Rw2G001810

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
1492791 .. 1499015
6225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001810.1

Sequence Viewer

Length: 1638 bp
ATGTCAATCTTTAACTCAAAAAAACTGCTTCTTTTCCTCTCCCTTCTCCTCTTCATCGCTCTCACCTCCGGAAACACTCACATTTCTCACACATTTCGAGGCAGAGGTGGTGATGTTGTTGAGGGAGGTGCGGTGATGACAATGGATACAAGAAGGTCTCTTGCGGATGAGAATCTGCAGAACTCGTCTCTGATTCTGGCGAAGGAGAGGACTCGCAGGAAGGACCCTCTTGATGATTTTCATAAGTACACTGGTGGATGGAATATCAGCAATGATCATTACTGGGCTTCTGTTGCTTGGACTGCGGTTCCCTTCTTTCTCATTGCTGGTCTGTGGTTCGTGATCTTTGGGCTAAGCTTGACCCTTATTTGTTTCTGTTACTGCTGTTGCCCAAGAGAGCCTTATGGTTATTCGAGAACAGCCTATGCTCTCTCTCTCATCCTCCTTATTTTCTTCACTGTTGCGGCAATTGTTGGATGCATTGTTCTGTACACTGGTCAGGCAAAGTTCCACAGCAGTACAACAAAGACACTCGACTATGTTGTGAATCAGGCGGATACTACTGTTGAAAGCCTCCGGAATTTGTCAGGTTATCTTGGTGCCGCTAAGCGGATTGGAGTTGACTCCGTCTTTCTGCCATCAGATATTCAGAGTAAGATTGACACGACTATAACGAAACTCAACTCTGCTGCCACTAAACTTTCTGATACAACTGAAAAGAATTCAGATCGTATAGACGACGGATTGGATAGCGTAAGACTGGCTCTCATTGTCCTTGCTGCTGTTATGCTCTGTTTGGCCTTTCTTGGATTTTTATTCTCCATTCTGGGGATGCAGGCTTGTGTATACTTCTTGGTGATTATTGGGTGGATTCTTGTTGCGGGCACATTCATTTTGTGTGGTGTATTTCTTCTCCTCCATAATGTGGTTGCAGATGCATGTGTTTCCATGGATGAATGGGTCCAGCACCCCACCGCCCATACTGCTTTAGATGATCTACTCCCTTGTGTGGACAATGCTACTGCTCAAGAGACCTCATCACGCAGCAAGGATACAACCTACAACCTTGTGAGGATGGTAGACAAGGTCATCAACAATTTCTCAAATCTTAACAATCCACTACCCCAACTTGGACCGTTATATTTCAATCAGTCTGGCCCTCTATTACCTGTTCTTTGCAACCCATACAACACCGATCTCTCTGATCGAAAGTGTGCCCTTGGTGAGGTGGAACTGCAGAATGCCACACAGGTGTGGAAGAGTTATGTGTGTGAGGTTAACACGGCAGGCATCTGTATAACCCCTGGACGGTTGACTCCCATCTTCTACGACCAAATGGAAGCCGCAGTAAATGTGAGTTATGGTTTGTATCGTTATGGTCCATTCTTGGTTAATCTGCAAGACTGCACATTTGTCAGGGACACATTCACTGTCATAAGTAATAGGAATTGTCCTGGCCTTCGAAAACATAGCAGCTGGATCTACATTGGGCTGGTAATGGTATCTGCAGCTGTCATGTTATCGTTGATCTTTTGGGTAATCTACGCAAGGGAACGAAGGCACCGCGTGTACACCAAGCAGTTTATGGCTGGAGGTGGAGGAACAGGGGGATTCCAAGTCCAAGACAAGGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

545

Amino Acids

60.32

Weight (kDa)

7.46

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 599, 1560
AccB7I CCANNNNNTGG 1 cut(s) 925
AccI GTMKAC 2 cut(s) 846, 1080
AccII CGCG 1 cut(s) 1566
AccIII TCCGGA 2 cut(s) 68, 576
AclWI GGATC 1 cut(s) 1487
AcsI RAATTY 2 cut(s) 580, 721
AdeI CACNNNGTG 1 cut(s) 1567
AfaI GTAC 4 cut(s) 248, 491, 520, 1571
AfiI CCNNNNNNNGG 8 cut(s) 609, 828, 925, 1009, 1130, 1225, 1308, 1627
AgsI TTSAA 2 cut(s) 569, 1147
AjnI CCWGG 2 cut(s) 1303, 1453
AleI CACNNNNGTG 2 cut(s) 1250, 1252
AloI GAACNNNNNNTCC 2 cut(s) 468, 500
AluBI AGCT 3 cut(s) 357, 1476, 1511
AluI AGCT 3 cut(s) 357, 1476, 1511
Alw26I GTCTC 3 cut(s) 162, 192, 1025
AlwI GGATC 1 cut(s) 1487
Aor13HI TCCGGA 2 cut(s) 68, 576
AoxI GGCC 3 cut(s) 798, 1156, 1456
ApeKI GCWGC 5 cut(s) 689, 779, 1044, 1473, 1508
ApoI RAATTY 2 cut(s) 580, 721
ArsI GACNNNNNNTTYG 2 cut(s) 1394, 1426
AspS9I GGNCC 5 cut(s) 223, 961, 1133, 1157, 1379
AsuHPI GGTGA 5 cut(s) 55, 122, 145, 868, 1235
AsuII TTCGAA 1 cut(s) 1462
AvaII GGWCC 4 cut(s) 223, 961, 1133, 1379
BaeGI GKGCMC 2 cut(s) 887, 1219
BaeI ACNNNNGTAYC 2 cut(s) 549, 582
BanI GGYRCC 2 cut(s) 599, 1560
BbvI GCAGC 5 cut(s) 676, 766, 1056, 1485, 1520
BccI CCATC 4 cut(s) 252, 646, 1069, 1328
BceAI ACGGC 1 cut(s) 1299
BciT130I CCWGG 2 cut(s) 1305, 1455
BciVI GTATCC 3 cut(s) 139, 550, 1045
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 3 cut(s) 162, 192, 1025
BfmI CTRYAG 3 cut(s) 176, 1235, 1506
BfuI GTATCC 3 cut(s) 139, 550, 1045
BisI GCNGC 8 cut(s) 465, 603, 690, 780, 1045, 1344, 1474, 1509
BlpI GCTNAGC 2 cut(s) 353, 606
BlsI GCNGC 8 cut(s) 466, 604, 691, 781, 1046, 1345, 1475, 1510
Bme1390I CCNGG 2 cut(s) 1305, 1455
Bme18I GGWCC 4 cut(s) 223, 961, 1133, 1379
BmgT120I GGNCC 5 cut(s) 223, 961, 1133, 1157, 1379
BmiI GGNNCC 5 cut(s) 225, 309, 601, 962, 1562
BmrFI CCNGG 2 cut(s) 1305, 1455
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 4 cut(s) 467, 822, 925, 1299
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 1611
Bpu1102I GCTNAGC 2 cut(s) 353, 606
Bpu14I TTCGAA 1 cut(s) 1462
BpuEI CTTGAG 1 cut(s) 1011
BsaBI GATNNNNATC 1 cut(s) 171
BsaI GGTCTC 2 cut(s) 162, 1025
BsaJI CCNNGG 3 cut(s) 948, 1219, 1303
BsaWI WCCGGW 2 cut(s) 68, 576
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 8 cut(s) 609, 828, 925, 1009, 1130, 1225, 1308, 1627
Bse1I ACTGG 4 cut(s) 256, 287, 499, 765
Bse3DI GCAATG 2 cut(s) 277, 321
Bse8I GATNNNNATC 1 cut(s) 171
BseAI TCCGGA 2 cut(s) 68, 576
BseBI CCWGG 2 cut(s) 1305, 1455
BseDI CCNNGG 3 cut(s) 948, 1219, 1303
BseGI GGATG 7 cut(s) 172, 263, 438, 482, 837, 958, 1080
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 8 cut(s) 609, 828, 925, 1009, 1130, 1225, 1308, 1627
BseMI GCAATG 2 cut(s) 277, 321
BseNI ACTGG 4 cut(s) 256, 287, 499, 765
BseRI GAGGAG 2 cut(s) 38, 905
BseSI GKGCMC 2 cut(s) 887, 1219
BseXI GCAGC 5 cut(s) 676, 766, 1056, 1485, 1520
BsgI GTGCAG 1 cut(s) 1390
Bsh1236I CGCG 1 cut(s) 1566
BshFI GGCC 3 cut(s) 800, 1158, 1458
BshNI GGYRCC 2 cut(s) 599, 1560
BsiSI CCGG 2 cut(s) 69, 577
BslFI GGGAC 1 cut(s) 1433
BslI CCNNNNNNNGG 8 cut(s) 609, 828, 925, 1009, 1130, 1225, 1308, 1627
BsmAI GTCTC 3 cut(s) 162, 192, 1025
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 1433
BsmI GAATGC 1 cut(s) 1246
BsnI GGCC 3 cut(s) 800, 1158, 1458
Bso31I GGTCTC 2 cut(s) 162, 1025
Bsp119I TTCGAA 1 cut(s) 1462
Bsp1286I GDGCHC 2 cut(s) 887, 1219
Bsp13I TCCGGA 2 cut(s) 68, 576
Bsp1407I TGTACA 2 cut(s) 489, 1569
Bsp143I GATC 8 cut(s) 274, 342, 727, 994, 1195, 1204, 1479, 1527
Bsp1720I GCTNAGC 2 cut(s) 353, 606
Bsp19I CCATGG 1 cut(s) 948
BspANI GGCC 3 cut(s) 800, 1158, 1458
BspEI TCCGGA 2 cut(s) 68, 576
BspFNI CGCG 1 cut(s) 1566
BspLI GGNNCC 5 cut(s) 225, 309, 601, 962, 1562
BspMAI CTGCAG 3 cut(s) 180, 1239, 1510
BspPI GGATC 1 cut(s) 1487
BspT104I TTCGAA 1 cut(s) 1462
BspT107I GGYRCC 2 cut(s) 599, 1560
BspTNI GGTCTC 2 cut(s) 162, 1025
BsrDI GCAATG 2 cut(s) 277, 321
BsrGI TGTACA 2 cut(s) 489, 1569
BsrI ACTGG 4 cut(s) 256, 287, 499, 765
BssECI CCNNGG 3 cut(s) 948, 1219, 1303
BssMI GATC 8 cut(s) 274, 342, 727, 994, 1195, 1204, 1479, 1527
BssNAI GTATAC 1 cut(s) 847
BssT1I CCWWGG 2 cut(s) 948, 1219
Bst1107I GTATAC 1 cut(s) 847
Bst2UI CCWGG 2 cut(s) 1305, 1455
Bst4CI ACNGT 5 cut(s) 460, 565, 1137, 1311, 1432
Bst6I CTCTTC 2 cut(s) 56, 1253
BstAUI TGTACA 2 cut(s) 489, 1569
BstBI TTCGAA 1 cut(s) 1462
BstC8I GCNNGC 3 cut(s) 837, 883, 1288
BstDEI CTNAG 3 cut(s) 353, 606, 1635
BstDSI CCRYGG 1 cut(s) 948
BstENI CCTNNNNNAGG 1 cut(s) 1223
BstF5I GGATG 7 cut(s) 172, 263, 438, 482, 837, 958, 1080
BstFNI CGCG 1 cut(s) 1566
BstKTI GATC 8 cut(s) 277, 345, 730, 997, 1198, 1207, 1482, 1530
BstMAI GTCTC 3 cut(s) 162, 192, 1025
BstMBI GATC 8 cut(s) 274, 342, 727, 994, 1195, 1204, 1479, 1527
BstMWI GCNNNNNNNGC 3 cut(s) 293, 302, 983
BstNI CCWGG 2 cut(s) 1305, 1455
BstNSI RCATGY 1 cut(s) 942
BstSCI CCNGG 2 cut(s) 1303, 1453
BstSFI CTRYAG 3 cut(s) 176, 1235, 1506
BstSLI GKGCMC 2 cut(s) 887, 1219
BstUI CGCG 1 cut(s) 1566
BstV1I GCAGC 5 cut(s) 676, 766, 1056, 1485, 1520
BstX2I RGATCY 1 cut(s) 1479
BstYI RGATCY 1 cut(s) 1479
BstZ17I GTATAC 1 cut(s) 847
BsuI GTATCC 3 cut(s) 139, 550, 1045
BsuRI GGCC 3 cut(s) 800, 1158, 1458
BtgI CCRYGG 1 cut(s) 948
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 7 cut(s) 172, 263, 438, 482, 837, 958, 1080
BtsIMutI CAGTG 4 cut(s) 249, 456, 492, 1428
Cac8I GCNNGC 3 cut(s) 837, 883, 1288
Cfr13I GGNCC 5 cut(s) 223, 961, 1133, 1157, 1379
Csp6I GTAC 4 cut(s) 247, 490, 519, 1570
CviAII CATG 3 cut(s) 939, 949, 1516
CviQI GTAC 4 cut(s) 247, 490, 519, 1570
DdeI CTNAG 3 cut(s) 353, 606, 1635
DpnI GATC 8 cut(s) 276, 344, 729, 996, 1197, 1206, 1481, 1529
DpnII GATC 8 cut(s) 274, 342, 727, 994, 1195, 1204, 1479, 1527
DraIII CACNNNGTG 1 cut(s) 1567
Eam1104I CTCTTC 2 cut(s) 56, 1253
EarI CTCTTC 2 cut(s) 56, 1253
EciI GGCGGA 1 cut(s) 569
Eco130I CCWWGG 2 cut(s) 948, 1219
Eco31I GGTCTC 2 cut(s) 162, 1025
Eco47I GGWCC 4 cut(s) 223, 961, 1133, 1379
EcoNI CCTNNNNNAGG 1 cut(s) 1223
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 1303, 1453
EcoT14I CCWWGG 2 cut(s) 948, 1219
EcoT22I ATGCAT 2 cut(s) 482, 940
ErhI CCWWGG 2 cut(s) 948, 1219
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 3 cut(s) 942, 952, 1519
FalI AAGNNNNNCTT 2 cut(s) 385, 417
FaqI GGGAC 1 cut(s) 1433
FatI CATG 3 cut(s) 938, 948, 1515
FauI CCCGC 1 cut(s) 874
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 2 cut(s) 846, 1080
Fnu4HI GCNGC 8 cut(s) 465, 603, 690, 780, 1045, 1344, 1474, 1509
FokI GGATG 7 cut(s) 179, 270, 425, 489, 844, 965, 1087
Fsp4HI GCNGC 8 cut(s) 465, 603, 690, 780, 1045, 1344, 1474, 1509
GluI GCNGC 8 cut(s) 465, 603, 690, 780, 1045, 1344, 1474, 1509
GsuI CTGGAG 1 cut(s) 1611
HaeIII GGCC 3 cut(s) 800, 1158, 1458
HapII CCGG 2 cut(s) 69, 577
Hin1II CATG 3 cut(s) 942, 952, 1519
HincII GTYRAC 3 cut(s) 622, 1279, 1314
HindII GTYRAC 3 cut(s) 622, 1279, 1314
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 8 cut(s) 172, 193, 211, 547, 623, 871, 1315, 1611
HpaI GTTAAC 1 cut(s) 1279
HpaII CCGG 2 cut(s) 69, 577
HphI GGTGA 5 cut(s) 55, 122, 145, 868, 1235
Hpy188I TCNGA 6 cut(s) 192, 643, 651, 706, 727, 1204
Hpy188III TCNNGA 6 cut(s) 69, 230, 340, 414, 577, 1028
Hpy99I CGWCG 1 cut(s) 743
HpyAV CCTTC 7 cut(s) 53, 147, 196, 214, 322, 1469, 1551
HpyCH4III ACNGT 5 cut(s) 460, 565, 1137, 1311, 1432
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 302, 983
HpyF3I CTNAG 3 cut(s) 353, 606, 1635
Hsp92II CATG 3 cut(s) 942, 952, 1519
Kpn2I TCCGGA 2 cut(s) 68, 576
Ksp22I TGATCA 1 cut(s) 274
KspAI GTTAAC 1 cut(s) 1279
Kzo9I GATC 8 cut(s) 274, 342, 727, 994, 1195, 1204, 1479, 1527
Lsp1109I GCAGC 5 cut(s) 676, 766, 1056, 1485, 1520
LweI GCATC 4 cut(s) 467, 822, 925, 1299
MaeIII GTNAC 1 cut(s) 377
MalI GATC 8 cut(s) 276, 344, 729, 996, 1197, 1206, 1481, 1529
MboI GATC 8 cut(s) 274, 342, 727, 994, 1195, 1204, 1479, 1527
MboII GAAGA 5 cut(s) 43, 445, 902, 1270, 1315
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 1479
MhlI GDGCHC 2 cut(s) 887, 1219
MluCI AATT 5 cut(s) 468, 580, 721, 1096, 1447
MlyI GAGTC 3 cut(s) 205, 617, 1309
MmeI TCCRAC 1 cut(s) 454
Mph1103I ATGCAT 2 cut(s) 482, 940
MroI TCCGGA 2 cut(s) 68, 576
MseI TTAA 4 cut(s) 12, 1110, 1278, 1392
MslI CAYNNNNRTG 2 cut(s) 1250, 1252
MspA1I CMGCKG 2 cut(s) 1476, 1511
MspI CCGG 2 cut(s) 69, 577
MspR9I CCNGG 2 cut(s) 1305, 1455
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 1246
MvaI CCWGG 2 cut(s) 1305, 1455
MvnI CGCG 1 cut(s) 1566
MwoI GCNNNNNNNGC 3 cut(s) 293, 302, 983
NcoI CCATGG 1 cut(s) 948
NdeII GATC 8 cut(s) 274, 342, 727, 994, 1195, 1204, 1479, 1527
NlaIII CATG 3 cut(s) 942, 952, 1519
NlaIV GGNNCC 5 cut(s) 225, 309, 601, 962, 1562
NsiI ATGCAT 2 cut(s) 482, 940
NspI RCATGY 1 cut(s) 942
NspV TTCGAA 1 cut(s) 1462
OliI CACNNNNGTG 2 cut(s) 1250, 1252
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PctI GAATGC 1 cut(s) 1246
PfeI GAWTC 5 cut(s) 172, 193, 547, 871, 1611
PflFI GACNNNGTC 2 cut(s) 626, 1085
PflMI CCANNNNNTGG 1 cut(s) 925
PkrI GCNGC 8 cut(s) 466, 604, 691, 781, 1046, 1345, 1475, 1510
PleI GAGTC 3 cut(s) 205, 617, 1309
PpsI GAGTC 3 cut(s) 205, 617, 1309
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 1303, 1453
PspGI CCWGG 2 cut(s) 1303, 1453
PspN4I GGNNCC 5 cut(s) 225, 309, 601, 962, 1562
PspPI GGNCC 5 cut(s) 223, 961, 1133, 1157, 1379
PspPPI RGGWCCY 1 cut(s) 223
PstI CTGCAG 3 cut(s) 180, 1239, 1510
PsuI RGATCY 1 cut(s) 1479
PsyI GACNNNGTC 2 cut(s) 626, 1085
PvuII CAGCTG 2 cut(s) 1476, 1511
RsaI GTAC 4 cut(s) 248, 491, 520, 1571
RsaNI GTAC 4 cut(s) 247, 490, 519, 1570
RseI CAYNNNNRTG 2 cut(s) 1250, 1252
SaqAI TTAA 4 cut(s) 12, 1110, 1278, 1392
SatI GCNGC 8 cut(s) 465, 603, 690, 780, 1045, 1344, 1474, 1509
Sau3AI GATC 8 cut(s) 274, 342, 727, 994, 1195, 1204, 1479, 1527
Sau96I GGNCC 5 cut(s) 223, 961, 1133, 1157, 1379
SchI GAGTC 3 cut(s) 205, 617, 1309
ScrFI CCNGG 2 cut(s) 1305, 1455
SduI GDGCHC 2 cut(s) 887, 1219
SfaNI GCATC 4 cut(s) 467, 822, 925, 1299
SfcI CTRYAG 3 cut(s) 176, 1235, 1506
SfuI TTCGAA 1 cut(s) 1462
SinI GGWCC 4 cut(s) 223, 961, 1133, 1379
SmiMI CAYNNNNRTG 2 cut(s) 1250, 1252
SmlI CTYRAG 1 cut(s) 1026
SmoI CTYRAG 1 cut(s) 1026
Sse9I AATT 5 cut(s) 468, 580, 721, 1096, 1447
StyD4I CCNGG 2 cut(s) 1303, 1453
StyI CCWWGG 2 cut(s) 948, 1219
TaaI ACNGT 5 cut(s) 460, 565, 1137, 1311, 1432
TaqI TCGA 5 cut(s) 97, 413, 534, 1207, 1462
TasI AATT 5 cut(s) 468, 580, 721, 1096, 1447
TatI WGTACW 4 cut(s) 246, 489, 518, 1569
TauI GCSGC 3 cut(s) 467, 605, 1346
TfiI GAWTC 5 cut(s) 172, 193, 547, 871, 1611
Tru1I TTAA 4 cut(s) 12, 1110, 1278, 1392
Tru9I TTAA 4 cut(s) 12, 1110, 1278, 1392
TscAI CASTG 4 cut(s) 256, 463, 499, 1435
TseI GCWGC 5 cut(s) 689, 779, 1044, 1473, 1508
TspDTI ATGAA 4 cut(s) 43, 230, 880, 969
TspGWI ACGGA 2 cut(s) 616, 756
TspRI CASTG 4 cut(s) 256, 463, 499, 1435
Tth111I GACNNNGTC 2 cut(s) 626, 1085
Van91I CCANNNNNTGG 1 cut(s) 925
VpaK11BI GGWCC 4 cut(s) 223, 961, 1133, 1379
XagI CCTNNNNNAGG 1 cut(s) 1223
XapI RAATTY 2 cut(s) 580, 721
XceI RCATGY 1 cut(s) 942
XcmI CCANNNNNNNNNTGG 1 cut(s) 1582
XmiI GTMKAC 2 cut(s) 846, 1080
Zsp2I ATGCAT 2 cut(s) 482, 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.