Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002772.1

Orthogroup ID

OG0003755

Physical Location & Seq

Genomic Coordinates Forward (+)

13098 .. 16195

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002772.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgaagcaaggctacatcaaaggcgacaacaccaagcacatatcgcccaaatttttctacaatcagcaacaacagaagcttctcaagatcaaagtaaaccaggttcaatttgaggacgatttggcagatttgtttaccaataatcagggggaggcgcagacatcagggggagatgtctacatgttcgtctcgaagcgtgaagggtgtgttgcgttcttttttcccttcgaccgaggtggtgatgttgagagagatgtgatgacaatggatacaagaaggtctcttgcggatgagaatctgcagaactcgtctctgattctggcgaaggagaggactcgcaggaaggaccctcttgatgattttcataagtacactggtggatggaatatcagcaatgatcattactgggcttctgttgcttggactgcggttcccttctttctcattgctggtctgtggttcatgatctttgggctaagcttgacacttatttgtttctgttactgctgttggccaagagagccttatggttattcgagaacagcctatgctctctctctcatcttccttatcttcttcactgtcgcggcaattgttggatgcattgttctgtacactggtcaggcaaagtttcacagcagtacaacaaagacactcgattatgtcgtgagtcaggcggatacaactgttgaaagcctccggaatttgtcaggttatcttggtgcagctaagcggactggagttgactccgtctttctgccatcagatgttcagagtaacattgacacgactataacgaaactcaactctgctgcctctaaactttctaatacaactgaaaagaattcaaatcgtatagatgatggattggatagcgtgcatctgtataactcctggacggttgactcccatcttctacgaccaatggaagctgcagtaaatgtgagttatggtctgtatacttatggtccattcttggttgatctgcaagactgcacatttgtcagggacacattcaccgacataagtaataggaattgtcctggcctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

39.52

Weight (kDa)

5.88

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12400
fragaria_vesca	FvH4_1g01880
malus_domestica	MD02G1016700.v1.1 MD15G1161200.v1.1
prunus_persica	Prupe.7G256400_v2.0.a1
pyrus_communis	pycom02g01500 pycom02g01540 pycom15g14490
rosa_chinensis	RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861
rosa_laevigata	RLG00000015810
rosa_multiflora	Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154080 Rroxscaffold_4G00314220
rosa_rugosa	Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300
rosa_samantha	Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500
rosa_wichuraiana	Rw1G012710 Rw2G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	177, 959
AccII	CGCG	1 cut(s)	587
AccIII	TCCGGA	1 cut(s)	699
AciI	CCGC	5 cut(s)	287, 428, 587, 677, 733
AcoI	YGGCCR	1 cut(s)	512
AcsI	RAATTY	3 cut(s)	50, 703, 844
AfaI	GTAC	3 cut(s)	371, 614, 643
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	3 cut(s)	107, 692, 849
AjnI	CCWGG	3 cut(s)	99, 893, 1042
AloI	GAACNNNNNNTCC	2 cut(s)	591, 623
AluBI	AGCT	4 cut(s)	79, 480, 728, 932
AluI	AGCT	4 cut(s)	79, 480, 728, 932
Alw26I	GTCTC	3 cut(s)	193, 285, 315
Aor13HI	TCCGGA	1 cut(s)	699
AoxI	GGCC	2 cut(s)	512, 1045
ApeKI	GCWGC	3 cut(s)	725, 812, 932
ApoI	RAATTY	3 cut(s)	50, 703, 844
ArsI	GACNNNNNNTTYG	2 cut(s)	983, 1015
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	346, 968
AsuHPI	GGTGA	2 cut(s)	251, 1009
AvaII	GGWCC	2 cut(s)	346, 968
BaeI	ACNNNNGTAYC	2 cut(s)	672, 705
BalI	TGGCCA	1 cut(s)	514
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbvI	GCAGC	3 cut(s)	737, 799, 919
BccI	CCATC	4 cut(s)	375, 769, 857, 918
BciT130I	CCWGG	3 cut(s)	101, 895, 1044
BciVI	GTATCC	2 cut(s)	262, 673
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	3 cut(s)	193, 285, 315
BfmI	CTRYAG	2 cut(s)	299, 933
BfuI	GTATCC	2 cut(s)	262, 673
BisI	GCNGC	4 cut(s)	588, 726, 813, 933
BlpI	GCTNAGC	2 cut(s)	476, 729
BlsI	GCNGC	4 cut(s)	589, 727, 814, 934
Bme1390I	CCNGG	3 cut(s)	101, 895, 1044
Bme18I	GGWCC	2 cut(s)	346, 968
BmgT120I	GGNCC	2 cut(s)	346, 968
BmiI	GGNNCC	2 cut(s)	348, 432
BmrFI	CCNGG	3 cut(s)	101, 895, 1044
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	2 cut(s)	590, 889
BmuI	ACTGGG	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	759
Bpu1102I	GCTNAGC	2 cut(s)	476, 729
BpuEI	CTTGAG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	699
Bse1I	ACTGG	4 cut(s)	379, 410, 622, 742
Bse3DI	GCAATG	2 cut(s)	400, 444
Bse8I	GATNNNNATC	1 cut(s)	294
BseAI	TCCGGA	1 cut(s)	699
BseBI	CCWGG	3 cut(s)	101, 895, 1044
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	3 cut(s)	295, 386, 605
BseJI	GATNNNNATC	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	400, 444
BseNI	ACTGG	4 cut(s)	379, 410, 622, 742
BseXI	GCAGC	3 cut(s)	737, 799, 919
BsgI	GTGCAG	2 cut(s)	744, 979
Bsh1236I	CGCG	1 cut(s)	587
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	514, 1047
BsiEI	CGRYCG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	700
BslFI	GGGAC	1 cut(s)	1022
BsmAI	GTCTC	3 cut(s)	193, 285, 315
BsmBI	CGTCTC	2 cut(s)	193, 315
BsmFI	GGGAC	1 cut(s)	1022
BsnI	GGCC	2 cut(s)	514, 1047
Bso31I	GGTCTC	1 cut(s)	285
Bsp13I	TCCGGA	1 cut(s)	699
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	4 cut(s)	87, 397, 465, 982
Bsp1720I	GCTNAGC	2 cut(s)	476, 729
BspACI	CCGC	5 cut(s)	287, 428, 587, 677, 733
BspANI	GGCC	2 cut(s)	514, 1047
BspEI	TCCGGA	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	587
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	348, 432
BspMAI	CTGCAG	2 cut(s)	303, 937
BspTNI	GGTCTC	1 cut(s)	285
BsrDI	GCAATG	2 cut(s)	400, 444
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	4 cut(s)	379, 410, 622, 742
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	4 cut(s)	87, 397, 465, 982
BssNAI	GTATAC	1 cut(s)	960
Bst1107I	GTATAC	1 cut(s)	960
Bst2UI	CCWGG	3 cut(s)	101, 895, 1044
Bst4CI	ACNGT	3 cut(s)	583, 688, 901
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	878
BstDEI	CTNAG	2 cut(s)	476, 729
BstF5I	GGATG	3 cut(s)	295, 386, 605
BstFNI	CGCG	1 cut(s)	587
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	4 cut(s)	90, 400, 468, 985
BstMAI	GTCTC	3 cut(s)	193, 285, 315
BstMBI	GATC	4 cut(s)	87, 397, 465, 982
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 416, 425, 520
BstNI	CCWGG	3 cut(s)	101, 895, 1044
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	3 cut(s)	99, 893, 1042
BstSFI	CTRYAG	2 cut(s)	299, 933
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	3 cut(s)	737, 799, 919
BstZ17I	GTATAC	1 cut(s)	960
BsuI	GTATCC	2 cut(s)	262, 673
BsuRI	GGCC	2 cut(s)	514, 1047
BtsCI	GGATG	3 cut(s)	295, 386, 605
BtsIMutI	CAGTG	3 cut(s)	372, 579, 615
Cac8I	GCNNGC	1 cut(s)	878
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	346, 968
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	370, 613, 642
CviAII	CATG	2 cut(s)	181, 463
CviQI	GTAC	3 cut(s)	370, 613, 642
DdeI	CTNAG	2 cut(s)	476, 729
DpnI	GATC	4 cut(s)	89, 399, 467, 984
DpnII	GATC	4 cut(s)	87, 397, 465, 982
EaeI	YGGCCR	1 cut(s)	512
EciI	GGCGGA	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	346, 968
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	844
EcoRII	CCWGG	3 cut(s)	99, 893, 1042
EcoT22I	ATGCAT	1 cut(s)	605
Esp3I	CGTCTC	2 cut(s)	193, 315
FaeI	CATG	2 cut(s)	184, 466
FalI	AAGNNNNNCTT	2 cut(s)	508, 540
FaqI	GGGAC	1 cut(s)	1022
FatI	CATG	2 cut(s)	180, 462
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	2 cut(s)	177, 959
Fnu4HI	GCNGC	4 cut(s)	588, 726, 813, 933
FokI	GGATG	3 cut(s)	302, 393, 612
Fsp4HI	GCNGC	4 cut(s)	588, 726, 813, 933
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	4 cut(s)	588, 726, 813, 933
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	2 cut(s)	514, 1047
HapII	CCGG	1 cut(s)	700
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	2 cut(s)	184, 466
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	2 cut(s)	745, 904
HindII	GTYRAC	2 cut(s)	745, 904
HindIII	AAGCTT	2 cut(s)	77, 478
HinfI	GANTC	6 cut(s)	295, 316, 334, 670, 746, 905
HpaII	CCGG	1 cut(s)	700
HphI	GGTGA	2 cut(s)	251, 1009
Hpy166II	GTNNAC	8 cut(s)	97, 135, 178, 372, 615, 745, 904, 960
Hpy188I	TCNGA	3 cut(s)	315, 766, 774
Hpy188III	TCNNGA	7 cut(s)	85, 190, 353, 463, 537, 667, 700
Hpy8I	GTNNAC	8 cut(s)	97, 135, 178, 372, 615, 745, 904, 960
HpyAV	CCTTC	6 cut(s)	194, 235, 270, 319, 337, 445
HpyCH4III	ACNGT	3 cut(s)	583, 688, 901
HpyCH4V	TGCA	7 cut(s)	301, 603, 725, 880, 935, 988, 996
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 416, 425, 520
HpyF3I	CTNAG	2 cut(s)	476, 729
Hsp92II	CATG	2 cut(s)	184, 466
HspAI	GCGC	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	699
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	87, 397, 465, 982
Lsp1109I	GCAGC	3 cut(s)	737, 799, 919
LweI	GCATC	2 cut(s)	590, 889
MabI	ACCWGGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	500, 776
MalI	GATC	4 cut(s)	89, 399, 467, 984
MboI	GATC	4 cut(s)	87, 397, 465, 982
MboII	GAAGA	4 cut(s)	556, 565, 568, 905
MfeI	CAATTG	1 cut(s)	591
MlsI	TGGCCA	1 cut(s)	514
MluCI	AATT	6 cut(s)	50, 107, 591, 703, 844, 1036
MluNI	TGGCCA	1 cut(s)	514
MlyI	GAGTC	4 cut(s)	328, 679, 740, 899
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	7 cut(s)	106, 145, 227, 324, 360, 707, 826
Mox20I	TGGCCA	1 cut(s)	514
Mph1103I	ATGCAT	1 cut(s)	605
MroI	TCCGGA	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	514
Msp20I	TGGCCA	1 cut(s)	514
MspI	CCGG	1 cut(s)	700
MspR9I	CCNGG	3 cut(s)	101, 895, 1044
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	3 cut(s)	101, 895, 1044
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	4 cut(s)	43, 416, 425, 520
NdeII	GATC	4 cut(s)	87, 397, 465, 982
NlaIII	CATG	2 cut(s)	184, 466
NlaIV	GGNNCC	2 cut(s)	348, 432
NsiI	ATGCAT	1 cut(s)	605
NspI	RCATGY	1 cut(s)	184
PagI	TCATGA	1 cut(s)	462
PciI	ACATGT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	663, 794
PfeI	GAWTC	2 cut(s)	295, 316
PflFI	GACNNNGTC	1 cut(s)	749
PfoI	TCCNGGA	1 cut(s)	893
PkrI	GCNGC	4 cut(s)	589, 727, 814, 934
PleI	GAGTC	4 cut(s)	328, 678, 740, 899
PpsI	GAGTC	4 cut(s)	328, 678, 740, 899
PpuMI	RGGWCCY	1 cut(s)	346
PscI	ACATGT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	3 cut(s)	99, 893, 1042
PspGI	CCWGG	3 cut(s)	99, 893, 1042
PspN4I	GGNNCC	2 cut(s)	348, 432
PspPI	GGNCC	2 cut(s)	346, 968
PspPPI	RGGWCCY	1 cut(s)	346
PsrI	GAACNNNNNNTAC	2 cut(s)	87, 119
PstI	CTGCAG	2 cut(s)	303, 937
PsyI	GACNNNGTC	1 cut(s)	749
RsaI	GTAC	3 cut(s)	371, 614, 643
RsaNI	GTAC	3 cut(s)	370, 613, 642
SatI	GCNGC	4 cut(s)	588, 726, 813, 933
Sau3AI	GATC	4 cut(s)	87, 397, 465, 982
Sau96I	GGNCC	2 cut(s)	346, 968
SchI	GAGTC	4 cut(s)	328, 679, 740, 899
ScrFI	CCNGG	3 cut(s)	101, 895, 1044
SetI	ASST	8 cut(s)	81, 105, 238, 281, 482, 715, 730, 934
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	590, 889
SfcI	CTRYAG	2 cut(s)	299, 933
SinI	GGWCC	2 cut(s)	346, 968
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	50, 107, 591, 703, 844, 1036
SsiI	CCGC	5 cut(s)	287, 428, 587, 677, 733
StyD4I	CCNGG	3 cut(s)	99, 893, 1042
TaaI	ACNGT	3 cut(s)	583, 688, 901
TaqI	TCGA	4 cut(s)	191, 228, 536, 657
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	6 cut(s)	50, 107, 591, 703, 844, 1036
TatI	WGTACW	3 cut(s)	369, 612, 641
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	2 cut(s)	295, 316
TscAI	CASTG	3 cut(s)	379, 586, 622
TseI	GCWGC	3 cut(s)	725, 812, 932
TspDTI	ATGAA	3 cut(s)	17, 353, 451
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	3 cut(s)	379, 586, 622
Tth111I	GACNNNGTC	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	346, 968
XapI	RAATTY	3 cut(s)	50, 703, 844
XceI	RCATGY	1 cut(s)	184
XmiI	GTMKAC	2 cut(s)	177, 959
Zsp2I	ATGCAT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.