RchiOBHm_Chr1g0337751

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
29658862 .. 29662797
3936 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56563

Sequence Viewer

Length: 1383 bp
ATGACAATGGATACAAGAAGGTCTCTTGCGGATGAGAATCTGCAGAACTCGTCTCTGGTTCTGGCGAAGGAGAGGACTCGCAGGAAGGACCCTCTTGATGATTTTCATAAGTACACTGGTGGATGGAATATCAGCAATGATCATTACTGGGCTTCTGTTGCTTGGACTGCGGTTCCCTTCTTTCTCATTGCTGGTCTGTGGTTCGTGATCTTTGGGCTAAGCTTGACACTTATTTGTTTCTGTTACTGCTGTTGCCCAAGACAGCCTTATGGTTATTCGAGAACAGCCTGTGCTCTCTCTCTCATCTTCCTTATCTTCTTCACTGTCGCGGCAATTGTTGGATGCGTTGTTCTGTACACTGGTCAGGCAAAGTTTCACAGCAGTACAACAAGGACACTCGATTATGTCGTGAGTCAGGCGGATTCAACTATTGAAAGCCTCCGGAATTTGTCAGGTTATCTTGGTGCAGCTAAGCGGACTGGAGTTGACTCCGTCTTTCTGCCATCAGATGTTCAGAGTAACATTGACACGACTATAACGAAACTCAACTCTGCTGCCTCTAAACTTTCTAATACAACTGAAAAGAATTCAAATCGTATAGATGATGGATTGGATAGCGTAAGACTGGCTCTCCTTGTCCTTGCTGCTGTTATGCTCTGTTTGGCCTTTCTTGGATTTTGTAATGTGGTTGCAGATGCATGTGTTTCCATGGATGAATGGGTCCAGCACCCCACTGCCCGTACTGCTTTAGATGATCTACTCCCTTGTGTGGACAATGCTACTGCTCAAGAGACTTCATCACGCACCAAGGATACAACCTACAAACTTGTGAGCATGGTAGACAAGGTCATCAACAATATCTCAAATCTTAACAATCCACCACCCCAACTTGGACCGTTATATTTCAATCAGTCTGGCCCTCTATTACCTGTTCTTTGCAACCCATACAACACCGATCTCACTGATCACAAGTGTGCCTCTGGTGAGGTGGGACTGCAGAATGCCACACAGTTATGTAAGGTTAATACGGCAGGCATCTGTATAACTCCTGGACGGTTGACTCCCATCTTCTACGGCCAAATGGAAGCTGCAGTAAATGTGAGTTATGGTCTGTATACTTATGGTCCATTCTTGGTTGATCTGCAAGACTGCACATTTGTCAGGGACACATTCACCGACATAAGTAATAGGAATTGTCCTGGCCTTCGAAAACATAGCAGCTGGATCTACATTGGGCTGGTAATGGTATCTGCAGCAGTCATGTTATCGTTGATCTTTTGGGTAATCTACGCAAGGGAACGAAGGCACCGCGTGTACACCAAGCAGTTTATGGCTGGAGGTGGAGGAACAGGGGGATTCCGAGTCCAAGACAAGGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

50.66

Weight (kDa)

7.81

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1305
AccI GTMKAC 2 cut(s) 840, 1115
AccII CGCG 2 cut(s) 329, 1311
AccIII TCCGGA 1 cut(s) 441
AciI CCGC 6 cut(s) 29, 170, 329, 419, 475, 1309
AclWI GGATC 1 cut(s) 1232
AcoI YGGCCR 1 cut(s) 1075
AcsI RAATTY 2 cut(s) 445, 586
AdeI CACNNNGTG 1 cut(s) 1312
AfaI GTAC 5 cut(s) 113, 356, 385, 742, 1316
AfiI CCNNNNNNNGG 3 cut(s) 769, 890, 1372
AgsI TTSAA 4 cut(s) 426, 434, 591, 907
AjnI CCWGG 2 cut(s) 1048, 1198
AleI CACNNNNGTG 1 cut(s) 972
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 4 cut(s) 222, 470, 1088, 1221
AluI AGCT 4 cut(s) 222, 470, 1088, 1221
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 3 cut(s) 27, 57, 785
AlwI GGATC 1 cut(s) 1232
Aor13HI TCCGGA 1 cut(s) 441
AoxI GGCC 4 cut(s) 663, 916, 1075, 1201
ApeKI GCWGC 6 cut(s) 467, 554, 644, 1088, 1218, 1253
ApoI RAATTY 2 cut(s) 445, 586
ArsI GACNNNNNNTTYG 2 cut(s) 1139, 1171
AspS9I GGNCC 5 cut(s) 88, 721, 893, 917, 1124
AsuHPI GGTGA 2 cut(s) 995, 1165
AsuII TTCGAA 1 cut(s) 1207
AvaII GGWCC 4 cut(s) 88, 721, 893, 1124
BanI GGYRCC 1 cut(s) 1305
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 6 cut(s) 479, 541, 631, 1075, 1230, 1265
BccI CCATC 4 cut(s) 117, 511, 599, 1073
BceAI ACGGC 2 cut(s) 1044, 1090
BciT130I CCWGG 2 cut(s) 1050, 1200
BciVI GTATCC 2 cut(s) 4, 805
BclI TGATCA 2 cut(s) 139, 964
BcoDI GTCTC 3 cut(s) 27, 57, 785
BfmI CTRYAG 4 cut(s) 41, 995, 1089, 1251
BfuI GTATCC 2 cut(s) 4, 805
BisI GCNGC 7 cut(s) 330, 468, 555, 645, 1089, 1219, 1254
BlpI GCTNAGC 2 cut(s) 218, 471
BlsI GCNGC 7 cut(s) 331, 469, 556, 646, 1090, 1220, 1255
Bme1390I CCNGG 2 cut(s) 1050, 1200
Bme18I GGWCC 4 cut(s) 88, 721, 893, 1124
BmgT120I GGNCC 5 cut(s) 88, 721, 893, 917, 1124
BmiI GGNNCC 4 cut(s) 90, 174, 722, 1307
BmrFI CCNGG 2 cut(s) 1050, 1200
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 3 cut(s) 332, 685, 1044
BmuI ACTGGG 1 cut(s) 157
BpmI CTGGAG 2 cut(s) 501, 1356
Bpu1102I GCTNAGC 2 cut(s) 218, 471
Bpu14I TTCGAA 1 cut(s) 1207
BpuEI CTTGAG 1 cut(s) 771
BsaBI GATNNNNATC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 708, 807
BsaWI WCCGGW 1 cut(s) 441
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 3 cut(s) 769, 890, 1372
Bse1I ACTGG 5 cut(s) 121, 152, 364, 484, 630
Bse3DI GCAATG 2 cut(s) 142, 186
Bse8I GATNNNNATC 1 cut(s) 36
BseAI TCCGGA 1 cut(s) 441
BseBI CCWGG 2 cut(s) 1050, 1200
BseDI CCNNGG 2 cut(s) 708, 807
BseGI GGATG 4 cut(s) 37, 128, 347, 718
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 3 cut(s) 769, 890, 1372
BseMI GCAATG 2 cut(s) 142, 186
BseNI ACTGG 5 cut(s) 121, 152, 364, 484, 630
BseXI GCAGC 6 cut(s) 479, 541, 631, 1075, 1230, 1265
BsgI GTGCAG 2 cut(s) 486, 1135
Bsh1236I CGCG 2 cut(s) 329, 1311
BshFI GGCC 4 cut(s) 665, 918, 1077, 1203
BshNI GGYRCC 1 cut(s) 1305
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 442
BslFI GGGAC 2 cut(s) 1005, 1178
BslI CCNNNNNNNGG 3 cut(s) 769, 890, 1372
BsmAI GTCTC 3 cut(s) 27, 57, 785
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 1005, 1178
BsmI GAATGC 1 cut(s) 1006
BsnI GGCC 4 cut(s) 665, 918, 1077, 1203
Bso31I GGTCTC 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 1207
Bsp1286I GDGCHC 1 cut(s) 295
Bsp13I TCCGGA 1 cut(s) 441
Bsp1407I TGTACA 2 cut(s) 354, 1314
Bsp143I GATC 8 cut(s) 139, 207, 754, 955, 964, 1138, 1224, 1272
Bsp1720I GCTNAGC 2 cut(s) 218, 471
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 6 cut(s) 29, 170, 329, 419, 475, 1309
BspANI GGCC 4 cut(s) 665, 918, 1077, 1203
BspEI TCCGGA 1 cut(s) 441
BspFNI CGCG 2 cut(s) 329, 1311
BspLI GGNNCC 4 cut(s) 90, 174, 722, 1307
BspMAI CTGCAG 4 cut(s) 45, 999, 1093, 1255
BspPI GGATC 1 cut(s) 1232
BspT104I TTCGAA 1 cut(s) 1207
BspT107I GGYRCC 1 cut(s) 1305
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 2 cut(s) 142, 186
BsrGI TGTACA 2 cut(s) 354, 1314
BsrI ACTGG 5 cut(s) 121, 152, 364, 484, 630
BssECI CCNNGG 2 cut(s) 708, 807
BssMI GATC 8 cut(s) 139, 207, 754, 955, 964, 1138, 1224, 1272
BssNAI GTATAC 1 cut(s) 1116
BssT1I CCWWGG 2 cut(s) 708, 807
Bst1107I GTATAC 1 cut(s) 1116
Bst2UI CCWGG 2 cut(s) 1050, 1200
Bst4CI ACNGT 4 cut(s) 325, 897, 1011, 1056
BstAUI TGTACA 2 cut(s) 354, 1314
BstBI TTCGAA 1 cut(s) 1207
BstC8I GCNNGC 1 cut(s) 1033
BstDEI CTNAG 3 cut(s) 218, 471, 1380
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 4 cut(s) 37, 128, 347, 718
BstFNI CGCG 2 cut(s) 329, 1311
BstKTI GATC 8 cut(s) 142, 210, 757, 958, 967, 1141, 1227, 1275
BstMAI GTCTC 3 cut(s) 27, 57, 785
BstMBI GATC 8 cut(s) 139, 207, 754, 955, 964, 1138, 1224, 1272
BstMWI GCNNNNNNNGC 3 cut(s) 158, 167, 743
BstNI CCWGG 2 cut(s) 1050, 1200
BstNSI RCATGY 1 cut(s) 702
BstSCI CCNGG 2 cut(s) 1048, 1198
BstSFI CTRYAG 4 cut(s) 41, 995, 1089, 1251
BstUI CGCG 2 cut(s) 329, 1311
BstV1I GCAGC 6 cut(s) 479, 541, 631, 1075, 1230, 1265
BstX2I RGATCY 1 cut(s) 1224
BstYI RGATCY 1 cut(s) 1224
BstZ17I GTATAC 1 cut(s) 1116
BsuI GTATCC 2 cut(s) 4, 805
BsuRI GGCC 4 cut(s) 665, 918, 1077, 1203
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 4 cut(s) 37, 128, 347, 718
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 5 cut(s) 114, 321, 357, 732, 960
Cac8I GCNNGC 1 cut(s) 1033
Cfr13I GGNCC 5 cut(s) 88, 721, 893, 917, 1124
Csp6I GTAC 5 cut(s) 112, 355, 384, 741, 1315
CviAII CATG 4 cut(s) 699, 709, 835, 1261
CviQI GTAC 5 cut(s) 112, 355, 384, 741, 1315
DdeI CTNAG 3 cut(s) 218, 471, 1380
DpnI GATC 8 cut(s) 141, 209, 756, 957, 966, 1140, 1226, 1274
DpnII GATC 8 cut(s) 139, 207, 754, 955, 964, 1138, 1224, 1272
DraIII CACNNNGTG 1 cut(s) 1312
EaeI YGGCCR 1 cut(s) 1075
EciI GGCGGA 1 cut(s) 434
Eco130I CCWWGG 2 cut(s) 708, 807
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 4 cut(s) 88, 721, 893, 1124
EcoO109I RGGNCCY 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 2 cut(s) 1048, 1198
EcoT14I CCWWGG 2 cut(s) 708, 807
EcoT22I ATGCAT 1 cut(s) 700
ErhI CCWWGG 2 cut(s) 708, 807
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 4 cut(s) 702, 712, 838, 1264
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FaqI GGGAC 2 cut(s) 1005, 1178
FatI CATG 4 cut(s) 698, 708, 834, 1260
FbaI TGATCA 2 cut(s) 139, 964
FblI GTMKAC 2 cut(s) 840, 1115
Fnu4HI GCNGC 7 cut(s) 330, 468, 555, 645, 1089, 1219, 1254
FokI GGATG 4 cut(s) 44, 135, 354, 725
Fsp4HI GCNGC 7 cut(s) 330, 468, 555, 645, 1089, 1219, 1254
GluI GCNGC 7 cut(s) 330, 468, 555, 645, 1089, 1219, 1254
GsuI CTGGAG 2 cut(s) 501, 1356
HaeIII GGCC 4 cut(s) 665, 918, 1077, 1203
HapII CCGG 1 cut(s) 442
Hin1II CATG 4 cut(s) 702, 712, 838, 1264
HincII GTYRAC 2 cut(s) 487, 1059
HindII GTYRAC 2 cut(s) 487, 1059
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 8 cut(s) 37, 76, 412, 422, 488, 1060, 1356, 1362
HpaII CCGG 1 cut(s) 442
HphI GGTGA 2 cut(s) 995, 1165
Hpy166II GTNNAC 9 cut(s) 114, 357, 487, 772, 841, 1059, 1116, 1315, 1317
Hpy188I TCNGA 3 cut(s) 508, 516, 1361
Hpy188III TCNNGA 6 cut(s) 95, 205, 279, 409, 442, 788
Hpy8I GTNNAC 9 cut(s) 114, 357, 487, 772, 841, 1059, 1116, 1315, 1317
HpyAV CCTTC 6 cut(s) 12, 61, 79, 187, 1214, 1296
HpyCH4III ACNGT 4 cut(s) 325, 897, 1011, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 167, 743
HpyF3I CTNAG 3 cut(s) 218, 471, 1380
Hsp92II CATG 4 cut(s) 702, 712, 838, 1264
Kpn2I TCCGGA 1 cut(s) 441
Ksp22I TGATCA 2 cut(s) 139, 964
Kzo9I GATC 8 cut(s) 139, 207, 754, 955, 964, 1138, 1224, 1272
Lsp1109I GCAGC 6 cut(s) 479, 541, 631, 1075, 1230, 1265
LweI GCATC 3 cut(s) 332, 685, 1044
MaeIII GTNAC 2 cut(s) 242, 518
MalI GATC 8 cut(s) 141, 209, 756, 957, 966, 1140, 1226, 1274
MboI GATC 8 cut(s) 139, 207, 754, 955, 964, 1138, 1224, 1272
MboII GAAGA 4 cut(s) 298, 307, 310, 1060
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 1224
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 4 cut(s) 333, 445, 586, 1192
MlyI GAGTC 5 cut(s) 70, 421, 482, 1054, 1371
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 9 cut(s) 66, 102, 449, 568, 930, 979, 988, 1331, 1337
Mph1103I ATGCAT 1 cut(s) 700
MroI TCCGGA 1 cut(s) 441
MseI TTAA 2 cut(s) 870, 1023
MslI CAYNNNNRTG 2 cut(s) 972, 1012
MspA1I CMGCKG 1 cut(s) 1221
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 2 cut(s) 1050, 1200
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 1006
MvaI CCWGG 2 cut(s) 1050, 1200
MvnI CGCG 2 cut(s) 329, 1311
MwoI GCNNNNNNNGC 3 cut(s) 158, 167, 743
NcoI CCATGG 1 cut(s) 708
NdeII GATC 8 cut(s) 139, 207, 754, 955, 964, 1138, 1224, 1272
NlaIII CATG 4 cut(s) 702, 712, 838, 1264
NlaIV GGNNCC 4 cut(s) 90, 174, 722, 1307
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 1 cut(s) 702
NspV TTCGAA 1 cut(s) 1207
OliI CACNNNNGTG 1 cut(s) 972
PcsI WCGNNNNNNNCGW 2 cut(s) 405, 536
PctI GAATGC 1 cut(s) 1006
PfeI GAWTC 3 cut(s) 37, 422, 1356
PflFI GACNNNGTC 2 cut(s) 491, 845
PfoI TCCNGGA 1 cut(s) 1048
PkrI GCNGC 7 cut(s) 331, 469, 556, 646, 1090, 1220, 1255
PleI GAGTC 5 cut(s) 70, 420, 482, 1054, 1370
PpsI GAGTC 5 cut(s) 70, 420, 482, 1054, 1370
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 1048, 1198
PspGI CCWGG 2 cut(s) 1048, 1198
PspN4I GGNNCC 4 cut(s) 90, 174, 722, 1307
PspPI GGNCC 5 cut(s) 88, 721, 893, 917, 1124
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 4 cut(s) 45, 999, 1093, 1255
PsuI RGATCY 1 cut(s) 1224
PsyI GACNNNGTC 2 cut(s) 491, 845
PvuII CAGCTG 1 cut(s) 1221
RsaI GTAC 5 cut(s) 113, 356, 385, 742, 1316
RsaNI GTAC 5 cut(s) 112, 355, 384, 741, 1315
RseI CAYNNNNRTG 2 cut(s) 972, 1012
SaqAI TTAA 2 cut(s) 870, 1023
SatI GCNGC 7 cut(s) 330, 468, 555, 645, 1089, 1219, 1254
Sau3AI GATC 8 cut(s) 139, 207, 754, 955, 964, 1138, 1224, 1272
Sau96I GGNCC 5 cut(s) 88, 721, 893, 917, 1124
SchI GAGTC 5 cut(s) 70, 421, 482, 1054, 1371
ScrFI CCNGG 2 cut(s) 1050, 1200
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 3 cut(s) 332, 685, 1044
SfcI CTRYAG 4 cut(s) 41, 995, 1089, 1251
SfuI TTCGAA 1 cut(s) 1207
SinI GGWCC 4 cut(s) 88, 721, 893, 1124
SmiMI CAYNNNNRTG 2 cut(s) 972, 1012
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 4 cut(s) 333, 445, 586, 1192
SsiI CCGC 6 cut(s) 29, 170, 329, 419, 475, 1309
StyD4I CCNGG 2 cut(s) 1048, 1198
StyI CCWWGG 2 cut(s) 708, 807
TaaI ACNGT 4 cut(s) 325, 897, 1011, 1056
TaqI TCGA 3 cut(s) 278, 399, 1207
TasI AATT 4 cut(s) 333, 445, 586, 1192
TatI WGTACW 4 cut(s) 111, 354, 383, 1314
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 3 cut(s) 37, 422, 1356
Tru1I TTAA 2 cut(s) 870, 1023
Tru9I TTAA 2 cut(s) 870, 1023
TscAI CASTG 5 cut(s) 121, 328, 364, 739, 967
TseI GCWGC 6 cut(s) 467, 554, 644, 1088, 1218, 1253
TspDTI ATGAA 3 cut(s) 95, 729, 786
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 5 cut(s) 121, 328, 364, 739, 967
Tth111I GACNNNGTC 2 cut(s) 491, 845
VpaK11BI GGWCC 4 cut(s) 88, 721, 893, 1124
XapI RAATTY 2 cut(s) 445, 586
XceI RCATGY 1 cut(s) 702
XcmI CCANNNNNNNNNTGG 1 cut(s) 1327
XmiI GTMKAC 2 cut(s) 840, 1115
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.