Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009188.1

Orthogroup ID

OG0003755

Physical Location & Seq

Genomic Coordinates Reverse (-)

26548 .. 29702

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009188.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atgtttgtgatttctgttgcttggactgcggttcccttctttctcattgctggtctgtggttcgtgatctttgggctaagcttgacccttatttgtttctgttactgctgttgcccaagagagccttatggttattcgagaacagcctatgctctctctctcatcctccttattttcttcactgttgcggcaattgttggatgcattgttctgtacactggtcaggcaaagttccacagcagtacaacaaagacactcgactatgttgtgaatcaggcggatactactgttgaaagcctccggaatttgtcaggttatcttggtgccgctaagcggattggagttgactccgtctttctgccatcagatgttcagagtaagattgacacgactataacgaaactcaactctgctgccactaaactttctgatacaactgaaaagaattcagatcgtatagacgatggattggatagcgtaagactggctctcattgtccttgctgctgttatgctctgtttggcctttcttggatttttattctccattctggggatgcaggcttttgtatacttcttggtgattattgggtggattcttgttgcgggcacattcattttgtgtggtgtatttcttctcctccataatgtggttgcagatgcatgtgtttccatggatgaatgggtccagcaccccaccgcccatactgctttagatgatctactcccttgtgtggacaatgctactgctcaagagacctcatcacgcagcaaggatacaacctacaaccttgtgagcatggtagacaaggtcatcaacaatttctcaaatcttaacaatccactaccccaacttggaccgttatatttcaatcagtctggccctctattacctgttctttgcaacccatacaacaccgatctctctgatcgaaagtgtgcccttggtgaggtggaactgcagaatgccacacaggtgtggaagagttatgtgtgtgaggttaacacggcaggcatctgtataacccctggacggttgactcccatcttctacgaccaaatggaagccgcagtaaatgtgagttatggtttgtatcgttatggtccattcttggttaatctgcaagactgcacatttgtcagggacacattcactgtcataagtaataggaattgtcctggccttcgaaaacatagcagctggatctacattgggctggtaatggtatctgcagctgtcatgttatcgttgatcttttgggtaatctacgcaagggaacgaaggcaccgcgtgtacaccaagcagtttatggctggaggtggaggaacagggggattccaagtccaagacaagggtgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

453

Amino Acids

49.92

Weight (kDa)

6.3

Isoelectric Point (pI)

25.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12400
fragaria_vesca	FvH4_1g01880
malus_domestica	MD02G1016700.v1.1 MD15G1161200.v1.1
prunus_persica	Prupe.7G256400_v2.0.a1
pyrus_communis	pycom02g01500 pycom02g01540 pycom15g14490
rosa_chinensis	RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861
rosa_laevigata	RLG00000015810
rosa_multiflora	Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154080 Rroxscaffold_4G00314220
rosa_rugosa	Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300
rosa_samantha	Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500
rosa_wichuraiana	Rw1G012710 Rw2G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	323, 1284
AccB7I	CCANNNNNTGG	1 cut(s)	649
AccI	GTMKAC	2 cut(s)	570, 804
AccII	CGCG	1 cut(s)	1290
AccIII	TCCGGA	1 cut(s)	300
AciI	CCGC	9 cut(s)	29, 188, 278, 327, 334, 605, 699, 1068, 1288
AclWI	GGATC	1 cut(s)	1211
AcsI	RAATTY	2 cut(s)	304, 445
AdeI	CACNNNGTG	1 cut(s)	1291
AfaI	GTAC	3 cut(s)	215, 244, 1295
AfiI	CCNNNNNNNGG	8 cut(s)	333, 552, 649, 733, 854, 949, 1032, 1351
AgsI	TTSAA	2 cut(s)	293, 871
AjnI	CCWGG	2 cut(s)	1027, 1177
AleI	CACNNNNGTG	2 cut(s)	974, 976
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	3 cut(s)	81, 1200, 1235
AluI	AGCT	3 cut(s)	81, 1200, 1235
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	1 cut(s)	1211
Aor13HI	TCCGGA	1 cut(s)	300
AoxI	GGCC	3 cut(s)	522, 880, 1180
ApeKI	GCWGC	5 cut(s)	413, 503, 768, 1197, 1232
ApoI	RAATTY	2 cut(s)	304, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	1118, 1150
AspS9I	GGNCC	4 cut(s)	685, 857, 881, 1103
AsuHPI	GGTGA	2 cut(s)	592, 959
AsuII	TTCGAA	1 cut(s)	1186
AvaII	GGWCC	3 cut(s)	685, 857, 1103
BaeGI	GKGCMC	2 cut(s)	611, 943
BaeI	ACNNNNGTAYC	2 cut(s)	273, 306
BanI	GGYRCC	2 cut(s)	323, 1284
BbvI	GCAGC	5 cut(s)	400, 490, 780, 1209, 1244
BccI	CCATC	3 cut(s)	370, 458, 1052
BceAI	ACGGC	1 cut(s)	1023
BciT130I	CCWGG	2 cut(s)	1029, 1179
BciVI	GTATCC	2 cut(s)	274, 769
BcoDI	GTCTC	1 cut(s)	749
BfmI	CTRYAG	2 cut(s)	959, 1230
BfuI	GTATCC	2 cut(s)	274, 769
BisI	GCNGC	8 cut(s)	189, 327, 414, 504, 769, 1068, 1198, 1233
BlpI	GCTNAGC	2 cut(s)	77, 330
BlsI	GCNGC	8 cut(s)	190, 328, 415, 505, 770, 1069, 1199, 1234
Bme1390I	CCNGG	2 cut(s)	1029, 1179
Bme18I	GGWCC	3 cut(s)	685, 857, 1103
BmgT120I	GGNCC	4 cut(s)	685, 857, 881, 1103
BmiI	GGNNCC	4 cut(s)	33, 325, 686, 1286
BmrFI	CCNGG	2 cut(s)	1029, 1179
BmsI	GCATC	4 cut(s)	191, 546, 649, 1023
BpmI	CTGGAG	1 cut(s)	1335
Bpu1102I	GCTNAGC	2 cut(s)	77, 330
Bpu14I	TTCGAA	1 cut(s)	1186
BpuEI	CTTGAG	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	672, 943, 1027
BsaWI	WCCGGW	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	8 cut(s)	333, 552, 649, 733, 854, 949, 1032, 1351
Bse1I	ACTGG	2 cut(s)	223, 489
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	1029, 1179
BseDI	CCNNGG	3 cut(s)	672, 943, 1027
BseGI	GGATG	4 cut(s)	162, 206, 561, 682
BseLI	CCNNNNNNNGG	8 cut(s)	333, 552, 649, 733, 854, 949, 1032, 1351
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	223, 489
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	2 cut(s)	611, 943
BseXI	GCAGC	5 cut(s)	400, 490, 780, 1209, 1244
BsgI	GTGCAG	1 cut(s)	1114
Bsh1236I	CGCG	1 cut(s)	1290
BshFI	GGCC	3 cut(s)	524, 882, 1182
BshNI	GGYRCC	2 cut(s)	323, 1284
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	1157
BslI	CCNNNNNNNGG	8 cut(s)	333, 552, 649, 733, 854, 949, 1032, 1351
BsmAI	GTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	1157
BsmI	GAATGC	1 cut(s)	970
BsnI	GGCC	3 cut(s)	524, 882, 1182
Bso31I	GGTCTC	1 cut(s)	749
Bsp119I	TTCGAA	1 cut(s)	1186
Bsp1286I	GDGCHC	2 cut(s)	611, 943
Bsp13I	TCCGGA	1 cut(s)	300
Bsp1407I	TGTACA	2 cut(s)	213, 1293
Bsp143I	GATC	7 cut(s)	66, 451, 718, 919, 928, 1203, 1251
Bsp1720I	GCTNAGC	2 cut(s)	77, 330
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	9 cut(s)	29, 188, 278, 327, 334, 605, 699, 1068, 1288
BspANI	GGCC	3 cut(s)	524, 882, 1182
BspEI	TCCGGA	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	1290
BspLI	GGNNCC	4 cut(s)	33, 325, 686, 1286
BspMAI	CTGCAG	2 cut(s)	963, 1234
BspPI	GGATC	1 cut(s)	1211
BspT104I	TTCGAA	1 cut(s)	1186
BspT107I	GGYRCC	2 cut(s)	323, 1284
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	45
BsrGI	TGTACA	2 cut(s)	213, 1293
BsrI	ACTGG	2 cut(s)	223, 489
BssECI	CCNNGG	3 cut(s)	672, 943, 1027
BssMI	GATC	7 cut(s)	66, 451, 718, 919, 928, 1203, 1251
BssNAI	GTATAC	1 cut(s)	571
BssT1I	CCWWGG	2 cut(s)	672, 943
Bst1107I	GTATAC	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	1029, 1179
Bst4CI	ACNGT	5 cut(s)	184, 289, 861, 1035, 1156
Bst6I	CTCTTC	1 cut(s)	977
BstAUI	TGTACA	2 cut(s)	213, 1293
BstBI	TTCGAA	1 cut(s)	1186
BstC8I	GCNNGC	3 cut(s)	561, 607, 1012
BstDEI	CTNAG	3 cut(s)	77, 330, 1359
BstDSI	CCRYGG	1 cut(s)	672
BstENI	CCTNNNNNAGG	1 cut(s)	947
BstF5I	GGATG	4 cut(s)	162, 206, 561, 682
BstFNI	CGCG	1 cut(s)	1290
BstKTI	GATC	7 cut(s)	69, 454, 721, 922, 931, 1206, 1254
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	7 cut(s)	66, 451, 718, 919, 928, 1203, 1251
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 707
BstNI	CCWGG	2 cut(s)	1029, 1179
BstNSI	RCATGY	1 cut(s)	666
BstSCI	CCNGG	2 cut(s)	1027, 1177
BstSFI	CTRYAG	2 cut(s)	959, 1230
BstSLI	GKGCMC	2 cut(s)	611, 943
BstUI	CGCG	1 cut(s)	1290
BstV1I	GCAGC	5 cut(s)	400, 490, 780, 1209, 1244
BstX2I	RGATCY	1 cut(s)	1203
BstYI	RGATCY	1 cut(s)	1203
BstZ17I	GTATAC	1 cut(s)	571
BsuI	GTATCC	2 cut(s)	274, 769
BsuRI	GGCC	3 cut(s)	524, 882, 1182
BtgI	CCRYGG	1 cut(s)	672
BtsCI	GGATG	4 cut(s)	162, 206, 561, 682
BtsIMutI	CAGTG	3 cut(s)	180, 216, 1152
Cac8I	GCNNGC	3 cut(s)	561, 607, 1012
Cfr13I	GGNCC	4 cut(s)	685, 857, 881, 1103
Csp6I	GTAC	3 cut(s)	214, 243, 1294
CviAII	CATG	4 cut(s)	663, 673, 799, 1240
CviQI	GTAC	3 cut(s)	214, 243, 1294
DdeI	CTNAG	3 cut(s)	77, 330, 1359
DpnI	GATC	7 cut(s)	68, 453, 720, 921, 930, 1205, 1253
DpnII	GATC	7 cut(s)	66, 451, 718, 919, 928, 1203, 1251
DraIII	CACNNNGTG	1 cut(s)	1291
Eam1104I	CTCTTC	1 cut(s)	977
EarI	CTCTTC	1 cut(s)	977
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	2 cut(s)	672, 943
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	3 cut(s)	685, 857, 1103
EcoNI	CCTNNNNNAGG	1 cut(s)	947
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	1027, 1177
EcoT14I	CCWWGG	2 cut(s)	672, 943
EcoT22I	ATGCAT	2 cut(s)	206, 664
ErhI	CCWWGG	2 cut(s)	672, 943
FaeI	CATG	4 cut(s)	666, 676, 802, 1243
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	1 cut(s)	1157
FatI	CATG	4 cut(s)	662, 672, 798, 1239
FauI	CCCGC	1 cut(s)	598
FblI	GTMKAC	2 cut(s)	570, 804
Fnu4HI	GCNGC	8 cut(s)	189, 327, 414, 504, 769, 1068, 1198, 1233
FokI	GGATG	4 cut(s)	149, 213, 568, 689
Fsp4HI	GCNGC	8 cut(s)	189, 327, 414, 504, 769, 1068, 1198, 1233
GluI	GCNGC	8 cut(s)	189, 327, 414, 504, 769, 1068, 1198, 1233
GsuI	CTGGAG	1 cut(s)	1335
HaeIII	GGCC	3 cut(s)	524, 882, 1182
HapII	CCGG	1 cut(s)	301
Hin1II	CATG	4 cut(s)	666, 676, 802, 1243
HincII	GTYRAC	3 cut(s)	346, 1003, 1038
HindII	GTYRAC	3 cut(s)	346, 1003, 1038
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	5 cut(s)	271, 347, 595, 1039, 1335
HpaI	GTTAAC	1 cut(s)	1003
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	2 cut(s)	592, 959
Hpy166II	GTNNAC	9 cut(s)	216, 346, 571, 736, 805, 1003, 1038, 1294, 1296
Hpy188I	TCNGA	5 cut(s)	367, 375, 430, 451, 928
Hpy188III	TCNNGA	4 cut(s)	64, 138, 301, 752
Hpy8I	GTNNAC	9 cut(s)	216, 346, 571, 736, 805, 1003, 1038, 1294, 1296
HpyAV	CCTTC	3 cut(s)	46, 1193, 1275
HpyCH4III	ACNGT	5 cut(s)	184, 289, 861, 1035, 1156
HpyCH4V	TGCA	9 cut(s)	204, 559, 656, 662, 903, 961, 1123, 1131, 1232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 707
HpyF3I	CTNAG	3 cut(s)	77, 330, 1359
Hsp92II	CATG	4 cut(s)	666, 676, 802, 1243
Kpn2I	TCCGGA	1 cut(s)	300
KspAI	GTTAAC	1 cut(s)	1003
Kzo9I	GATC	7 cut(s)	66, 451, 718, 919, 928, 1203, 1251
Lsp1109I	GCAGC	5 cut(s)	400, 490, 780, 1209, 1244
LweI	GCATC	4 cut(s)	191, 546, 649, 1023
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	7 cut(s)	68, 453, 720, 921, 930, 1205, 1253
MboI	GATC	7 cut(s)	66, 451, 718, 919, 928, 1203, 1251
MboII	GAAGA	4 cut(s)	169, 626, 994, 1039
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	1203
MhlI	GDGCHC	2 cut(s)	611, 943
MluCI	AATT	5 cut(s)	192, 304, 445, 820, 1171
MlyI	GAGTC	2 cut(s)	341, 1033
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	9 cut(s)	176, 308, 650, 769, 894, 943, 991, 1310, 1316
Mph1103I	ATGCAT	2 cut(s)	206, 664
MroI	TCCGGA	1 cut(s)	300
MseI	TTAA	3 cut(s)	834, 1002, 1116
MslI	CAYNNNNRTG	2 cut(s)	974, 976
MspA1I	CMGCKG	2 cut(s)	1200, 1235
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	2 cut(s)	1029, 1179
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	970
MvaI	CCWGG	2 cut(s)	1029, 1179
MvnI	CGCG	1 cut(s)	1290
MwoI	GCNNNNNNNGC	2 cut(s)	26, 707
NcoI	CCATGG	1 cut(s)	672
NdeII	GATC	7 cut(s)	66, 451, 718, 919, 928, 1203, 1251
NlaIII	CATG	4 cut(s)	666, 676, 802, 1243
NlaIV	GGNNCC	4 cut(s)	33, 325, 686, 1286
NsiI	ATGCAT	2 cut(s)	206, 664
NspI	RCATGY	1 cut(s)	666
NspV	TTCGAA	1 cut(s)	1186
OliI	CACNNNNGTG	2 cut(s)	974, 976
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PctI	GAATGC	1 cut(s)	970
PfeI	GAWTC	3 cut(s)	271, 595, 1335
PflFI	GACNNNGTC	2 cut(s)	350, 809
PflMI	CCANNNNNTGG	1 cut(s)	649
PkrI	GCNGC	8 cut(s)	190, 328, 415, 505, 770, 1069, 1199, 1234
PleI	GAGTC	2 cut(s)	341, 1033
PpsI	GAGTC	2 cut(s)	341, 1033
Psp6I	CCWGG	2 cut(s)	1027, 1177
PspGI	CCWGG	2 cut(s)	1027, 1177
PspN4I	GGNNCC	4 cut(s)	33, 325, 686, 1286
PspPI	GGNCC	4 cut(s)	685, 857, 881, 1103
PstI	CTGCAG	2 cut(s)	963, 1234
PsuI	RGATCY	1 cut(s)	1203
PsyI	GACNNNGTC	2 cut(s)	350, 809
PvuII	CAGCTG	2 cut(s)	1200, 1235
RsaI	GTAC	3 cut(s)	215, 244, 1295
RsaNI	GTAC	3 cut(s)	214, 243, 1294
RseI	CAYNNNNRTG	2 cut(s)	974, 976
SaqAI	TTAA	3 cut(s)	834, 1002, 1116
SatI	GCNGC	8 cut(s)	189, 327, 414, 504, 769, 1068, 1198, 1233
Sau3AI	GATC	7 cut(s)	66, 451, 718, 919, 928, 1203, 1251
Sau96I	GGNCC	4 cut(s)	685, 857, 881, 1103
SchI	GAGTC	2 cut(s)	341, 1033
ScrFI	CCNGG	2 cut(s)	1029, 1179
SduI	GDGCHC	2 cut(s)	611, 943
SfaNI	GCATC	4 cut(s)	191, 546, 649, 1023
SfcI	CTRYAG	2 cut(s)	959, 1230
SfuI	TTCGAA	1 cut(s)	1186
SinI	GGWCC	3 cut(s)	685, 857, 1103
SmiMI	CAYNNNNRTG	2 cut(s)	974, 976
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	5 cut(s)	192, 304, 445, 820, 1171
SsiI	CCGC	9 cut(s)	29, 188, 278, 327, 334, 605, 699, 1068, 1288
StyD4I	CCNGG	2 cut(s)	1027, 1177
StyI	CCWWGG	2 cut(s)	672, 943
TaaI	ACNGT	5 cut(s)	184, 289, 861, 1035, 1156
TaqI	TCGA	4 cut(s)	137, 258, 931, 1186
TasI	AATT	5 cut(s)	192, 304, 445, 820, 1171
TatI	WGTACW	3 cut(s)	213, 242, 1293
TauI	GCSGC	3 cut(s)	191, 329, 1070
TfiI	GAWTC	3 cut(s)	271, 595, 1335
Tru1I	TTAA	3 cut(s)	834, 1002, 1116
Tru9I	TTAA	3 cut(s)	834, 1002, 1116
TscAI	CASTG	3 cut(s)	187, 223, 1159
TseI	GCWGC	5 cut(s)	413, 503, 768, 1197, 1232
TspDTI	ATGAA	2 cut(s)	604, 693
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	3 cut(s)	187, 223, 1159
Tth111I	GACNNNGTC	2 cut(s)	350, 809
Van91I	CCANNNNNTGG	1 cut(s)	649
VpaK11BI	GGWCC	3 cut(s)	685, 857, 1103
XagI	CCTNNNNNAGG	1 cut(s)	947
XapI	RAATTY	2 cut(s)	304, 445
XceI	RCATGY	1 cut(s)	666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1306
XmiI	GTMKAC	2 cut(s)	570, 804
Zsp2I	ATGCAT	2 cut(s)	206, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.