Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003755

Physical Location & Seq

Genomic Coordinates Forward (+)

925157 .. 925809

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCACGCGGATCCTCGTCTCTCCCCCGCCCCCGAGCTCTACCTCAAAAACCACAGGAGGTCGAGGAAATCATCATCCAACGTCGTTCGGGGGCTCACATTAACGACAACAATAACAACAACAACAACAACAACAACAAAATCATACAAAAACCCAAAAACCGCAAACATAATGTCATGCCTCAGATCAAACACATGGACAATATCCGTCCTTTTTCTTTCCATTTTCCTCTTCGTTCCTTTAATTTCCGGTACTCCTGACCTTTTCGACATCATACGAGCAACAGGGTTTCATGGGATGGTGGGATGGGACACAGCAGCAAGGAGGTTTCTTGAAGAAAAAGGTGGAGAAAACAGGACTGTCATGTTATTGGCTGAGCAGAGGACGCGGCGGAGAGATCCTCTCGACAAGTTTAAAAAATACAGTGGTGGCTGGGATCTAAAAAATAAGCATTATTGGGCTGTGAGTTCTTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.15

Weight (kDa)

10.28

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12400
fragaria_vesca	FvH4_1g01880
malus_domestica	MD02G1016700.v1.1 MD15G1161200.v1.1
prunus_persica	Prupe.7G256400_v2.0.a1
pyrus_communis	pycom02g01500 pycom02g01540 pycom15g14490
rosa_chinensis	RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861
rosa_laevigata	RLG00000015810
rosa_multiflora	Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154080 Rroxscaffold_4G00314220
rosa_rugosa	Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300
rosa_samantha	Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500
rosa_wichuraiana	Rw1G012710 Rw2G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	8, 388
AciI	CCGC	5 cut(s)	8, 27, 162, 388, 391
AclWI	GGATC	4 cut(s)	5, 18, 392, 444
AfaI	GTAC	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	335
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	4 cut(s)	5, 18, 392, 444
Ama87I	CYCGRG	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	317
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AvaI	CYCGRG	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	10
BanII	GRGCYC	2 cut(s)	39, 96
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	2 cut(s)	292, 300
BcoDI	GTCTC	1 cut(s)	23
BisI	GCNGC	2 cut(s)	318, 389
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	2 cut(s)	319, 390
BmeT110I	CYCGRG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	12
BplI	GAGNNNNNCTC	4 cut(s)	385, 417, 387, 419
Bpu1102I	GCTNAGC	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	248
BseGI	GGATG	3 cut(s)	74, 303, 311
BseMII	CTCAG	2 cut(s)	196, 366
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	432
Bsh1236I	CGCG	2 cut(s)	8, 388
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	23
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	39, 96
Bsp143I	GATC	4 cut(s)	10, 185, 397, 436
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	5 cut(s)	8, 27, 162, 388, 391
BspCNI	CTCAG	2 cut(s)	195, 367
BspFNI	CGCG	2 cut(s)	8, 388
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	4 cut(s)	5, 18, 392, 444
BssMI	GATC	4 cut(s)	10, 185, 397, 436
Bst4CI	ACNGT	2 cut(s)	361, 425
Bst6I	CTCTTC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	182, 375
BstF5I	GGATG	3 cut(s)	74, 303, 311
BstFNI	CGCG	2 cut(s)	8, 388
BstKTI	GATC	4 cut(s)	13, 188, 400, 439
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	4 cut(s)	10, 185, 397, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstUI	CGCG	2 cut(s)	8, 388
BstV1I	GCAGC	1 cut(s)	329
BstX2I	RGATCY	3 cut(s)	10, 397, 436
BstYI	RGATCY	3 cut(s)	10, 397, 436
BtsCI	GGATG	3 cut(s)	74, 303, 311
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	4 cut(s)	177, 195, 293, 364
CviJI	RGCY	5 cut(s)	37, 94, 374, 432, 461
CviKI_1	RGCY	5 cut(s)	37, 94, 374, 432, 461
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	2 cut(s)	182, 375
DpnI	GATC	4 cut(s)	12, 187, 399, 438
DpnII	GATC	4 cut(s)	10, 185, 397, 436
DraI	TTTAAA	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	406
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	39, 96
Eco53kI	GAGCTC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	37
EcoT38I	GRGCYC	2 cut(s)	39, 96
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	4 cut(s)	180, 198, 296, 367
FaiI	YATR	7 cut(s)	145, 170, 178, 196, 275, 294, 365
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	4 cut(s)	176, 194, 292, 363
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	318, 389
FokI	GGATG	3 cut(s)	61, 310, 318
FriOI	GRGCYC	2 cut(s)	39, 96
Fsp4HI	GCNGC	2 cut(s)	318, 389
GluI	GCNGC	2 cut(s)	318, 389
GsaI	CCCAGC	1 cut(s)	436
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	4 cut(s)	180, 198, 296, 367
HpaII	CCGG	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	3 cut(s)	257, 332, 404
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	361, 425
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	2 cut(s)	182, 375
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	180, 198, 296, 367
Kzo9I	GATC	4 cut(s)	10, 185, 397, 436
LpnPI	CCDG	6 cut(s)	40, 262, 270, 270, 340, 418
Lsp1109I	GCAGC	1 cut(s)	329
MaeII	ACGT	1 cut(s)	81
MalI	GATC	4 cut(s)	12, 187, 399, 438
MboI	GATC	4 cut(s)	10, 185, 397, 436
MboII	GAAGA	2 cut(s)	223, 347
MflI	RGATCY	3 cut(s)	10, 397, 436
MhlI	GDGCHC	2 cut(s)	39, 96
MluCI	AATT	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	9 cut(s)	24, 51, 53, 57, 191, 239, 318, 375, 411
MseI	TTAA	3 cut(s)	101, 242, 414
MspI	CCGG	1 cut(s)	249
MvnI	CGCG	2 cut(s)	8, 388
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeII	GATC	4 cut(s)	10, 185, 397, 436
NlaIII	CATG	4 cut(s)	180, 198, 296, 367
NlaIV	GGNNCC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	319, 390
Psp124BI	GAGCTC	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	3 cut(s)	10, 397, 436
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	101, 242, 414
SatI	GCNGC	2 cut(s)	318, 389
Sau3AI	GATC	4 cut(s)	10, 185, 397, 436
SduI	GDGCHC	2 cut(s)	39, 96
SetI	ASST	7 cut(s)	39, 45, 62, 84, 264, 329, 346
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	5 cut(s)	8, 27, 162, 388, 391
SstI	GAGCTC	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	361, 425
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	62, 267, 405
TasI	AATT	1 cut(s)	243
TauI	GCSGC	1 cut(s)	391
Tru1I	TTAA	3 cut(s)	101, 242, 414
Tru9I	TTAA	3 cut(s)	101, 242, 414
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.