Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003755

Physical Location & Seq

Genomic Coordinates Forward (+)

33488820 .. 33489634

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG162900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATGAATGGGTCCAGCACCCCACTGCCCGTACTACTTTAGATGATCTACTCCCTTGTGTGGACAATGCTACTGCTCAAGAGACTTCATCATGCACCAAGGATACAACCTACAAACTTGTGAGCATGGTAGACAAGGTCATCAACAATATCTCAAATCTTAACAATCCACCACCCCAACTTGGACCGTTATATTTCAATCAGTCTGGCCCTCTATTACCTGTTCTTTGCAACCCATACAACACCGATCTCACTGATCGCAAGTGTGCCTCTGGTGAGGTGGGACTGCAGAATGCCACACAGGTGTGGAAGAGTTATGTGTGTAAGGTTAATACGGCAGGCATCTGTATAACTCCTGGACGGTTGACTCCCATCTTCTACGACCAAATGGAAGCTGCAGTAAATGTGAGTTATGGTCTGTATACTTATGGTCCATTCTTGGTTGATCTGCAAGACTGCACATTTGTCAGGGACACATTCACCGACATAAGTAATAGGAATTGTCCTGGCCTTCGAAAACATAGCATCTGGATCTACATTGGGCTGGTAATGGTATCTGCAGCAGTCATGTTATCGTTGATCTTTTGGGTAAATCTACGCAAGGGAACGAAGGCACCGCGTGTACACCAAGCAGTTTATGGCTGGAGGTGGAGGAACAGGGGGATTCCAAGTCCAAGACAAGGGTGCTTAGAGATTTCCATTACTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

26.44

Weight (kDa)

8.55

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12400
fragaria_vesca	FvH4_1g01880
malus_domestica	MD02G1016700.v1.1 MD15G1161200.v1.1
prunus_persica	Prupe.7G256400_v2.0.a1
pyrus_communis	pycom02g01500 pycom02g01540 pycom15g14490
rosa_chinensis	RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861
rosa_laevigata	RLG00000015810
rosa_multiflora	Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154080 Rroxscaffold_4G00314220
rosa_rugosa	Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300
rosa_samantha	Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500
rosa_wichuraiana	Rw1G012710 Rw2G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	613
AccI	GTMKAC	2 cut(s)	132, 422
AccII	CGCG	1 cut(s)	619
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	1 cut(s)	539
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	34, 624
AfiI	CCNNNNNNNGG	3 cut(s)	61, 182, 680
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	355, 505
AleI	CACNNNNGTG	2 cut(s)	302, 304
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	2 cut(s)	208, 508
ApeKI	GCWGC	2 cut(s)	395, 560
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AspS9I	GGNCC	4 cut(s)	13, 185, 209, 431
AsuHPI	GGTGA	2 cut(s)	287, 472
AsuII	TTCGAA	1 cut(s)	514
AvaII	GGWCC	3 cut(s)	13, 185, 431
BanI	GGYRCC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	382, 572
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	2 cut(s)	357, 507
BciVI	GTATCC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	77
BfmI	CTRYAG	3 cut(s)	287, 396, 558
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	396, 561
BlsI	GCNGC	2 cut(s)	397, 562
Bme1390I	CCNGG	2 cut(s)	357, 507
Bme18I	GGWCC	3 cut(s)	13, 185, 431
BmgT120I	GGNCC	4 cut(s)	13, 185, 209, 431
BmiI	GGNNCC	2 cut(s)	14, 615
BmrFI	CCNGG	2 cut(s)	357, 507
BmsI	GCATC	2 cut(s)	351, 534
BpmI	CTGGAG	1 cut(s)	664
Bpu14I	TTCGAA	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 182, 680
BseBI	CCWGG	2 cut(s)	357, 507
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	61, 182, 680
BseXI	GCAGC	2 cut(s)	382, 572
BsgI	GTGCAG	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	619
BshFI	GGCC	2 cut(s)	210, 510
BshNI	GGYRCC	1 cut(s)	613
BslFI	GGGAC	2 cut(s)	297, 485
BslI	CCNNNNNNNGG	3 cut(s)	61, 182, 680
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	297, 485
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	210, 510
Bsp119I	TTCGAA	1 cut(s)	514
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	6 cut(s)	46, 247, 256, 445, 531, 579
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	2 cut(s)	210, 510
BspFNI	CGCG	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	14, 615
BspMAI	CTGCAG	3 cut(s)	291, 400, 562
BspPI	GGATC	1 cut(s)	539
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	6 cut(s)	46, 247, 256, 445, 531, 579
BssNAI	GTATAC	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	99
Bst1107I	GTATAC	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	357, 507
Bst4CI	ACNGT	2 cut(s)	189, 363
Bst6I	CTCTTC	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	622
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	688, 705
BstFNI	CGCG	1 cut(s)	619
BstKTI	GATC	6 cut(s)	49, 250, 259, 448, 534, 582
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	6 cut(s)	46, 247, 256, 445, 531, 579
BstNI	CCWGG	2 cut(s)	357, 507
BstSCI	CCNGG	2 cut(s)	355, 505
BstSFI	CTRYAG	3 cut(s)	287, 396, 558
BstUI	CGCG	1 cut(s)	619
BstV1I	GCAGC	2 cut(s)	382, 572
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BstZ17I	GTATAC	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	210, 510
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 252
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	4 cut(s)	13, 185, 209, 431
Csp6I	GTAC	2 cut(s)	33, 623
CviAII	CATG	3 cut(s)	93, 127, 568
CviJI	RGCY	5 cut(s)	210, 395, 510, 544, 642
CviKI_1	RGCY	5 cut(s)	210, 395, 510, 544, 642
CviQI	GTAC	2 cut(s)	33, 623
DdeI	CTNAG	2 cut(s)	688, 705
DpnI	GATC	6 cut(s)	48, 249, 258, 447, 533, 581
DpnII	GATC	6 cut(s)	46, 247, 256, 445, 531, 579
DraIII	CACNNNGTG	1 cut(s)	620
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	3 cut(s)	13, 185, 431
EcoRII	CCWGG	2 cut(s)	355, 505
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	3 cut(s)	96, 130, 571
FaqI	GGGAC	2 cut(s)	297, 485
FatI	CATG	3 cut(s)	92, 126, 567
FblI	GTMKAC	2 cut(s)	132, 422
Fnu4HI	GCNGC	2 cut(s)	396, 561
Fsp4HI	GCNGC	2 cut(s)	396, 561
GluI	GCNGC	2 cut(s)	396, 561
GsuI	CTGGAG	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	210, 510
Hin1II	CATG	3 cut(s)	96, 130, 571
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	2 cut(s)	367, 664
HphI	GGTGA	2 cut(s)	287, 472
Hpy166II	GTNNAC	6 cut(s)	64, 133, 366, 423, 623, 625
Hpy188III	TCNNGA	2 cut(s)	80, 529
Hpy8I	GTNNAC	6 cut(s)	64, 133, 366, 423, 623, 625
HpyAV	CCTTC	2 cut(s)	521, 604
HpyCH4III	ACNGT	2 cut(s)	189, 363
HpyCH4V	TGCA	7 cut(s)	96, 231, 289, 398, 451, 459, 560
HpyF3I	CTNAG	2 cut(s)	688, 705
Hsp92II	CATG	3 cut(s)	96, 130, 571
Kzo9I	GATC	6 cut(s)	46, 247, 256, 445, 531, 579
Lsp1109I	GCAGC	2 cut(s)	382, 572
LweI	GCATC	2 cut(s)	351, 534
MalI	GATC	6 cut(s)	48, 249, 258, 447, 533, 581
MboI	GATC	6 cut(s)	46, 247, 256, 445, 531, 579
MboII	GAAGA	2 cut(s)	322, 367
MflI	RGATCY	1 cut(s)	531
MluCI	AATT	1 cut(s)	499
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	5 cut(s)	222, 271, 280, 639, 645
MseI	TTAA	2 cut(s)	162, 330
MslI	CAYNNNNRTG	2 cut(s)	302, 304
MspR9I	CCNGG	2 cut(s)	357, 507
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	2 cut(s)	357, 507
MvnI	CGCG	1 cut(s)	619
NdeII	GATC	6 cut(s)	46, 247, 256, 445, 531, 579
NlaIII	CATG	3 cut(s)	96, 130, 571
NlaIV	GGNNCC	2 cut(s)	14, 615
NspV	TTCGAA	1 cut(s)	514
OliI	CACNNNNGTG	2 cut(s)	302, 304
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	664
PflFI	GACNNNGTC	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	397, 562
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	355, 505
PspGI	CCWGG	2 cut(s)	355, 505
PspN4I	GGNNCC	2 cut(s)	14, 615
PspPI	GGNCC	4 cut(s)	13, 185, 209, 431
PstI	CTGCAG	3 cut(s)	291, 400, 562
PsuI	RGATCY	1 cut(s)	531
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	2 cut(s)	34, 624
RsaNI	GTAC	2 cut(s)	33, 623
RseI	CAYNNNNRTG	2 cut(s)	302, 304
SaqAI	TTAA	2 cut(s)	162, 330
SatI	GCNGC	2 cut(s)	396, 561
Sau3AI	GATC	6 cut(s)	46, 247, 256, 445, 531, 579
Sau96I	GGNCC	4 cut(s)	13, 185, 209, 431
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	357, 507
SetI	ASST	8 cut(s)	113, 141, 223, 282, 306, 330, 397, 650
SfaNI	GCATC	2 cut(s)	351, 534
SfcI	CTRYAG	3 cut(s)	287, 396, 558
SfuI	TTCGAA	1 cut(s)	514
SinI	GGWCC	3 cut(s)	13, 185, 431
SmiMI	CAYNNNNRTG	2 cut(s)	302, 304
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	499
SsiI	CCGC	1 cut(s)	617
StyD4I	CCNGG	2 cut(s)	355, 505
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	189, 363
TaqI	TCGA	1 cut(s)	514
TasI	AATT	1 cut(s)	499
TatI	WGTACW	1 cut(s)	622
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	2 cut(s)	162, 330
Tru9I	TTAA	2 cut(s)	162, 330
TscAI	CASTG	2 cut(s)	31, 259
TseI	GCWGC	2 cut(s)	395, 560
TspDTI	ATGAA	3 cut(s)	17, 21, 78
TspRI	CASTG	2 cut(s)	31, 259
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	3 cut(s)	13, 185, 431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XmiI	GTMKAC	2 cut(s)	132, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.