Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003755

Physical Location & Seq

Genomic Coordinates Reverse (-)

38191488 .. 38195240

Gene Structure 3753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGTCAATCTTTAACTCAAAAAAACTGCTTCTTTTCCTCTCCCTTTTCCTCTTCATCGCTCTCCCCTCCGGAAACACTCACATTTCTCACACATTTCGAGGCAGAGGTGGTGATGTTGAGAGAGATGTGATGACAATGGATACAAGAAGGTCTCTTGCGGATGAGAATCTGCAGAACTCGTCTCTGATTCTGGCGAAGGAGAGGACTCGCAGGAAGGACCCTCTTGATGATTTTCATAAGTACACTGGTCGATGGAATATCAGCAATGATCATTACTGGGCTTCTGTTGCTTGGACTGCAGTTCCCTTCTTTCTCATTGCTGGTCTGTGTGTTGGATGCATTGTTCTGTACACTGGTCAGGCAAAGTTTCACAGCAGTACAACAAAGACACTCGATTATGTCGTGAGTCAGGCGGATACAACTGTTGAAAGCTTCCAGAATTTGTCAGGTTATCTTGGTGCAGCTAAGCGGACTGGAGTTGACTCCGTCTTTCTGCCATCAGATGTTCAGAGTAACATTGACACGACTATAACTCAACTCAACTCTGCTGCCTCTAAACTTTCTAATACAACTGAAAAGAATTCAAATCGTATAGATGATGGATTGGATAGCGTAAGACTGGCTCTCATTGTCCTTGCTGCTGTTATGCTCTGTTTGGCCTTTCTTGGATTTTATAGTCATATGATTGTAGTCACCGGACCTATTAGTGTGGTTGCAGATGCATGTGTTTCCATGGATGAATGGGTCCAGCACCCCACTGCCCGTACTGCTTTAGATGATCTACTCCCTTGTGTGGACAATGCTACTGCTCAAGAGACTTCATCACTCACCAAGGATACAACCTACAAACTTGTGAGCATGGTAGACAAGGTCATCAACAATATCTCAAATCTTAACAATCCACCACCCCAACTTGGACCGTTATATTTCAATCAGTCTGGCCCTCTATTACCTGTTCTTTGCAACCCATACAACACCGATCTCACTGATCGCAAGTGTGCCTCTGGTGAGGTGGGACTGCAGAATGCCACACAGGTGTGGAAGAGTTATGTGTGTAAGGTTAACACGGCAGGCATCTGTATAACTCCTGGACGGTTGACTCCCATCTTCTACGACCAAATGGAAGCTGCAGTAAATGTGAGTTATGGTCTGTATACTTATGGTCCATTCTTGGTTGATCTGCAAGACTGCACATTTGTCAGGGACACATTCACCGACATAAGTAATAGGAATTGTCCTGGCCTTCGAAAACATAGCAGCTGGATCTACATTGGGCTGGTAATTGTATCTGCAGCAGTCATGTTATCGTTGATCTTTTGGGTAATCTACGCAAGGGAACGAAGGGACCGCGTGTACACCAAGCAGTTTATGGCTGGAGGTGGAGAAACAGGGGGATTCCAAGTCCAAGACGAGGGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

473

Amino Acids

52.22

Weight (kDa)

6.08

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12400
fragaria_vesca	FvH4_1g01880
malus_domestica	MD02G1016700.v1.1 MD15G1161200.v1.1
prunus_persica	Prupe.7G256400_v2.0.a1
pyrus_communis	pycom02g01500 pycom02g01540 pycom15g14490
rosa_chinensis	RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861
rosa_laevigata	RLG00000015810
rosa_multiflora	Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154080 Rroxscaffold_4G00314220
rosa_rugosa	Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300
rosa_samantha	Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500
rosa_wichuraiana	Rw1G012710 Rw2G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	864, 1154
AccII	CGCG	1 cut(s)	1350
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	4 cut(s)	158, 413, 469, 1348
AclWI	GGATC	1 cut(s)	1271
AcsI	RAATTY	2 cut(s)	439, 580
AfaI	GTAC	5 cut(s)	242, 350, 379, 766, 1355
AfiI	CCNNNNNNNGG	3 cut(s)	793, 914, 1411
AgsI	TTSAA	3 cut(s)	428, 585, 931
AjnI	CCWGG	2 cut(s)	1087, 1237
AleI	CACNNNNGTG	2 cut(s)	1034, 1036
AloI	GAACNNNNNNTCC	2 cut(s)	327, 359
AluBI	AGCT	4 cut(s)	432, 464, 1127, 1260
AluI	AGCT	4 cut(s)	432, 464, 1127, 1260
Alw26I	GTCTC	3 cut(s)	156, 186, 809
AlwI	GGATC	1 cut(s)	1271
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	3 cut(s)	657, 940, 1240
ApeKI	GCWGC	6 cut(s)	461, 548, 638, 1127, 1257, 1292
ApoI	RAATTY	2 cut(s)	439, 580
ArsI	GACNNNNNNTTYG	2 cut(s)	1178, 1210
AspS9I	GGNCC	7 cut(s)	217, 698, 745, 917, 941, 1163, 1345
AsuHPI	GGTGA	5 cut(s)	122, 685, 820, 1019, 1204
AsuII	TTCGAA	1 cut(s)	1246
AvaII	GGWCC	6 cut(s)	217, 698, 745, 917, 1163, 1345
BaeI	ACNNNNGTAYC	2 cut(s)	408, 441
BbvI	GCAGC	6 cut(s)	473, 535, 625, 1114, 1269, 1304
BccI	CCATC	4 cut(s)	246, 505, 593, 1112
BceAI	ACGGC	1 cut(s)	1083
BciT130I	CCWGG	2 cut(s)	1089, 1239
BciVI	GTATCC	3 cut(s)	133, 409, 829
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	3 cut(s)	156, 186, 809
BfmI	CTRYAG	5 cut(s)	170, 297, 1019, 1128, 1290
BfuI	GTATCC	3 cut(s)	133, 409, 829
BisI	GCNGC	6 cut(s)	462, 549, 639, 1128, 1258, 1293
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	6 cut(s)	463, 550, 640, 1129, 1259, 1294
Bme1390I	CCNGG	2 cut(s)	1089, 1239
Bme18I	GGWCC	6 cut(s)	217, 698, 745, 917, 1163, 1345
BmgT120I	GGNCC	7 cut(s)	217, 698, 745, 917, 941, 1163, 1345
BmiI	GGNNCC	3 cut(s)	219, 746, 1346
BmrFI	CCNGG	2 cut(s)	1089, 1239
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	326, 709, 1083
BmuI	ACTGGG	1 cut(s)	286
BpmI	CTGGAG	2 cut(s)	495, 1395
Bpu1102I	GCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	1246
BpuEI	CTTGAG	1 cut(s)	795
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	732, 831
BsaWI	WCCGGW	2 cut(s)	68, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	793, 914, 1411
Bse1I	ACTGG	5 cut(s)	250, 281, 358, 478, 624
Bse3DI	GCAATG	2 cut(s)	271, 315
Bse8I	GATNNNNATC	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	1089, 1239
BseDI	CCNNGG	2 cut(s)	732, 831
BseGI	GGATG	3 cut(s)	166, 341, 742
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	793, 914, 1411
BseMI	GCAATG	2 cut(s)	271, 315
BseNI	ACTGG	5 cut(s)	250, 281, 358, 478, 624
BseXI	GCAGC	6 cut(s)	473, 535, 625, 1114, 1269, 1304
BsgI	GTGCAG	2 cut(s)	480, 1174
Bsh1236I	CGCG	1 cut(s)	1350
BshFI	GGCC	3 cut(s)	659, 942, 1242
BsiSI	CCGG	2 cut(s)	69, 696
BslFI	GGGAC	3 cut(s)	1029, 1217, 1358
BslI	CCNNNNNNNGG	3 cut(s)	793, 914, 1411
BsmAI	GTCTC	3 cut(s)	156, 186, 809
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	3 cut(s)	1029, 1217, 1358
BsmI	GAATGC	1 cut(s)	1030
BsnI	GGCC	3 cut(s)	659, 942, 1242
Bso31I	GGTCTC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	1246
Bsp13I	TCCGGA	1 cut(s)	68
Bsp1407I	TGTACA	2 cut(s)	348, 1353
Bsp143I	GATC	7 cut(s)	268, 778, 979, 988, 1177, 1263, 1311
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	732
BspACI	CCGC	4 cut(s)	158, 413, 469, 1348
BspANI	GGCC	3 cut(s)	659, 942, 1242
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	1350
BspLI	GGNNCC	3 cut(s)	219, 746, 1346
BspMAI	CTGCAG	5 cut(s)	174, 301, 1023, 1132, 1294
BspPI	GGATC	1 cut(s)	1271
BspT104I	TTCGAA	1 cut(s)	1246
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	271, 315
BsrGI	TGTACA	2 cut(s)	348, 1353
BsrI	ACTGG	5 cut(s)	250, 281, 358, 478, 624
BssECI	CCNNGG	2 cut(s)	732, 831
BssMI	GATC	7 cut(s)	268, 778, 979, 988, 1177, 1263, 1311
BssNAI	GTATAC	1 cut(s)	1155
BssT1I	CCWWGG	2 cut(s)	732, 831
Bst1107I	GTATAC	1 cut(s)	1155
Bst2UI	CCWGG	2 cut(s)	1089, 1239
Bst4CI	ACNGT	3 cut(s)	424, 921, 1095
Bst6I	CTCTTC	2 cut(s)	56, 1037
BstAUI	TGTACA	2 cut(s)	348, 1353
BstBI	TTCGAA	1 cut(s)	1246
BstC8I	GCNNGC	1 cut(s)	1072
BstDEI	CTNAG	2 cut(s)	465, 1419
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	3 cut(s)	166, 341, 742
BstFNI	CGCG	1 cut(s)	1350
BstKTI	GATC	7 cut(s)	271, 781, 982, 991, 1180, 1266, 1314
BstMAI	GTCTC	3 cut(s)	156, 186, 809
BstMBI	GATC	7 cut(s)	268, 778, 979, 988, 1177, 1263, 1311
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 296, 767
BstNI	CCWGG	2 cut(s)	1089, 1239
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	2 cut(s)	1087, 1237
BstSFI	CTRYAG	5 cut(s)	170, 297, 1019, 1128, 1290
BstUI	CGCG	1 cut(s)	1350
BstV1I	GCAGC	6 cut(s)	473, 535, 625, 1114, 1269, 1304
BstX2I	RGATCY	1 cut(s)	1263
BstYI	RGATCY	1 cut(s)	1263
BstZ17I	GTATAC	1 cut(s)	1155
BsuI	GTATCC	3 cut(s)	133, 409, 829
BsuRI	GGCC	3 cut(s)	659, 942, 1242
BtgI	CCRYGG	1 cut(s)	732
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	166, 341, 742
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	4 cut(s)	243, 351, 756, 984
Cac8I	GCNNGC	1 cut(s)	1072
Cfr13I	GGNCC	7 cut(s)	217, 698, 745, 917, 941, 1163, 1345
Csp6I	GTAC	5 cut(s)	241, 349, 378, 765, 1354
CviAII	CATG	4 cut(s)	723, 733, 859, 1300
CviQI	GTAC	5 cut(s)	241, 349, 378, 765, 1354
DdeI	CTNAG	2 cut(s)	465, 1419
DpnI	GATC	7 cut(s)	270, 780, 981, 990, 1179, 1265, 1313
DpnII	GATC	7 cut(s)	268, 778, 979, 988, 1177, 1263, 1311
Eam1104I	CTCTTC	2 cut(s)	56, 1037
EarI	CTCTTC	2 cut(s)	56, 1037
EciI	GGCGGA	1 cut(s)	428
Eco130I	CCWWGG	2 cut(s)	732, 831
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	6 cut(s)	217, 698, 745, 917, 1163, 1345
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	2 cut(s)	1087, 1237
EcoT14I	CCWWGG	2 cut(s)	732, 831
EcoT22I	ATGCAT	2 cut(s)	341, 724
ErhI	CCWWGG	2 cut(s)	732, 831
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	4 cut(s)	726, 736, 862, 1303
FaqI	GGGAC	3 cut(s)	1029, 1217, 1358
FatI	CATG	4 cut(s)	722, 732, 858, 1299
FauNDI	CATATG	1 cut(s)	681
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	2 cut(s)	864, 1154
Fnu4HI	GCNGC	6 cut(s)	462, 549, 639, 1128, 1258, 1293
FokI	GGATG	3 cut(s)	173, 348, 749
Fsp4HI	GCNGC	6 cut(s)	462, 549, 639, 1128, 1258, 1293
GluI	GCNGC	6 cut(s)	462, 549, 639, 1128, 1258, 1293
GsuI	CTGGAG	2 cut(s)	495, 1395
HaeIII	GGCC	3 cut(s)	659, 942, 1242
HapII	CCGG	2 cut(s)	69, 696
Hin1II	CATG	4 cut(s)	726, 736, 862, 1303
HincII	GTYRAC	3 cut(s)	481, 1063, 1098
HindII	GTYRAC	3 cut(s)	481, 1063, 1098
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	7 cut(s)	166, 187, 205, 406, 482, 1099, 1395
HpaI	GTTAAC	1 cut(s)	1063
HpaII	CCGG	2 cut(s)	69, 696
HphI	GGTGA	5 cut(s)	122, 685, 820, 1019, 1204
Hpy188I	TCNGA	3 cut(s)	186, 502, 510
Hpy188III	TCNNGA	5 cut(s)	69, 224, 403, 436, 812
HpyAV	CCTTC	6 cut(s)	141, 190, 208, 316, 1253, 1335
HpyCH4III	ACNGT	3 cut(s)	424, 921, 1095
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 296, 767
HpyF3I	CTNAG	2 cut(s)	465, 1419
Hsp92II	CATG	4 cut(s)	726, 736, 862, 1303
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	1063
Kzo9I	GATC	7 cut(s)	268, 778, 979, 988, 1177, 1263, 1311
Lsp1109I	GCAGC	6 cut(s)	473, 535, 625, 1114, 1269, 1304
LweI	GCATC	3 cut(s)	326, 709, 1083
MaeIII	GTNAC	2 cut(s)	512, 691
MalI	GATC	7 cut(s)	270, 780, 981, 990, 1179, 1265, 1313
MboI	GATC	7 cut(s)	268, 778, 979, 988, 1177, 1263, 1311
MboII	GAAGA	3 cut(s)	43, 1054, 1099
MflI	RGATCY	1 cut(s)	1263
MluCI	AATT	4 cut(s)	439, 580, 1231, 1281
MlyI	GAGTC	4 cut(s)	199, 415, 476, 1093
MmeI	TCCRAC	1 cut(s)	313
Mph1103I	ATGCAT	2 cut(s)	341, 724
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	3 cut(s)	12, 894, 1062
MslI	CAYNNNNRTG	2 cut(s)	1034, 1036
MspA1I	CMGCKG	1 cut(s)	1260
MspI	CCGG	2 cut(s)	69, 696
MspR9I	CCNGG	2 cut(s)	1089, 1239
Mva1269I	GAATGC	1 cut(s)	1030
MvaI	CCWGG	2 cut(s)	1089, 1239
MvnI	CGCG	1 cut(s)	1350
MwoI	GCNNNNNNNGC	3 cut(s)	287, 296, 767
NcoI	CCATGG	1 cut(s)	732
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	7 cut(s)	268, 778, 979, 988, 1177, 1263, 1311
NlaIII	CATG	4 cut(s)	726, 736, 862, 1303
NlaIV	GGNNCC	3 cut(s)	219, 746, 1346
NmuCI	GTSAC	1 cut(s)	691
NsiI	ATGCAT	2 cut(s)	341, 724
NspI	RCATGY	1 cut(s)	726
NspV	TTCGAA	1 cut(s)	1246
OliI	CACNNNNGTG	2 cut(s)	1034, 1036
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	1 cut(s)	1030
PfeI	GAWTC	3 cut(s)	166, 187, 1395
PflFI	GACNNNGTC	2 cut(s)	485, 869
PfoI	TCCNGGA	1 cut(s)	1087
PkrI	GCNGC	6 cut(s)	463, 550, 640, 1129, 1259, 1294
PleI	GAGTC	4 cut(s)	199, 414, 476, 1093
PpsI	GAGTC	4 cut(s)	199, 414, 476, 1093
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	1087, 1237
PspGI	CCWGG	2 cut(s)	1087, 1237
PspN4I	GGNNCC	3 cut(s)	219, 746, 1346
PspPI	GGNCC	7 cut(s)	217, 698, 745, 917, 941, 1163, 1345
PspPPI	RGGWCCY	1 cut(s)	217
PstI	CTGCAG	5 cut(s)	174, 301, 1023, 1132, 1294
PsuI	RGATCY	1 cut(s)	1263
PsyI	GACNNNGTC	2 cut(s)	485, 869
PvuII	CAGCTG	1 cut(s)	1260
RsaI	GTAC	5 cut(s)	242, 350, 379, 766, 1355
RsaNI	GTAC	5 cut(s)	241, 349, 378, 765, 1354
RseI	CAYNNNNRTG	2 cut(s)	1034, 1036
SaqAI	TTAA	3 cut(s)	12, 894, 1062
SatI	GCNGC	6 cut(s)	462, 549, 639, 1128, 1258, 1293
Sau3AI	GATC	7 cut(s)	268, 778, 979, 988, 1177, 1263, 1311
Sau96I	GGNCC	7 cut(s)	217, 698, 745, 917, 941, 1163, 1345
SchI	GAGTC	4 cut(s)	199, 415, 476, 1093
ScrFI	CCNGG	2 cut(s)	1089, 1239
SfaNI	GCATC	3 cut(s)	326, 709, 1083
SfcI	CTRYAG	5 cut(s)	170, 297, 1019, 1128, 1290
SfuI	TTCGAA	1 cut(s)	1246
SinI	GGWCC	6 cut(s)	217, 698, 745, 917, 1163, 1345
SmiMI	CAYNNNNRTG	2 cut(s)	1034, 1036
SmlI	CTYRAG	1 cut(s)	810
SmoI	CTYRAG	1 cut(s)	810
Sse9I	AATT	4 cut(s)	439, 580, 1231, 1281
SsiI	CCGC	4 cut(s)	158, 413, 469, 1348
StyD4I	CCNGG	2 cut(s)	1087, 1237
StyI	CCWWGG	2 cut(s)	732, 831
TaaI	ACNGT	3 cut(s)	424, 921, 1095
TaqI	TCGA	4 cut(s)	97, 250, 393, 1246
TasI	AATT	4 cut(s)	439, 580, 1231, 1281
TatI	WGTACW	4 cut(s)	240, 348, 377, 1353
TfiI	GAWTC	3 cut(s)	166, 187, 1395
Tru1I	TTAA	3 cut(s)	12, 894, 1062
Tru9I	TTAA	3 cut(s)	12, 894, 1062
TscAI	CASTG	4 cut(s)	250, 358, 763, 991
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	6 cut(s)	461, 548, 638, 1127, 1257, 1292
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	4 cut(s)	43, 224, 753, 810
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	4 cut(s)	250, 358, 763, 991
Tth111I	GACNNNGTC	2 cut(s)	485, 869
VpaK11BI	GGWCC	6 cut(s)	217, 698, 745, 917, 1163, 1345
XapI	RAATTY	2 cut(s)	439, 580
XceI	RCATGY	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1366
XmiI	GTMKAC	2 cut(s)	864, 1154
Zsp2I	ATGCAT	2 cut(s)	341, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.