No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G12400 |
| fragaria_vesca | FvH4_1g01880 |
| malus_domestica | MD02G1016700.v1.1 MD15G1161200.v1.1 |
| prunus_persica | Prupe.7G256400_v2.0.a1 |
| pyrus_communis | pycom02g01500 pycom02g01540 pycom15g14490 |
| rosa_chinensis | RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861 |
| rosa_laevigata | RLG00000015810 |
| rosa_multiflora | Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00154080 Rroxscaffold_4G00314220 |
| rosa_rugosa | Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300 |
| rosa_samantha | Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500 |
| rosa_wichuraiana | Rw1G012710 Rw2G001810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 686 |
| Acc36I | ACCTGC | 1 cut(s) | 547 |
| Acc65I | GGTACC | 1 cut(s) | 156 |
| AccB1I | GGYRCC | 2 cut(s) | 156, 511 |
| AccIII | TCCGGA | 1 cut(s) | 71 |
| AciI | CCGC | 4 cut(s) | 60, 122, 626, 841 |
| AclWI | GGATC | 3 cut(s) | 70, 641, 785 |
| AcoI | YGGCCR | 1 cut(s) | 109 |
| AcyI | GRCGYC | 2 cut(s) | 440, 512 |
| AdeI | CACNNNGTG | 1 cut(s) | 1027 |
| AfaI | GTAC | 1 cut(s) | 158 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 118, 656 |
| AgsI | TTSAA | 3 cut(s) | 430, 736, 798 |
| AjnI | CCWGG | 1 cut(s) | 502 |
| AluBI | AGCT | 5 cut(s) | 127, 455, 490, 682, 785 |
| AluI | AGCT | 5 cut(s) | 127, 455, 490, 682, 785 |
| Alw21I | GWGCWC | 1 cut(s) | 1023 |
| Alw26I | GTCTC | 2 cut(s) | 575, 933 |
| AlwI | GGATC | 3 cut(s) | 70, 641, 785 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 788 |
| Ama87I | CYCGRG | 2 cut(s) | 24, 930 |
| Aor13HI | TCCGGA | 1 cut(s) | 71 |
| AoxI | GGCC | 5 cut(s) | 6, 109, 215, 500, 522 |
| ApeKI | GCWGC | 4 cut(s) | 90, 144, 391, 785 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 574, 606 |
| Asp718I | GGTACC | 1 cut(s) | 156 |
| AspLEI | GCGC | 1 cut(s) | 514 |
| AspS9I | GGNCC | 3 cut(s) | 7, 105, 215 |
| AsuHPI | GGTGA | 1 cut(s) | 376 |
| AvaI | CYCGRG | 2 cut(s) | 24, 930 |
| AvaII | GGWCC | 1 cut(s) | 105 |
| AxyI | CCTNAGG | 2 cut(s) | 11, 651 |
| BaeGI | GKGCMC | 1 cut(s) | 198 |
| BanI | GGYRCC | 2 cut(s) | 156, 511 |
| BanII | GRGCYC | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 417 |
| Bbv12I | GWGCWC | 1 cut(s) | 1023 |
| BbvI | GCAGC | 4 cut(s) | 77, 131, 378, 772 |
| BccI | CCATC | 5 cut(s) | 168, 188, 502, 601, 749 |
| BceAI | ACGGC | 3 cut(s) | 97, 157, 937 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 291, 325 |
| BciT130I | CCWGG | 1 cut(s) | 504 |
| BcoDI | GTCTC | 2 cut(s) | 575, 933 |
| BfaI | CTAG | 1 cut(s) | 446 |
| BfmI | CTRYAG | 1 cut(s) | 417 |
| BfoI | RGCGCY | 1 cut(s) | 515 |
| BfuAI | ACCTGC | 1 cut(s) | 547 |
| BisI | GCNGC | 4 cut(s) | 91, 145, 392, 786 |
| BlsI | GCNGC | 4 cut(s) | 92, 146, 393, 787 |
| Bme1390I | CCNGG | 1 cut(s) | 504 |
| Bme18I | GGWCC | 1 cut(s) | 105 |
| BmeT110I | CYCGRG | 2 cut(s) | 24, 930 |
| BmgT120I | GGNCC | 3 cut(s) | 7, 105, 215 |
| BmiI | GGNNCC | 3 cut(s) | 106, 158, 513 |
| BmrFI | CCNGG | 1 cut(s) | 504 |
| BmrI | ACTGGG | 1 cut(s) | 399 |
| BmsI | GCATC | 1 cut(s) | 864 |
| BmuI | ACTGGG | 1 cut(s) | 399 |
| BpiI | GAAGAC | 1 cut(s) | 417 |
| BpmI | CTGGAG | 1 cut(s) | 738 |
| BsaBI | GATNNNNATC | 1 cut(s) | 67 |
| BsaHI | GRCGYC | 2 cut(s) | 440, 512 |
| BsaJI | CCNNGG | 3 cut(s) | 465, 503, 515 |
| BsaWI | WCCGGW | 2 cut(s) | 71, 871 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 118, 656 |
| Bse118I | RCCGGY | 1 cut(s) | 118 |
| Bse1I | ACTGG | 2 cut(s) | 405, 721 |
| Bse21I | CCTNAGG | 2 cut(s) | 11, 651 |
| Bse8I | GATNNNNATC | 1 cut(s) | 67 |
| BseAI | TCCGGA | 1 cut(s) | 71 |
| BseBI | CCWGG | 1 cut(s) | 504 |
| BseDI | CCNNGG | 3 cut(s) | 465, 503, 515 |
| BseGI | GGATG | 2 cut(s) | 258, 513 |
| BseJI | GATNNNNATC | 1 cut(s) | 67 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 118, 656 |
| BseMII | CTCAG | 4 cut(s) | 187, 465, 665, 1008 |
| BseNI | ACTGG | 2 cut(s) | 405, 721 |
| BseRI | GAGGAG | 1 cut(s) | 630 |
| BseSI | GKGCMC | 1 cut(s) | 198 |
| BseXI | GCAGC | 4 cut(s) | 77, 131, 378, 772 |
| BshFI | GGCC | 5 cut(s) | 8, 111, 217, 502, 524 |
| BshNI | GGYRCC | 2 cut(s) | 156, 511 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1023 |
| BsiHKCI | CYCGRG | 2 cut(s) | 24, 930 |
| BsiSI | CCGG | 4 cut(s) | 72, 108, 119, 872 |
| BslFI | GGGAC | 2 cut(s) | 387, 427 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 118, 656 |
| BsmAI | GTCTC | 2 cut(s) | 575, 933 |
| BsmFI | GGGAC | 2 cut(s) | 387, 427 |
| BsmI | GAATGC | 1 cut(s) | 393 |
| BsnI | GGCC | 5 cut(s) | 8, 111, 217, 502, 524 |
| BsoBI | CYCGRG | 2 cut(s) | 24, 930 |
| Bsp1286I | GDGCHC | 3 cut(s) | 31, 198, 1023 |
| Bsp13I | TCCGGA | 1 cut(s) | 71 |
| Bsp143I | GATC | 3 cut(s) | 62, 646, 790 |
| BspACI | CCGC | 4 cut(s) | 60, 122, 626, 841 |
| BspANI | GGCC | 5 cut(s) | 8, 111, 217, 502, 524 |
| BspCNI | CTCAG | 4 cut(s) | 186, 466, 664, 1009 |
| BspEI | TCCGGA | 1 cut(s) | 71 |
| BspLI | GGNNCC | 3 cut(s) | 106, 158, 513 |
| BspMAI | CTGCAG | 1 cut(s) | 421 |
| BspMI | ACCTGC | 1 cut(s) | 547 |
| BspPI | GGATC | 3 cut(s) | 70, 641, 785 |
| BspT107I | GGYRCC | 2 cut(s) | 156, 511 |
| BsrFI | RCCGGY | 1 cut(s) | 118 |
| BsrI | ACTGG | 2 cut(s) | 405, 721 |
| BssAI | RCCGGY | 1 cut(s) | 118 |
| BssECI | CCNNGG | 3 cut(s) | 465, 503, 515 |
| BssMI | GATC | 3 cut(s) | 62, 646, 790 |
| BssNI | GRCGYC | 2 cut(s) | 440, 512 |
| Bst2UI | CCWGG | 1 cut(s) | 504 |
| Bst4CI | ACNGT | 3 cut(s) | 530, 667, 743 |
| Bst6I | CTCTTC | 2 cut(s) | 11, 371 |
| BstACI | GRCGYC | 2 cut(s) | 440, 512 |
| BstC8I | GCNNGC | 3 cut(s) | 120, 554, 841 |
| BstDEI | CTNAG | 5 cut(s) | 11, 173, 474, 651, 1017 |
| BstDSI | CCRYGG | 1 cut(s) | 465 |
| BstF5I | GGATG | 2 cut(s) | 258, 513 |
| BstH2I | RGCGCY | 1 cut(s) | 515 |
| BstHHI | GCGC | 1 cut(s) | 514 |
| BstKTI | GATC | 3 cut(s) | 65, 649, 793 |
| BstMAI | GTCTC | 2 cut(s) | 575, 933 |
| BstMBI | GATC | 3 cut(s) | 62, 646, 790 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 90, 124, 144, 446, 461 |
| BstNI | CCWGG | 1 cut(s) | 504 |
| BstNSI | RCATGY | 1 cut(s) | 556 |
| BstSCI | CCNGG | 1 cut(s) | 502 |
| BstSFI | CTRYAG | 1 cut(s) | 417 |
| BstSLI | GKGCMC | 1 cut(s) | 198 |
| BstV1I | GCAGC | 4 cut(s) | 77, 131, 378, 772 |
| BstV2I | GAAGAC | 1 cut(s) | 417 |
| BstX2I | RGATCY | 1 cut(s) | 62 |
| BstYI | RGATCY | 1 cut(s) | 62 |
| Bsu36I | CCTNAGG | 2 cut(s) | 11, 651 |
| BsuRI | GGCC | 5 cut(s) | 8, 111, 217, 502, 524 |
| BtgI | CCRYGG | 1 cut(s) | 465 |
| BtsCI | GGATG | 2 cut(s) | 258, 513 |
| BtsI | GCAGTG | 1 cut(s) | 426 |
| BtsIMutI | CAGTG | 3 cut(s) | 412, 426, 714 |
| BveI | ACCTGC | 1 cut(s) | 547 |
| Cac8I | GCNNGC | 3 cut(s) | 120, 554, 841 |
| CaiI | CAGNNNCTG | 1 cut(s) | 788 |
| CfoI | GCGC | 1 cut(s) | 514 |
| Cfr10I | RCCGGY | 1 cut(s) | 118 |
| Cfr13I | GGNCC | 3 cut(s) | 7, 105, 215 |
| CseI | GACGC | 1 cut(s) | 429 |
| Csp6I | GTAC | 1 cut(s) | 157 |
| CviAII | CATG | 4 cut(s) | 545, 553, 604, 634 |
| CviQI | GTAC | 1 cut(s) | 157 |
| DdeI | CTNAG | 5 cut(s) | 11, 173, 474, 651, 1017 |
| DinI | GGCGCC | 1 cut(s) | 513 |
| DpnI | GATC | 3 cut(s) | 64, 648, 792 |
| DpnII | GATC | 3 cut(s) | 62, 646, 790 |
| DraIII | CACNNNGTG | 1 cut(s) | 1027 |
| EaeI | YGGCCR | 1 cut(s) | 109 |
| Eam1104I | CTCTTC | 2 cut(s) | 11, 371 |
| EarI | CTCTTC | 2 cut(s) | 11, 371 |
| EciI | GGCGGA | 2 cut(s) | 137, 615 |
| Eco147I | AGGCCT | 1 cut(s) | 502 |
| Eco24I | GRGCYC | 1 cut(s) | 31 |
| Eco47I | GGWCC | 1 cut(s) | 105 |
| Eco81I | CCTNAGG | 2 cut(s) | 11, 651 |
| Eco88I | CYCGRG | 2 cut(s) | 24, 930 |
| EcoRII | CCWGG | 1 cut(s) | 502 |
| EcoT22I | ATGCAT | 1 cut(s) | 997 |
| EcoT38I | GRGCYC | 1 cut(s) | 31 |
| EgeI | GGCGCC | 1 cut(s) | 513 |
| EheI | GGCGCC | 1 cut(s) | 513 |
| FaeI | CATG | 4 cut(s) | 548, 556, 607, 637 |
| FaqI | GGGAC | 2 cut(s) | 387, 427 |
| FatI | CATG | 4 cut(s) | 544, 552, 603, 633 |
| FauI | CCCGC | 1 cut(s) | 848 |
| FauNDI | CATATG | 1 cut(s) | 997 |
| Fnu4HI | GCNGC | 4 cut(s) | 91, 145, 392, 786 |
| FokI | GGATG | 2 cut(s) | 245, 520 |
| FriOI | GRGCYC | 1 cut(s) | 31 |
| Fsp4HI | GCNGC | 4 cut(s) | 91, 145, 392, 786 |
| FspBI | CTAG | 1 cut(s) | 446 |
| GlaI | GCGC | 1 cut(s) | 513 |
| GluI | GCNGC | 4 cut(s) | 91, 145, 392, 786 |
| GsuI | CTGGAG | 1 cut(s) | 738 |
| HaeII | RGCGCY | 1 cut(s) | 515 |
| HaeIII | GGCC | 5 cut(s) | 8, 111, 217, 502, 524 |
| HapII | CCGG | 4 cut(s) | 72, 108, 119, 872 |
| HgaI | GACGC | 1 cut(s) | 429 |
| HhaI | GCGC | 1 cut(s) | 514 |
| Hin1I | GRCGYC | 2 cut(s) | 440, 512 |
| Hin1II | CATG | 4 cut(s) | 548, 556, 607, 637 |
| Hin6I | GCGC | 1 cut(s) | 512 |
| HinP1I | GCGC | 1 cut(s) | 512 |
| HincII | GTYRAC | 2 cut(s) | 277, 919 |
| HindII | GTYRAC | 2 cut(s) | 277, 919 |
| HindIII | AAGCTT | 2 cut(s) | 488, 680 |
| HinfI | GANTC | 3 cut(s) | 68, 289, 926 |
| HpaII | CCGG | 4 cut(s) | 72, 108, 119, 872 |
| HphI | GGTGA | 1 cut(s) | 376 |
| Hpy166II | GTNNAC | 3 cut(s) | 277, 663, 919 |
| Hpy188I | TCNGA | 5 cut(s) | 67, 176, 288, 294, 313 |
| Hpy188III | TCNNGA | 5 cut(s) | 72, 262, 533, 653, 818 |
| Hpy8I | GTNNAC | 3 cut(s) | 277, 663, 919 |
| Hpy99I | CGWCG | 2 cut(s) | 83, 143 |
| HpyAV | CCTTC | 3 cut(s) | 375, 804, 869 |
| HpyCH4III | ACNGT | 3 cut(s) | 530, 667, 743 |
| HpyCH4V | TGCA | 4 cut(s) | 419, 556, 597, 995 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 90, 124, 144, 446, 461 |
| HpyF3I | CTNAG | 5 cut(s) | 11, 173, 474, 651, 1017 |
| Hsp92I | GRCGYC | 2 cut(s) | 440, 512 |
| Hsp92II | CATG | 4 cut(s) | 548, 556, 607, 637 |
| HspAI | GCGC | 1 cut(s) | 512 |
| KasI | GGCGCC | 1 cut(s) | 511 |
| Kpn2I | TCCGGA | 1 cut(s) | 71 |
| KpnI | GGTACC | 1 cut(s) | 160 |
| KroI | GCCGGC | 1 cut(s) | 118 |
| KroNI | GCCGGC | 1 cut(s) | 120 |
| Kzo9I | GATC | 3 cut(s) | 62, 646, 790 |
| LmnI | GCTCC | 1 cut(s) | 124 |
| Lsp1109I | GCAGC | 4 cut(s) | 77, 131, 378, 772 |
| LweI | GCATC | 1 cut(s) | 864 |
| MaeI | CTAG | 1 cut(s) | 446 |
| MalI | GATC | 3 cut(s) | 64, 648, 792 |
| MboI | GATC | 3 cut(s) | 62, 646, 790 |
| MboII | GAAGA | 9 cut(s) | 28, 122, 247, 328, 385, 388, 422, 584, 748 |
| MflI | RGATCY | 1 cut(s) | 62 |
| MhlI | GDGCHC | 3 cut(s) | 31, 198, 1023 |
| Mly113I | GGCGCC | 1 cut(s) | 512 |
| MlyI | GAGTC | 1 cut(s) | 935 |
| Mph1103I | ATGCAT | 1 cut(s) | 997 |
| MreI | CGCCGGCG | 1 cut(s) | 118 |
| MroI | TCCGGA | 1 cut(s) | 71 |
| MroNI | GCCGGC | 1 cut(s) | 118 |
| MseI | TTAA | 2 cut(s) | 189, 587 |
| MspA1I | CMGCKG | 2 cut(s) | 60, 785 |
| MspI | CCGG | 4 cut(s) | 72, 108, 119, 872 |
| MspR9I | CCNGG | 1 cut(s) | 504 |
| Mva1269I | GAATGC | 1 cut(s) | 393 |
| MvaI | CCWGG | 1 cut(s) | 504 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 90, 124, 144, 446, 461 |
| NaeI | GCCGGC | 1 cut(s) | 120 |
| NarI | GGCGCC | 1 cut(s) | 512 |
| NdeI | CATATG | 1 cut(s) | 997 |
| NdeII | GATC | 3 cut(s) | 62, 646, 790 |
| NgoMIV | GCCGGC | 1 cut(s) | 118 |
| NlaIII | CATG | 4 cut(s) | 548, 556, 607, 637 |
| NlaIV | GGNNCC | 3 cut(s) | 106, 158, 513 |
| NmeAIII | GCCGAG | 1 cut(s) | 540 |
| NsiI | ATGCAT | 1 cut(s) | 997 |
| NspI | RCATGY | 1 cut(s) | 556 |
| PaeI | GCATGC | 1 cut(s) | 556 |
| PceI | AGGCCT | 1 cut(s) | 502 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 340 |
| PctI | GAATGC | 1 cut(s) | 393 |
| PdiI | GCCGGC | 1 cut(s) | 120 |
| PfeI | GAWTC | 2 cut(s) | 68, 289 |
| PkrI | GCNGC | 4 cut(s) | 92, 146, 393, 787 |
| PleI | GAGTC | 1 cut(s) | 934 |
| PluTI | GGCGCC | 1 cut(s) | 515 |
| PpsI | GAGTC | 1 cut(s) | 934 |
| PsiI | TTATAA | 1 cut(s) | 686 |
| Psp6I | CCWGG | 1 cut(s) | 502 |
| PspGI | CCWGG | 1 cut(s) | 502 |
| PspN4I | GGNNCC | 3 cut(s) | 106, 158, 513 |
| PspPI | GGNCC | 3 cut(s) | 7, 105, 215 |
| PstI | CTGCAG | 1 cut(s) | 421 |
| PstNI | CAGNNNCTG | 1 cut(s) | 788 |
| PsuI | RGATCY | 1 cut(s) | 62 |
| PvuII | CAGCTG | 1 cut(s) | 785 |
| RsaI | GTAC | 1 cut(s) | 158 |
| RsaNI | GTAC | 1 cut(s) | 157 |
| SaqAI | TTAA | 2 cut(s) | 189, 587 |
| SatI | GCNGC | 4 cut(s) | 91, 145, 392, 786 |
| Sau3AI | GATC | 3 cut(s) | 62, 646, 790 |
| Sau96I | GGNCC | 3 cut(s) | 7, 105, 215 |
| SchI | GAGTC | 1 cut(s) | 935 |
| ScrFI | CCNGG | 1 cut(s) | 504 |
| SduI | GDGCHC | 3 cut(s) | 31, 198, 1023 |
| SetI | ASST | 7 cut(s) | 129, 457, 492, 561, 684, 787, 897 |
| SfaNI | GCATC | 1 cut(s) | 864 |
| SfcI | CTRYAG | 1 cut(s) | 417 |
| SfoI | GGCGCC | 1 cut(s) | 513 |
| SgrAI | CRCCGGYG | 1 cut(s) | 118 |
| SinI | GGWCC | 1 cut(s) | 105 |
| SphI | GCATGC | 1 cut(s) | 556 |
| SseBI | AGGCCT | 1 cut(s) | 502 |
| SsiI | CCGC | 4 cut(s) | 60, 122, 626, 841 |
| SspDI | GGCGCC | 1 cut(s) | 511 |
| SspI | AATATT | 1 cut(s) | 835 |
| SspMI | CTAG | 1 cut(s) | 446 |
| StuI | AGGCCT | 1 cut(s) | 502 |
| StyD4I | CCNGG | 1 cut(s) | 502 |
| TaaI | ACNGT | 3 cut(s) | 530, 667, 743 |
| TaqI | TCGA | 3 cut(s) | 51, 334, 371 |
| TfiI | GAWTC | 2 cut(s) | 68, 289 |
| Tru1I | TTAA | 2 cut(s) | 189, 587 |
| Tru9I | TTAA | 2 cut(s) | 189, 587 |
| TscAI | CASTG | 3 cut(s) | 412, 426, 721 |
| TseI | GCWGC | 4 cut(s) | 90, 144, 391, 785 |
| TspDTI | ATGAA | 3 cut(s) | 335, 555, 1020 |
| TspRI | CASTG | 3 cut(s) | 412, 426, 721 |
| VpaK11BI | GGWCC | 1 cut(s) | 105 |
| XceI | RCATGY | 1 cut(s) | 556 |
| XspI | CTAG | 1 cut(s) | 446 |
| Zsp2I | ATGCAT | 1 cut(s) | 997 |