Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003755

Physical Location & Seq

Genomic Coordinates Forward (+)

33474826 .. 33487334

Gene Structure 12509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG162800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCGGTTGGGCATATGTGTCTTTGCGCCCACCAGGTGTTTAGAAAAGCAAATGCTTTGCAGAAAAGGGAGTTGGAAGCTTCGAGAGACGGTGATCGATTCGATTGCTGTCTCTCTGAGACAGCGATTCTGAGAGCAAGAAATAATCGAGGTTTAGGTTTTGTTTTGGCAGTACAGAGGGAGGGAGAGAGAAACGCTGAGAGCGAGGTAAGGATCGATAGCAAGATTTGGATCGGGTTTGGGAGGGAGGGAGGGATCTTTGAAGAACGATCCAATTTATATGCAGATCAGCTGGAGGATTTAATCATAGGGCTGGAAAGGCTTCTAAAAATCATTGAGTTGGAGAATCTGTCACTACTTGGCCGGCTCACTCTTTCCGCAGAGTCAACCGAGGGCAAAGTTGATGAGGTGAGCAGCAATCTGAAACTTCTCACTCTTTCCGCAGAGTCAACCGAGGGCAAAGTTGATGAGGTGAGCAGCAATCTGAAACTTCTCACTCTTTCTGCAGAGTCAACCAAGGGCAAAGTTCAGATTGCTGCTCACTCTTTCCGCAGGCTCACCTCATCAACTTTGCCTTCGGTTGACTCTGCGGAAAGAGTGAGAAGGTTTGGATTGCTGCTCACCTCATCAACTTTGCCCTCGGTTGACTCTGCGGAAAGAGCAAAGTTTCACAGCAGTACAACAAAGACACTCGATTATGTCGTGAGTCAGGCGGATACAACTGTTGAAAGCCTCCGGAATTTGTCTGGTTATCTTGGTGCAGCTAAGCGGACTGGAGTTGACTCCGTCTTTCTGCCATCAGATTTTCAGAGTAACATTGACACGACTATAACGAAACTCAACTCTGCTGCCTCTAAACTTTCTAATACAACTGAAAAGAATTCAAATCGTATAGATGATGGATTGGATAGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

33.38

Weight (kDa)

5.75

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12400
fragaria_vesca	FvH4_1g01880
malus_domestica	MD02G1016700.v1.1 MD15G1161200.v1.1
prunus_persica	Prupe.7G256400_v2.0.a1
pyrus_communis	pycom02g01500 pycom02g01540 pycom15g14490
rosa_chinensis	RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861
rosa_laevigata	RLG00000015810
rosa_multiflora	Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154080 Rroxscaffold_4G00314220
rosa_rugosa	Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300
rosa_samantha	Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500
rosa_wichuraiana	Rw1G012710 Rw2G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	735
AciI	CCGC	7 cut(s)	378, 441, 550, 590, 653, 713, 769
AclWI	GGATC	4 cut(s)	221, 239, 263, 264
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	739, 880
AdeI	CACNNNGTG	1 cut(s)	37
AfaI	GTAC	2 cut(s)	174, 679
AgsI	TTSAA	3 cut(s)	263, 728, 885
AjnI	CCWGG	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	3 cut(s)	80, 292, 764
AluI	AGCT	3 cut(s)	80, 292, 764
Alw26I	GTCTC	3 cut(s)	81, 113, 116
AlwI	GGATC	4 cut(s)	221, 239, 263, 264
Aor13HI	TCCGGA	1 cut(s)	735
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	6 cut(s)	414, 477, 536, 616, 761, 848
ApoI	RAATTY	2 cut(s)	739, 880
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	5 cut(s)	104, 421, 484, 550, 613
BaeI	ACNNNNGTAYC	2 cut(s)	708, 741
BbvI	GCAGC	6 cut(s)	426, 489, 523, 603, 773, 835
BccI	CCATC	2 cut(s)	805, 893
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	709
BcoDI	GTCTC	3 cut(s)	81, 113, 116
BfmI	CTRYAG	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	709
BisI	GCNGC	6 cut(s)	415, 478, 537, 617, 762, 849
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	6 cut(s)	416, 479, 538, 618, 763, 850
Bme1390I	CCNGG	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	35
BpmI	CTGGAG	2 cut(s)	314, 795
Bpu1102I	GCTNAGC	1 cut(s)	765
Bsa29I	ATCGAT	2 cut(s)	97, 216
BsaBI	GATNNNNATC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	390, 453, 516, 639
BsaWI	WCCGGW	1 cut(s)	735
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	778
Bse8I	GATNNNNATC	1 cut(s)	230
BseAI	TCCGGA	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	35
BseCI	ATCGAT	2 cut(s)	97, 216
BseDI	CCNNGG	4 cut(s)	390, 453, 516, 639
BseJI	GATNNNNATC	1 cut(s)	230
BseMII	CTCAG	3 cut(s)	108, 122, 189
BseNI	ACTGG	1 cut(s)	778
BseXI	GCAGC	6 cut(s)	426, 489, 523, 603, 773, 835
BsgI	GTGCAG	1 cut(s)	780
BshFI	GGCC	1 cut(s)	363
BshVI	ATCGAT	2 cut(s)	97, 216
BsiSI	CCGG	2 cut(s)	364, 736
BsmAI	GTCTC	3 cut(s)	81, 113, 116
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	363
Bsp13I	TCCGGA	1 cut(s)	735
Bsp143I	GATC	6 cut(s)	94, 213, 231, 255, 269, 286
Bsp1720I	GCTNAGC	1 cut(s)	765
BspACI	CCGC	7 cut(s)	378, 441, 550, 590, 653, 713, 769
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	3 cut(s)	109, 123, 190
BspDI	ATCGAT	2 cut(s)	97, 216
BspEI	TCCGGA	1 cut(s)	735
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	4 cut(s)	221, 239, 263, 264
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	778
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	4 cut(s)	390, 453, 516, 639
BssMI	GATC	6 cut(s)	94, 213, 231, 255, 269, 286
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	92, 724
BstC8I	GCNNGC	2 cut(s)	365, 554
BstDEI	CTNAG	4 cut(s)	117, 131, 198, 765
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	6 cut(s)	97, 216, 234, 258, 272, 289
BstMAI	GTCTC	3 cut(s)	81, 113, 116
BstMBI	GATC	6 cut(s)	94, 213, 231, 255, 269, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 659
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	6 cut(s)	426, 489, 523, 603, 773, 835
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
Bsu15I	ATCGAT	2 cut(s)	97, 216
BsuI	GTATCC	1 cut(s)	709
BsuRI	GGCC	1 cut(s)	363
BsuTUI	ATCGAT	2 cut(s)	97, 216
Cac8I	GCNNGC	2 cut(s)	365, 554
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	363
ClaI	ATCGAT	2 cut(s)	97, 216
CsiI	ACCWGGT	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	173, 678
CviJI	RGCY	9 cut(s)	80, 292, 313, 322, 363, 367, 556, 732, 764
CviKI_1	RGCY	9 cut(s)	80, 292, 313, 322, 363, 367, 556, 732, 764
CviQI	GTAC	2 cut(s)	173, 678
DdeI	CTNAG	4 cut(s)	117, 131, 198, 765
DpnI	GATC	6 cut(s)	96, 215, 233, 257, 271, 288
DpnII	GATC	6 cut(s)	94, 213, 231, 255, 269, 286
DraIII	CACNNNGTG	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	728
Eco130I	CCWWGG	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	81
FaiI	YATR	8 cut(s)	15, 17, 280, 282, 308, 699, 830, 893
FauNDI	CATATG	1 cut(s)	15
Fnu4HI	GCNGC	6 cut(s)	415, 478, 537, 617, 762, 849
Fsp4HI	GCNGC	6 cut(s)	415, 478, 537, 617, 762, 849
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	6 cut(s)	415, 478, 537, 617, 762, 849
GsuI	CTGGAG	2 cut(s)	314, 795
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	2 cut(s)	364, 736
HhaI	GCGC	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	6 cut(s)	387, 450, 513, 583, 646, 781
HindII	GTYRAC	6 cut(s)	387, 450, 513, 583, 646, 781
HindIII	AAGCTT	1 cut(s)	78
HpaII	CCGG	2 cut(s)	364, 736
HphI	GGTGA	5 cut(s)	104, 421, 484, 550, 613
Hpy166II	GTNNAC	6 cut(s)	387, 450, 513, 583, 646, 781
Hpy188I	TCNGA	7 cut(s)	118, 132, 423, 486, 531, 802, 810
Hpy188III	TCNNGA	3 cut(s)	84, 703, 736
Hpy8I	GTNNAC	6 cut(s)	387, 450, 513, 583, 646, 781
HpyAV	CCTTC	2 cut(s)	585, 597
HpyCH4III	ACNGT	2 cut(s)	92, 724
HpyCH4V	TGCA	4 cut(s)	61, 284, 506, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 659
HpyF3I	CTNAG	4 cut(s)	117, 131, 198, 765
HspAI	GCGC	1 cut(s)	27
Kpn2I	TCCGGA	1 cut(s)	735
KroI	GCCGGC	1 cut(s)	363
KroNI	GCCGGC	1 cut(s)	365
Kzo9I	GATC	6 cut(s)	94, 213, 231, 255, 269, 286
Lsp1109I	GCAGC	6 cut(s)	426, 489, 523, 603, 773, 835
MabI	ACCWGGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	351, 812
MalI	GATC	6 cut(s)	96, 215, 233, 257, 271, 288
MboI	GATC	6 cut(s)	94, 213, 231, 255, 269, 286
MboII	GAAGA	1 cut(s)	275
MflI	RGATCY	1 cut(s)	255
MluCI	AATT	3 cut(s)	274, 739, 880
MlyI	GAGTC	7 cut(s)	392, 455, 518, 578, 641, 715, 776
MmeI	TCCRAC	2 cut(s)	54, 321
MroI	TCCGGA	1 cut(s)	735
MroNI	GCCGGC	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	2 cut(s)	364, 736
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	319, 659
NaeI	GCCGGC	1 cut(s)	365
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	6 cut(s)	94, 213, 231, 255, 269, 286
NgoMIV	GCCGGC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 699, 830
PdiI	GCCGGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	99, 127, 346
PflFI	GACNNNGTC	1 cut(s)	785
PkrI	GCNGC	6 cut(s)	416, 479, 538, 618, 763, 850
PleI	GAGTC	7 cut(s)	391, 454, 517, 578, 641, 714, 776
PpsI	GAGTC	7 cut(s)	391, 454, 517, 578, 641, 714, 776
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	255
PsyI	GACNNNGTC	1 cut(s)	785
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	174, 679
RsaNI	GTAC	2 cut(s)	173, 678
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	6 cut(s)	415, 478, 537, 617, 762, 849
Sau3AI	GATC	6 cut(s)	94, 213, 231, 255, 269, 286
SchI	GAGTC	7 cut(s)	392, 455, 518, 578, 641, 715, 776
ScrFI	CCNGG	1 cut(s)	35
SexAI	ACCWGGT	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	504
Sse9I	AATT	3 cut(s)	274, 739, 880
SsiI	CCGC	7 cut(s)	378, 441, 550, 590, 653, 713, 769
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	92, 724
TaqI	TCGA	6 cut(s)	83, 97, 102, 148, 216, 693
TasI	AATT	3 cut(s)	274, 739, 880
TatI	WGTACW	2 cut(s)	172, 677
TfiI	GAWTC	3 cut(s)	99, 127, 346
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	6 cut(s)	414, 477, 536, 616, 761, 848
Tsp45I	GTSAC	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	775
Tth111I	GACNNNGTC	1 cut(s)	785
XapI	RAATTY	2 cut(s)	739, 880
XmnI	GAANNNNTTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.