Rw1G012710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003755
Physical Location & Seq
Forward (+)
28185703 .. 28189039
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012710.1

Sequence Viewer

Length: 1005 bp
ATGAGCCAACGAGCATTTATGAGGATAATGCTGCTTAGAGATGTGATGACAATGGATACAAGAAGGTCTCTTGCGGATGAGAATCTGCAGAACTCGTCTCTGATTCTGGCGAAGGAGAGGACTCGCAGGAAGGACCCTCTTGATGATTTTCATAAGTACACTGGTGGATGGAATATCAGCAATGATCATTACTGGGCTTCTGTTGCTTGGACTGCGGTTCCCTTCTTTCTCATTGCTGGTCTGTGGTTCGTGATCTTTGGGCTAAGCTTGACACTTATTTGTTTCTGTTACTGCTGTTGCCCAAGAGAGCCTTATGGTTATTCGAGAACAGCCTGTGCTCTCTCTCTCATCTTCCTTATCTTCTTCACTGTCGCGGCAATTGTTGGATGCATTGTTCTGTACACTGGTCAGGCAAAGTTTCACAGCAGTACAACAAAGACACTCGATTATGTCGTGAGTCAGGTGGATACAACTGTTGAAAGCCTCCGGAATTTGTCAGGTTATCTTGGTGCAGCTAAGCGGACTGGAGTTGACTCCGTCTTTCTGCCATCAGATGTTCAGAGTAACATTGACACGACTATAACGAAACTCAACTCTGCTGCCTCTAAACTTTCTAATACAACTGAAAAGAATTCAAATCCCTTGAACTTTGACCACATCGCATTGGATAAAATTTATTACCTGTTCTTTGCAACCCATACAACACCGATCTCACTGATCGCAAGTGTGTGGAAGAGTTATGTGTGTAAGGTTAACACGGCAGGCATCTGTATAACTCCTGGACGTTATGGTCTGTATACTTATGGTCCATTCTTGGTTGATCTGCAAGACTGCACATTTGTCAGGGACACATTCACCGACATAAGTAATAGGAATTCAGTCATGTTATCGTTGATCTTTTGGGTAATCTACGCAAGGGAACGAAGGCACCGCGTGTACACCAAGCAGTTTATGGCTGGAGGTGGAGGAACAGGGGGATTCCAAGTCCAAGACAAGGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

37.55

Weight (kDa)

8.93

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 789
AccB1I GGYRCC 1 cut(s) 927
AccI GTMKAC 1 cut(s) 797
AccII CGCG 2 cut(s) 374, 933
AccIII TCCGGA 1 cut(s) 486
AciI CCGC 5 cut(s) 74, 215, 374, 520, 931
AcsI RAATTY 4 cut(s) 490, 631, 672, 874
AdeI CACNNNGTG 1 cut(s) 934
AfaI GTAC 4 cut(s) 158, 401, 430, 938
AfiI CCNNNNNNNGG 1 cut(s) 994
AgsI TTSAA 3 cut(s) 479, 636, 646
AjnI CCWGG 1 cut(s) 778
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
AluBI AGCT 2 cut(s) 267, 515
AluI AGCT 2 cut(s) 267, 515
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 2 cut(s) 72, 102
Aor13HI TCCGGA 1 cut(s) 486
ApeKI GCWGC 3 cut(s) 31, 512, 599
ApoI RAATTY 4 cut(s) 490, 631, 672, 874
ArsI GACNNNNNNTTYG 2 cut(s) 821, 853
AspS9I GGNCC 2 cut(s) 133, 806
AsuHPI GGTGA 1 cut(s) 847
AvaII GGWCC 2 cut(s) 133, 806
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BanI GGYRCC 1 cut(s) 927
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 3 cut(s) 18, 524, 586
BccI CCATC 2 cut(s) 162, 556
BceAI ACGGC 1 cut(s) 774
BciT130I CCWGG 1 cut(s) 780
BciVI GTATCC 2 cut(s) 49, 460
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 72, 102
BfmI CTRYAG 1 cut(s) 86
BfuI GTATCC 2 cut(s) 49, 460
BisI GCNGC 4 cut(s) 32, 375, 513, 600
BlpI GCTNAGC 2 cut(s) 263, 516
BlsI GCNGC 4 cut(s) 33, 376, 514, 601
Bme1390I CCNGG 1 cut(s) 780
Bme18I GGWCC 2 cut(s) 133, 806
BmgT120I GGNCC 2 cut(s) 133, 806
BmiI GGNNCC 3 cut(s) 135, 219, 929
BmrFI CCNGG 1 cut(s) 780
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 2 cut(s) 377, 774
BmuI ACTGGG 1 cut(s) 202
BpmI CTGGAG 2 cut(s) 546, 978
Bpu1102I GCTNAGC 2 cut(s) 263, 516
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 486
Bsc4I CCNNNNNNNGG 1 cut(s) 994
Bse1I ACTGG 4 cut(s) 166, 197, 409, 529
Bse3DI GCAATG 2 cut(s) 187, 231
Bse8I GATNNNNATC 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 486
BseBI CCWGG 1 cut(s) 780
BseGI GGATG 3 cut(s) 82, 173, 392
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 994
BseMI GCAATG 2 cut(s) 187, 231
BseNI ACTGG 4 cut(s) 166, 197, 409, 529
BseXI GCAGC 3 cut(s) 18, 524, 586
BsgI GTGCAG 2 cut(s) 531, 817
Bsh1236I CGCG 2 cut(s) 374, 933
BshNI GGYRCC 1 cut(s) 927
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 1 cut(s) 487
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 1 cut(s) 994
BsmAI GTCTC 2 cut(s) 72, 102
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 860
Bso31I GGTCTC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 486
Bsp1407I TGTACA 2 cut(s) 399, 936
Bsp143I GATC 6 cut(s) 184, 252, 708, 717, 820, 894
Bsp1720I GCTNAGC 2 cut(s) 263, 516
BspACI CCGC 5 cut(s) 74, 215, 374, 520, 931
BspEI TCCGGA 1 cut(s) 486
BspFNI CGCG 2 cut(s) 374, 933
BspLI GGNNCC 3 cut(s) 135, 219, 929
BspMAI CTGCAG 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 927
BspTNI GGTCTC 1 cut(s) 72
BsrDI GCAATG 2 cut(s) 187, 231
BsrGI TGTACA 2 cut(s) 399, 936
BsrI ACTGG 4 cut(s) 166, 197, 409, 529
BssMI GATC 6 cut(s) 184, 252, 708, 717, 820, 894
BssNAI GTATAC 1 cut(s) 798
Bst1107I GTATAC 1 cut(s) 798
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 2 cut(s) 370, 475
Bst6I CTCTTC 1 cut(s) 728
BstAUI TGTACA 2 cut(s) 399, 936
BstC8I GCNNGC 1 cut(s) 763
BstDEI CTNAG 4 cut(s) 35, 263, 516, 1002
BstF5I GGATG 3 cut(s) 82, 173, 392
BstFNI CGCG 2 cut(s) 374, 933
BstKTI GATC 6 cut(s) 187, 255, 711, 720, 823, 897
BstMAI GTCTC 2 cut(s) 72, 102
BstMBI GATC 6 cut(s) 184, 252, 708, 717, 820, 894
BstMWI GCNNNNNNNGC 2 cut(s) 203, 212
BstNI CCWGG 1 cut(s) 780
BstSCI CCNGG 1 cut(s) 778
BstSFI CTRYAG 1 cut(s) 86
BstUI CGCG 2 cut(s) 374, 933
BstV1I GCAGC 3 cut(s) 18, 524, 586
BstZ17I GTATAC 1 cut(s) 798
BsuI GTATCC 2 cut(s) 49, 460
BtgZI GCGATG 1 cut(s) 643
BtsCI GGATG 3 cut(s) 82, 173, 392
BtsIMutI CAGTG 4 cut(s) 159, 366, 402, 713
Cac8I GCNNGC 1 cut(s) 763
Cfr13I GGNCC 2 cut(s) 133, 806
Csp6I GTAC 4 cut(s) 157, 400, 429, 937
CviAII CATG 1 cut(s) 883
CviJI RGCY 9 cut(s) 6, 197, 262, 267, 310, 332, 483, 515, 956
CviKI_1 RGCY 9 cut(s) 6, 197, 262, 267, 310, 332, 483, 515, 956
CviQI GTAC 4 cut(s) 157, 400, 429, 937
DdeI CTNAG 4 cut(s) 35, 263, 516, 1002
DpnI GATC 6 cut(s) 186, 254, 710, 719, 822, 896
DpnII GATC 6 cut(s) 184, 252, 708, 717, 820, 894
DraIII CACNNNGTG 1 cut(s) 934
DrdI GACNNNNNNGTC 1 cut(s) 789
DseDI GACNNNNNNGTC 1 cut(s) 789
Eam1104I CTCTTC 1 cut(s) 728
EarI CTCTTC 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 133, 806
EcoO109I RGGNCCY 1 cut(s) 133
EcoRI GAATTC 2 cut(s) 631, 874
EcoRII CCWGG 1 cut(s) 778
EcoT22I ATGCAT 1 cut(s) 392
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 1 cut(s) 886
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 1 cut(s) 860
FatI CATG 1 cut(s) 882
FbaI TGATCA 1 cut(s) 184
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 4 cut(s) 32, 375, 513, 600
FokI GGATG 3 cut(s) 89, 180, 399
Fsp4HI GCNGC 4 cut(s) 32, 375, 513, 600
GluI GCNGC 4 cut(s) 32, 375, 513, 600
GsuI CTGGAG 2 cut(s) 546, 978
HapII CCGG 1 cut(s) 487
Hin1II CATG 1 cut(s) 886
HincII GTYRAC 2 cut(s) 532, 754
HindII GTYRAC 2 cut(s) 532, 754
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 6 cut(s) 82, 103, 121, 457, 533, 978
HpaI GTTAAC 1 cut(s) 754
HpaII CCGG 1 cut(s) 487
HphI GGTGA 1 cut(s) 847
Hpy166II GTNNAC 7 cut(s) 159, 402, 532, 754, 798, 937, 939
Hpy188I TCNGA 3 cut(s) 102, 553, 561
Hpy188III TCNNGA 5 cut(s) 140, 250, 324, 454, 487
Hpy8I GTNNAC 7 cut(s) 159, 402, 532, 754, 798, 937, 939
HpyAV CCTTC 5 cut(s) 57, 106, 124, 232, 918
HpyCH4III ACNGT 2 cut(s) 370, 475
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 6 cut(s) 88, 390, 512, 692, 826, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 212
HpyF3I CTNAG 4 cut(s) 35, 263, 516, 1002
HpySE526I ACGT 1 cut(s) 784
Hsp92II CATG 1 cut(s) 886
Kpn2I TCCGGA 1 cut(s) 486
Ksp22I TGATCA 1 cut(s) 184
KspAI GTTAAC 1 cut(s) 754
Kzo9I GATC 6 cut(s) 184, 252, 708, 717, 820, 894
Lsp1109I GCAGC 3 cut(s) 18, 524, 586
LweI GCATC 2 cut(s) 377, 774
MaeII ACGT 1 cut(s) 784
MaeIII GTNAC 2 cut(s) 287, 563
MalI GATC 6 cut(s) 186, 254, 710, 719, 822, 896
MboI GATC 6 cut(s) 184, 252, 708, 717, 820, 894
MboII GAAGA 4 cut(s) 343, 352, 355, 745
MfeI CAATTG 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 5 cut(s) 378, 490, 631, 672, 874
MlyI GAGTC 3 cut(s) 115, 466, 527
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 7 cut(s) 15, 111, 147, 494, 613, 953, 959
Mph1103I ATGCAT 1 cut(s) 392
MroI TCCGGA 1 cut(s) 486
MseI TTAA 1 cut(s) 753
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 1 cut(s) 780
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 780
MvnI CGCG 2 cut(s) 374, 933
MwoI GCNNNNNNNGC 2 cut(s) 203, 212
NdeII GATC 6 cut(s) 184, 252, 708, 717, 820, 894
NlaIII CATG 1 cut(s) 886
NlaIV GGNNCC 3 cut(s) 135, 219, 929
NsiI ATGCAT 1 cut(s) 392
PcsI WCGNNNNNNNCGW 2 cut(s) 450, 581
PfeI GAWTC 3 cut(s) 82, 103, 978
PflFI GACNNNGTC 1 cut(s) 536
PfoI TCCNGGA 1 cut(s) 778
PkrI GCNGC 4 cut(s) 33, 376, 514, 601
PleI GAGTC 3 cut(s) 115, 465, 527
PpsI GAGTC 3 cut(s) 115, 465, 527
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 3 cut(s) 135, 219, 929
PspPI GGNCC 2 cut(s) 133, 806
PspPPI RGGWCCY 1 cut(s) 133
PstI CTGCAG 1 cut(s) 90
PsyI GACNNNGTC 1 cut(s) 536
RsaI GTAC 4 cut(s) 158, 401, 430, 938
RsaNI GTAC 4 cut(s) 157, 400, 429, 937
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 4 cut(s) 32, 375, 513, 600
Sau3AI GATC 6 cut(s) 184, 252, 708, 717, 820, 894
Sau96I GGNCC 2 cut(s) 133, 806
SchI GAGTC 3 cut(s) 115, 466, 527
ScrFI CCNGG 1 cut(s) 780
SduI GDGCHC 1 cut(s) 340
SetI ASST 9 cut(s) 68, 269, 465, 502, 517, 684, 753, 787, 964
SfaNI GCATC 2 cut(s) 377, 774
SfcI CTRYAG 1 cut(s) 86
SinI GGWCC 2 cut(s) 133, 806
Sse9I AATT 5 cut(s) 378, 490, 631, 672, 874
SsiI CCGC 5 cut(s) 74, 215, 374, 520, 931
StyD4I CCNGG 1 cut(s) 778
TaaI ACNGT 2 cut(s) 370, 475
TaiI ACGT 1 cut(s) 787
TaqI TCGA 2 cut(s) 323, 444
TasI AATT 5 cut(s) 378, 490, 631, 672, 874
TatI WGTACW 4 cut(s) 156, 399, 428, 936
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 3 cut(s) 82, 103, 978
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 4 cut(s) 166, 373, 409, 720
TseI GCWGC 3 cut(s) 31, 512, 599
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 4 cut(s) 166, 373, 409, 720
Tth111I GACNNNGTC 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 133, 806
XapI RAATTY 4 cut(s) 490, 631, 672, 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 949
XmiI GTMKAC 1 cut(s) 797
Zsp2I ATGCAT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.