Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012638.1

Orthogroup ID

OG0003755

Physical Location & Seq

Genomic Coordinates Reverse (-)

18569 .. 23025

Gene Structure 4457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012638.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggatacaagaaggtctcttgcggatgagaatctgcagaactcgtctctgattctggcgaaggagaggactcgcaggaaggaccctcttgatgattttcataagtacactggtggatggaatatcagcaatgatcattactgggcttctgttgcttggactgcggttcccttctttctcattgctggtctgtggttcgtgatctttgggctaagcttgacacttatttgtttctgttactgctgttggccaagagagccttatggttattcgagaacagcctatgctctctctctcatcttccttatcttcttcactgtcgcggcaattgttggatgcattgttctgtacactggtcaggcaaagtttcacagcagtacaacaaagacactcgattatgtcgtgagtcaggcggatacaactgttgaaagcctccggaatttgtcaggttatcttggtgcagctaagcggactggagttgactccgtctttctgccatcagatgttcagagtaacattgacacgactataacgaaactcaactctgctgcctctaaactttctaatacaactgaaaagaattcaaatcgtatagatgatggattggatagcgtcagtcatgttatcgttgatcttttgggtaatctacgcaagggaatgaaggcaccgcgtgtacaccaagcagtttatggctggaggtggaggaacagggggattccaagtccaagacaagggtccgttgcgcttattgagaaacgagttctaaatttcttcactcaggttggggtctcttttgtgcgcgacgagtacagcgcgtggatcctcttcgagttggagggatggagttttactagtggagttgcctatgcttttgttgacaaaggcttgctctgtttggggagggttatgaattgggttgcttgcacggtttattaccatgattgcaagaatcgccaaggacaggtggaggttcttgccaaagaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.05

Weight (kDa)

8.7

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12400
fragaria_vesca	FvH4_1g01880
malus_domestica	MD02G1016700.v1.1 MD15G1161200.v1.1
prunus_persica	Prupe.7G256400_v2.0.a1
pyrus_communis	pycom02g01500 pycom02g01540 pycom15g14490
rosa_chinensis	RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861
rosa_laevigata	RLG00000015810
rosa_multiflora	Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154080 Rroxscaffold_4G00314220
rosa_rugosa	Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300
rosa_samantha	Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500
rosa_wichuraiana	Rw1G012710 Rw2G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	664
AccII	CGCG	4 cut(s)	323, 670, 801, 815
AccIII	TCCGGA	1 cut(s)	435
AciI	CCGC	6 cut(s)	23, 164, 323, 413, 469, 668
AclWI	GGATC	2 cut(s)	814, 827
AcoI	YGGCCR	1 cut(s)	248
AcsI	RAATTY	3 cut(s)	439, 580, 766
AdeI	CACNNNGTG	1 cut(s)	671
AfaI	GTAC	5 cut(s)	107, 350, 379, 675, 809
AfiI	CCNNNNNNNGG	2 cut(s)	731, 961
AgsI	TTSAA	2 cut(s)	428, 585
AhlI	ACTAGT	1 cut(s)	851
AloI	GAACNNNNNNTCC	2 cut(s)	327, 359
AluBI	AGCT	2 cut(s)	216, 464
AluI	AGCT	2 cut(s)	216, 464
Alw26I	GTCTC	3 cut(s)	21, 51, 793
AlwI	GGATC	2 cut(s)	814, 827
Aor13HI	TCCGGA	1 cut(s)	435
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	461, 548
ApoI	RAATTY	3 cut(s)	439, 580, 766
AspLEI	GCGC	3 cut(s)	745, 801, 815
AspS9I	GGNCC	2 cut(s)	82, 735
AvaII	GGWCC	2 cut(s)	82, 735
BaeI	ACNNNNGTAYC	2 cut(s)	408, 441
BalI	TGGCCA	1 cut(s)	250
BamHI	GGATCC	1 cut(s)	819
BanI	GGYRCC	1 cut(s)	664
BbvI	GCAGC	2 cut(s)	473, 535
BccI	CCATC	4 cut(s)	111, 505, 593, 834
BciVI	GTATCC	1 cut(s)	409
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	3 cut(s)	21, 51, 793
BcuI	ACTAGT	1 cut(s)	851
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	324, 462, 549
BlpI	GCTNAGC	2 cut(s)	212, 465
BlsI	GCNGC	3 cut(s)	325, 463, 550
Bme18I	GGWCC	2 cut(s)	82, 735
BmgT120I	GGNCC	2 cut(s)	82, 735
BmiI	GGNNCC	5 cut(s)	84, 168, 666, 736, 821
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	326
BmuI	ACTGGG	1 cut(s)	151
BoxI	GACNNNNGTC	1 cut(s)	733
BpmI	CTGGAG	2 cut(s)	495, 715
Bpu1102I	GCTNAGC	2 cut(s)	212, 465
BsaBI	GATNNNNATC	1 cut(s)	30
BsaI	GGTCTC	2 cut(s)	21, 793
BsaJI	CCNNGG	1 cut(s)	955
BsaWI	WCCGGW	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	2 cut(s)	731, 961
Bse1I	ACTGG	4 cut(s)	115, 146, 358, 478
Bse3DI	GCAATG	2 cut(s)	136, 180
Bse8I	GATNNNNATC	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	955
BseGI	GGATG	4 cut(s)	31, 122, 341, 845
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	731, 961
BseMI	GCAATG	2 cut(s)	136, 180
BseMII	CTCAG	1 cut(s)	791
BseNI	ACTGG	4 cut(s)	115, 146, 358, 478
BseXI	GCAGC	2 cut(s)	473, 535
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	4 cut(s)	323, 670, 801, 815
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	731, 961
BsmAI	GTCTC	3 cut(s)	21, 51, 793
BsmBI	CGTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	250
Bso31I	GGTCTC	2 cut(s)	21, 793
Bsp13I	TCCGGA	1 cut(s)	435
Bsp1407I	TGTACA	2 cut(s)	348, 673
Bsp143I	GATC	4 cut(s)	133, 201, 631, 819
Bsp1720I	GCTNAGC	2 cut(s)	212, 465
BspACI	CCGC	6 cut(s)	23, 164, 323, 413, 469, 668
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	790
BspEI	TCCGGA	1 cut(s)	435
BspFNI	CGCG	4 cut(s)	323, 670, 801, 815
BspLI	GGNNCC	5 cut(s)	84, 168, 666, 736, 821
BspMAI	CTGCAG	1 cut(s)	39
BspPI	GGATC	2 cut(s)	814, 827
BspT107I	GGYRCC	1 cut(s)	664
BspTNI	GGTCTC	2 cut(s)	21, 793
BsrDI	GCAATG	2 cut(s)	136, 180
BsrGI	TGTACA	2 cut(s)	348, 673
BsrI	ACTGG	4 cut(s)	115, 146, 358, 478
BssECI	CCNNGG	1 cut(s)	955
BssMI	GATC	4 cut(s)	133, 201, 631, 819
BssT1I	CCWWGG	1 cut(s)	955
Bst4CI	ACNGT	3 cut(s)	319, 424, 928
Bst6I	CTCTTC	1 cut(s)	830
BstAUI	TGTACA	2 cut(s)	348, 673
BstC8I	GCNNGC	2 cut(s)	887, 922
BstDEI	CTNAG	3 cut(s)	212, 465, 777
BstF5I	GGATG	4 cut(s)	31, 122, 341, 845
BstFNI	CGCG	4 cut(s)	323, 670, 801, 815
BstHHI	GCGC	3 cut(s)	745, 801, 815
BstKTI	GATC	4 cut(s)	136, 204, 634, 822
BstMAI	GTCTC	3 cut(s)	21, 51, 793
BstMBI	GATC	4 cut(s)	133, 201, 631, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 161, 256, 951
BstPAI	GACNNNNGTC	1 cut(s)	733
BstSFI	CTRYAG	1 cut(s)	35
BstUI	CGCG	4 cut(s)	323, 670, 801, 815
BstV1I	GCAGC	2 cut(s)	473, 535
BstX2I	RGATCY	1 cut(s)	819
BstYI	RGATCY	1 cut(s)	819
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	31, 122, 341, 845
BtsIMutI	CAGTG	3 cut(s)	108, 315, 351
Cac8I	GCNNGC	2 cut(s)	887, 922
CfoI	GCGC	3 cut(s)	745, 801, 815
Cfr13I	GGNCC	2 cut(s)	82, 735
CseI	GACGC	1 cut(s)	601
Csp6I	GTAC	5 cut(s)	106, 349, 378, 674, 808
CviAII	CATG	2 cut(s)	620, 938
CviQI	GTAC	5 cut(s)	106, 349, 378, 674, 808
DdeI	CTNAG	3 cut(s)	212, 465, 777
DpnI	GATC	4 cut(s)	135, 203, 633, 821
DpnII	GATC	4 cut(s)	133, 201, 631, 819
DraIII	CACNNNGTG	1 cut(s)	671
EaeI	YGGCCR	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	830
EarI	CTCTTC	1 cut(s)	830
EciI	GGCGGA	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	955
Eco31I	GGTCTC	2 cut(s)	21, 793
Eco47I	GGWCC	2 cut(s)	82, 735
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	955
EcoT22I	ATGCAT	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	955
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	623, 941
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FatI	CATG	2 cut(s)	619, 937
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	324, 462, 549
FokI	GGATG	4 cut(s)	38, 129, 348, 852
Fsp4HI	GCNGC	3 cut(s)	324, 462, 549
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	3 cut(s)	744, 800, 814
GluI	GCNGC	3 cut(s)	324, 462, 549
GsuI	CTGGAG	2 cut(s)	495, 715
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	436
HgaI	GACGC	1 cut(s)	601
HhaI	GCGC	3 cut(s)	745, 801, 815
Hin1II	CATG	2 cut(s)	623, 941
Hin6I	GCGC	3 cut(s)	743, 799, 813
HinP1I	GCGC	3 cut(s)	743, 799, 813
HincII	GTYRAC	2 cut(s)	481, 877
HindII	GTYRAC	2 cut(s)	481, 877
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	7 cut(s)	31, 52, 70, 406, 482, 715, 949
HpaII	CCGG	1 cut(s)	436
Hpy166II	GTNNAC	6 cut(s)	108, 351, 481, 674, 676, 877
Hpy188I	TCNGA	3 cut(s)	51, 502, 510
Hpy188III	TCNNGA	5 cut(s)	89, 199, 273, 403, 436
Hpy8I	GTNNAC	6 cut(s)	108, 351, 481, 674, 676, 877
Hpy99I	CGWCG	1 cut(s)	806
HpyAV	CCTTC	5 cut(s)	6, 55, 73, 181, 655
HpyCH4III	ACNGT	3 cut(s)	319, 424, 928
HpyCH4V	TGCA	5 cut(s)	37, 339, 461, 924, 945
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 161, 256, 951
HpyF3I	CTNAG	3 cut(s)	212, 465, 777
Hsp92II	CATG	2 cut(s)	623, 941
HspAI	GCGC	3 cut(s)	743, 799, 813
Kpn2I	TCCGGA	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	133, 201, 631, 819
Lsp1109I	GCAGC	2 cut(s)	473, 535
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	852
MaeIII	GTNAC	2 cut(s)	236, 512
MalI	GATC	4 cut(s)	135, 203, 633, 821
MboI	GATC	4 cut(s)	133, 201, 631, 819
MboII	GAAGA	5 cut(s)	292, 301, 304, 763, 817
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	819
MlsI	TGGCCA	1 cut(s)	250
MluCI	AATT	5 cut(s)	327, 439, 580, 766, 910
MluNI	TGGCCA	1 cut(s)	250
MlyI	GAGTC	3 cut(s)	64, 415, 476
MmeI	TCCRAC	2 cut(s)	313, 813
Mox20I	TGGCCA	1 cut(s)	250
Mph1103I	ATGCAT	1 cut(s)	341
MroI	TCCGGA	1 cut(s)	435
MscI	TGGCCA	1 cut(s)	250
Msp20I	TGGCCA	1 cut(s)	250
MspI	CCGG	1 cut(s)	436
MunI	CAATTG	1 cut(s)	327
MvnI	CGCG	4 cut(s)	323, 670, 801, 815
MwoI	GCNNNNNNNGC	4 cut(s)	152, 161, 256, 951
NdeII	GATC	4 cut(s)	133, 201, 631, 819
NlaIII	CATG	2 cut(s)	623, 941
NlaIV	GGNNCC	5 cut(s)	84, 168, 666, 736, 821
NsiI	ATGCAT	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	2 cut(s)	399, 530
PfeI	GAWTC	4 cut(s)	31, 52, 715, 949
PflFI	GACNNNGTC	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	325, 463, 550
PleI	GAGTC	3 cut(s)	64, 414, 476
PpsI	GAGTC	3 cut(s)	64, 414, 476
PpuMI	RGGWCCY	1 cut(s)	82
PshAI	GACNNNNGTC	1 cut(s)	733
Psp5II	RGGWCCY	1 cut(s)	82
PspN4I	GGNNCC	5 cut(s)	84, 168, 666, 736, 821
PspPI	GGNCC	2 cut(s)	82, 735
PspPPI	RGGWCCY	1 cut(s)	82
PstI	CTGCAG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	819
PsyI	GACNNNGTC	1 cut(s)	485
RsaI	GTAC	5 cut(s)	107, 350, 379, 675, 809
RsaNI	GTAC	5 cut(s)	106, 349, 378, 674, 808
SatI	GCNGC	3 cut(s)	324, 462, 549
Sau3AI	GATC	4 cut(s)	133, 201, 631, 819
Sau96I	GGNCC	2 cut(s)	82, 735
SchI	GAGTC	3 cut(s)	64, 415, 476
SetI	ASST	8 cut(s)	17, 218, 451, 466, 701, 783, 966, 972
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	35
SinI	GGWCC	2 cut(s)	82, 735
SpeI	ACTAGT	1 cut(s)	851
Sse9I	AATT	5 cut(s)	327, 439, 580, 766, 910
SsiI	CCGC	6 cut(s)	23, 164, 323, 413, 469, 668
SspMI	CTAG	1 cut(s)	852
StyI	CCWWGG	1 cut(s)	955
TaaI	ACNGT	3 cut(s)	319, 424, 928
TaqI	TCGA	3 cut(s)	272, 393, 828
TasI	AATT	5 cut(s)	327, 439, 580, 766, 910
TatI	WGTACW	5 cut(s)	105, 348, 377, 673, 807
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	4 cut(s)	31, 52, 715, 949
TscAI	CASTG	3 cut(s)	115, 322, 358
TseI	GCWGC	2 cut(s)	461, 548
TspDTI	ATGAA	3 cut(s)	89, 674, 923
TspGWI	ACGGA	2 cut(s)	475, 727
TspRI	CASTG	3 cut(s)	115, 322, 358
Tth111I	GACNNNGTC	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	82, 735
XapI	RAATTY	3 cut(s)	439, 580, 766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XspI	CTAG	1 cut(s)	852
Zsp2I	ATGCAT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.