGTTTGTATTGAAGGTGGTATGGCTCTGGCAGCTTTAACTGCAATCTTCCATGGCATTGACCCAAGGACTTCATTTCTTATTTGCGAGGGTCTGTTATTTTCTTGGTGGATGTGTGGGATATATACAGGTCTTGTCCGGCAATCCTTGCAGAAGAAGTATCATCTAAAGAACTCGCCGTGTGACCCATGCTTGACACACTGCTGCTTGCACTGGTGCGCCTTGTGCCAAGAGCACCGGGAGATGAAGGGACGCCTCTCGGACAATGCTGTGATGCCAATGACTGTCGTCAACCCACCCCAAGTTCAACAGATGAAGTCTGCTGACGACAACCAGGACTCTGCTGCACCATCCTCTACCAGCAATAATGGCCACACCAATATGGAGATGCAGGCGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

240

Amino Acids

26.46

Weight (kDa)

5.28

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 61 - 187 2.3e-27 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 18
AccII CGCG 1 cut(s) 25
AciI CCGC 3 cut(s) 5, 25, 59
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 571
AgsI TTSAA 3 cut(s) 112, 332, 626
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 4 cut(s) 37, 82, 156, 353
AluI AGCT 4 cut(s) 37, 82, 156, 353
Alw21I GWGCWC 2 cut(s) 84, 555
Alw26I GTCTC 1 cut(s) 276
AoxI GGCC 2 cut(s) 162, 688
ApeKI GCWGC 3 cut(s) 350, 522, 662
ApoI RAATTY 1 cut(s) 192
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AseI ATTAAT 1 cut(s) 69
AspLEI GCGC 4 cut(s) 19, 55, 264, 539
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 2 cut(s) 75, 557
BalI TGGCCA 1 cut(s) 690
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 84, 555
BbvI GCAGC 3 cut(s) 362, 509, 649
BccI CCATC 3 cut(s) 2, 101, 676
BceAI ACGGC 2 cut(s) 305, 481
BciT130I CCWGG 1 cut(s) 653
BcnI CCSGG 2 cut(s) 75, 557
BcoDI GTCTC 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 56
BisI GCNGC 3 cut(s) 351, 523, 663
BlsI GCNGC 3 cut(s) 352, 524, 664
Bme1390I CCNGG 3 cut(s) 75, 557, 653
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 3 cut(s) 75, 557, 653
BmsI GCATC 2 cut(s) 582, 696
BoxI GACNNNNGTC 1 cut(s) 605
BpuMI CCSGG 2 cut(s) 75, 557
BsaHI GRCGYC 1 cut(s) 571
BsaJI CCNNGG 4 cut(s) 179, 293, 370, 383
BsaWI WCCGGW 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 4 cut(s) 179, 293, 370, 383
BseGI GGATG 3 cut(s) 13, 435, 668
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 536
BseXI GCAGC 3 cut(s) 362, 509, 649
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 164, 690
BsiHKAI GWGCWC 2 cut(s) 84, 555
BsiSI CCGG 5 cut(s) 56, 75, 189, 457, 556
BslFI GGGAC 3 cut(s) 25, 275, 582
BsmAI GTCTC 1 cut(s) 276
BsmBI CGTCTC 1 cut(s) 276
BsmFI GGGAC 3 cut(s) 25, 275, 582
BsnI GGCC 2 cut(s) 164, 690
Bsp1286I GDGCHC 2 cut(s) 84, 555
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 3 cut(s) 5, 25, 59
BspANI GGCC 2 cut(s) 164, 690
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 4 cut(s) 179, 293, 370, 383
BssNI GRCGYC 1 cut(s) 571
BssT1I CCWWGG 4 cut(s) 179, 293, 370, 383
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 1 cut(s) 604
BstACI GRCGYC 1 cut(s) 571
BstAPI GCANNNNNTGC 1 cut(s) 466
BstC8I GCNNGC 4 cut(s) 57, 80, 527, 711
BstDEI CTNAG 2 cut(s) 105, 278
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 3 cut(s) 13, 435, 668
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 4 cut(s) 19, 55, 264, 539
BstMAI GTCTC 1 cut(s) 276
BstMWI GCNNNNNNNGC 6 cut(s) 88, 350, 359, 466, 543, 687
BstNI CCWGG 1 cut(s) 653
BstPAI GACNNNNGTC 1 cut(s) 605
BstSCI CCNGG 3 cut(s) 73, 555, 651
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 362, 509, 649
BsuRI GGCC 2 cut(s) 164, 690
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 3 cut(s) 13, 435, 668
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 2 cut(s) 517, 529
Cac8I GCNNGC 4 cut(s) 57, 80, 527, 711
CfoI GCGC 4 cut(s) 19, 55, 264, 539
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 579
CviAII CATG 4 cut(s) 246, 317, 371, 507
DdeI CTNAG 2 cut(s) 105, 278
EaeI YGGCCR 1 cut(s) 688
EciI GGCGGA 2 cut(s) 20, 74
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 4 cut(s) 179, 293, 370, 383
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 4 cut(s) 179, 293, 370, 383
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 4 cut(s) 179, 293, 370, 383
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 4 cut(s) 249, 320, 374, 510
FaiI YATR 9 cut(s) 30, 247, 318, 341, 372, 442, 444, 508, 701
FaqI GGGAC 3 cut(s) 25, 275, 582
FatI CATG 4 cut(s) 245, 316, 370, 506
Fnu4HI GCNGC 3 cut(s) 351, 523, 663
FokI GGATG 3 cut(s) 20, 442, 655
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 3 cut(s) 351, 523, 663
FspI TGCGCA 1 cut(s) 18
GlaI GCGC 4 cut(s) 18, 54, 263, 538
GluI GCNGC 3 cut(s) 351, 523, 663
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 2 cut(s) 164, 690
HapII CCGG 5 cut(s) 56, 75, 189, 457, 556
HgaI GACGC 1 cut(s) 579
HhaI GCGC 4 cut(s) 19, 55, 264, 539
Hin1I GRCGYC 1 cut(s) 571
Hin1II CATG 4 cut(s) 249, 320, 374, 510
Hin6I GCGC 4 cut(s) 17, 53, 262, 537
HinP1I GCGC 4 cut(s) 17, 53, 262, 537
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 1 cut(s) 656
HpaII CCGG 5 cut(s) 56, 75, 189, 457, 556
Hpy166II GTNNAC 3 cut(s) 118, 137, 610
Hpy188I TCNGA 1 cut(s) 580
Hpy8I GTNNAC 3 cut(s) 118, 137, 610
HpyAV CCTTC 2 cut(s) 326, 559
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4V TGCA 7 cut(s) 170, 309, 362, 469, 529, 665, 709
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 350, 359, 466, 543, 687
HpyF3I CTNAG 2 cut(s) 105, 278
Hsp92I GRCGYC 1 cut(s) 571
Hsp92II CATG 4 cut(s) 249, 320, 374, 510
HspAI GCGC 4 cut(s) 17, 53, 262, 537
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Lsp1109I GCAGC 3 cut(s) 362, 509, 649
LweI GCATC 2 cut(s) 582, 696
MaeIII GTNAC 2 cut(s) 125, 500
MboII GAAGA 3 cut(s) 221, 358, 484
MhlI GDGCHC 2 cut(s) 84, 555
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 1 cut(s) 192
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 1 cut(s) 650
MnlI CCTC 5 cut(s) 55, 114, 400, 584, 682
Mox20I TGGCCA 1 cut(s) 690
MreI CGCCGGCG 1 cut(s) 55
MroNI GCCGGC 1 cut(s) 55
MscI TGGCCA 1 cut(s) 690
MseI TTAA 2 cut(s) 69, 356
MslI CAYNNNNRTG 1 cut(s) 698
Msp20I TGGCCA 1 cut(s) 690
MspI CCGG 5 cut(s) 56, 75, 189, 457, 556
MspR9I CCNGG 3 cut(s) 75, 557, 653
MvaI CCWGG 1 cut(s) 653
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 6 cut(s) 88, 350, 359, 466, 543, 687
NaeI GCCGGC 1 cut(s) 57
NciI CCSGG 2 cut(s) 75, 557
NcoI CCATGG 1 cut(s) 370
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 4 cut(s) 249, 320, 374, 510
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 500
NsbI TGCGCA 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 3 cut(s) 352, 524, 664
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
PshAI GACNNNNGTC 1 cut(s) 605
PshBI ATTAAT 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 172
PsyI GACNNNGTC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 698
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 69, 356
SatI GCNGC 3 cut(s) 351, 523, 663
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 3 cut(s) 75, 557, 653
SduI GDGCHC 2 cut(s) 84, 555
SetI ASST 8 cut(s) 39, 84, 125, 158, 307, 337, 355, 451
SfaNI GCATC 2 cut(s) 582, 696
SfcI CTRYAG 1 cut(s) 168
SgrAI CRCCGGYG 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 698
Sse9I AATT 1 cut(s) 192
SsiI CCGC 3 cut(s) 5, 25, 59
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 3 cut(s) 73, 555, 651
StyI CCWWGG 4 cut(s) 179, 293, 370, 383
TaaI ACNGT 1 cut(s) 604
TaqI TCGA 1 cut(s) 96
TasI AATT 1 cut(s) 192
Tru1I TTAA 2 cut(s) 69, 356
Tru9I TTAA 2 cut(s) 69, 356
TscAI CASTG 2 cut(s) 524, 536
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 3 cut(s) 350, 522, 662
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 3 cut(s) 381, 578, 647
TspRI CASTG 2 cut(s) 524, 536
Tth111I GACNNNGTC 1 cut(s) 287
VspI ATTAAT 1 cut(s) 69
XapI RAATTY 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.