Rroxscaffold_2G00154080

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
90762968 .. 90766752
3785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154080.1

Sequence Viewer

Length: 1503 bp
ATGTCAATCGTTAACTCAAAAAAACTGCTTCTTTTCCTCTCCCTTTTCCTCTTCATCGCTCTCACCTCCGGAAACACTCACATTTCTCACACATTTCGAGGCAGAGGTGGTGATGTTGTTGAGAGAGGTGTGGTGATGATAATGGATACAAGAAGGTCTCTTGCGGATGAGAATCTGCAGAACTCGTCTCTGATTCTGGCGAAGGAGAGGACTCGCAGGAAGGATCCTCTTGATGATTTTCATAAGTACACTGGTGGATGGAATATCAGCAATGATCATTACTGGGCTTCTGTTGCTTGGACTGCGGTTCCCTTCTTTCTCATTGCTGGTCTGTGTGTTGGATGCATTGTTCTGTACACTGGTCAGGCAAAGTTCCACAGCAGTACAACAAAGACACTCGATTATGTTGTGAGTCAGGCGGATACTACTGTTGAAAGCCTCCGGAATTTGTCAGGTTATCTTGGTGCAGCTAAGCGGATTGGAGTTGACTCCGTCTTTCTGCCATCAGATGTTCAGAGTAACATTGACACGACTATAACGAAACTCAACTCTGCCGCCACTAAACTTTCTAATACAACTGAAAAGAATTCAAATCGTATAGACGATGCATTGGATAGTGTAAGACTAGCTCTCATTGTCCTTGCTGCTGTTATGCTCTGTTTGGCCTTTCTTGGATTTTTATTCTCCATTCTGGGGATGCAGACTTGTGTGTACTTCTTGGTAGTTATTGGGTGGATTCTTGTTGCAAGCACATTCATAAAGTGTGGTGTATTTCTTCTCCTCCATAATGTGGTTGCAGATGCTTGTGTTTCAATGGATGAATGGGTCCAGCACCCCACTGCCCATACTGCTTTAGATGATCTACTCCCTTGTGTGGACAATGCTACTGCTCAAGAGACCTCATCACGCACCAAGGATACAACCTACAAACTTGTGAGCATGGTAGACAAGGTCATCAACAATATCTCAAATCTTAACAATCCACCCCCCCAACTTGGACCGTTATATTTCAATCAGTCTGGCCCTCTATTACCTGTTCTTTGCAACCCATACAACACTGATCTCTCAGATCGAAAGTGTGCCCTTGGTGAGGTGGAACTGCGGAATGCCACACAGGAGTGGAAGAGTTATGTGTGTGAGGTTAACACGGCAGGCATCTGTATAACCCCTGGACGGTTGACTCCCATCTTCTATGACCAAATGGAAGCCGCTGTAAATGTGAGTTATGGTTTGTATCGTTATGGTCCATTCTTGGTTGATCTGCAAGACTGCACATTTGTCAGGGACACATTCACCGAAATAAGTAATAGGAATTGTCCTGGCCTTCGAAAACATAGCAGCTGGATCTACATTGGGCTGGTAATGGTATCTGTAGCTGTCATGCTATCGTTGATCTTTTGGGTAATCTACGCAAGGGAACGAAGGCACCGCGTATACACCAAGCAGTTTATGGCTGGAGGTGGAGGAACAGGGGGATTCCAAGTCCAAGACAAGGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

500

Amino Acids

55.35

Weight (kDa)

7.52

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1425
AccB7I CCANNNNNTGG 1 cut(s) 790
AccI GTMKAC 2 cut(s) 945, 1434
AccII CGCG 1 cut(s) 1431
AccIII TCCGGA 2 cut(s) 68, 441
AciI CCGC 8 cut(s) 164, 305, 419, 475, 555, 1102, 1209, 1429
AclWI GGATC 3 cut(s) 218, 231, 1352
AcsI RAATTY 2 cut(s) 445, 586
AfaI GTAC 4 cut(s) 248, 356, 385, 713
AfiI CCNNNNNNNGG 7 cut(s) 693, 790, 874, 995, 1090, 1173, 1492
AgsI TTSAA 4 cut(s) 434, 591, 813, 1012
AjnI CCWGG 2 cut(s) 1168, 1318
AleI CACNNNNGTG 1 cut(s) 1117
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 4 cut(s) 470, 629, 1341, 1376
AluI AGCT 4 cut(s) 470, 629, 1341, 1376
Alw26I GTCTC 3 cut(s) 162, 192, 890
AlwI GGATC 3 cut(s) 218, 231, 1352
Aor13HI TCCGGA 2 cut(s) 68, 441
AoxI GGCC 3 cut(s) 663, 1021, 1321
ApeKI GCWGC 3 cut(s) 467, 644, 1338
ApoI RAATTY 2 cut(s) 445, 586
ArsI GACNNNNNNTTYG 2 cut(s) 1259, 1291
AspS9I GGNCC 4 cut(s) 826, 998, 1022, 1244
AsuHPI GGTGA 5 cut(s) 55, 122, 145, 1100, 1285
AsuII TTCGAA 1 cut(s) 1327
AvaII GGWCC 3 cut(s) 826, 998, 1244
BaeGI GKGCMC 1 cut(s) 1084
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BamHI GGATCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 1425
BbvI GCAGC 3 cut(s) 479, 631, 1350
BccI CCATC 3 cut(s) 252, 511, 1193
BceAI ACGGC 1 cut(s) 1164
BciT130I CCWGG 2 cut(s) 1170, 1320
BciVI GTATCC 3 cut(s) 139, 415, 910
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 3 cut(s) 162, 192, 890
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 2 cut(s) 176, 1371
BfuI GTATCC 3 cut(s) 139, 415, 910
BisI GCNGC 5 cut(s) 468, 555, 645, 1209, 1339
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 5 cut(s) 469, 556, 646, 1210, 1340
Bme1390I CCNGG 2 cut(s) 1170, 1320
Bme18I GGWCC 3 cut(s) 826, 998, 1244
BmgT120I GGNCC 4 cut(s) 826, 998, 1022, 1244
BmiI GGNNCC 4 cut(s) 225, 309, 827, 1427
BmrFI CCNGG 2 cut(s) 1170, 1320
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 5 cut(s) 332, 595, 687, 790, 1164
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 1476
Bpu1102I GCTNAGC 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 1327
BpuEI CTTGAG 1 cut(s) 876
BsaBI GATNNNNATC 1 cut(s) 171
BsaI GGTCTC 2 cut(s) 162, 890
BsaJI CCNNGG 3 cut(s) 912, 1084, 1168
BsaWI WCCGGW 2 cut(s) 68, 441
Bsc4I CCNNNNNNNGG 7 cut(s) 693, 790, 874, 995, 1090, 1173, 1492
Bse1I ACTGG 3 cut(s) 256, 287, 364
Bse3DI GCAATG 2 cut(s) 277, 321
Bse8I GATNNNNATC 1 cut(s) 171
BseAI TCCGGA 2 cut(s) 68, 441
BseBI CCWGG 2 cut(s) 1170, 1320
BseDI CCNNGG 3 cut(s) 912, 1084, 1168
BseGI GGATG 5 cut(s) 172, 263, 347, 702, 823
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 7 cut(s) 693, 790, 874, 995, 1090, 1173, 1492
BseMI GCAATG 2 cut(s) 277, 321
BseMII CTCAG 1 cut(s) 1080
BseNI ACTGG 3 cut(s) 256, 287, 364
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 1 cut(s) 1084
BseXI GCAGC 3 cut(s) 479, 631, 1350
BsgI GTGCAG 2 cut(s) 486, 1255
Bsh1236I CGCG 1 cut(s) 1431
BshFI GGCC 3 cut(s) 665, 1023, 1323
BshNI GGYRCC 1 cut(s) 1425
BsiSI CCGG 2 cut(s) 69, 442
BslFI GGGAC 1 cut(s) 1298
BslI CCNNNNNNNGG 7 cut(s) 693, 790, 874, 995, 1090, 1173, 1492
BsmAI GTCTC 3 cut(s) 162, 192, 890
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 1298
BsmI GAATGC 1 cut(s) 1111
BsnI GGCC 3 cut(s) 665, 1023, 1323
Bso31I GGTCTC 2 cut(s) 162, 890
Bsp119I TTCGAA 1 cut(s) 1327
Bsp1286I GDGCHC 1 cut(s) 1084
Bsp13I TCCGGA 2 cut(s) 68, 441
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 8 cut(s) 223, 274, 859, 1060, 1069, 1258, 1344, 1392
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 8 cut(s) 164, 305, 419, 475, 555, 1102, 1209, 1429
BspANI GGCC 3 cut(s) 665, 1023, 1323
BspCNI CTCAG 1 cut(s) 1079
BspEI TCCGGA 2 cut(s) 68, 441
BspFNI CGCG 1 cut(s) 1431
BspLI GGNNCC 4 cut(s) 225, 309, 827, 1427
BspMAI CTGCAG 1 cut(s) 180
BspPI GGATC 3 cut(s) 218, 231, 1352
BspT104I TTCGAA 1 cut(s) 1327
BspT107I GGYRCC 1 cut(s) 1425
BspTNI GGTCTC 2 cut(s) 162, 890
BsrDI GCAATG 2 cut(s) 277, 321
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 3 cut(s) 256, 287, 364
BssECI CCNNGG 3 cut(s) 912, 1084, 1168
BssMI GATC 8 cut(s) 223, 274, 859, 1060, 1069, 1258, 1344, 1392
BssNAI GTATAC 1 cut(s) 1435
BssT1I CCWWGG 2 cut(s) 912, 1084
Bst1107I GTATAC 1 cut(s) 1435
Bst2UI CCWGG 2 cut(s) 1170, 1320
Bst4CI ACNGT 3 cut(s) 430, 1002, 1176
Bst6I CTCTTC 2 cut(s) 56, 1118
BstAUI TGTACA 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 1327
BstC8I GCNNGC 2 cut(s) 748, 1153
BstDEI CTNAG 3 cut(s) 471, 1066, 1500
BstENI CCTNNNNNAGG 1 cut(s) 1088
BstF5I GGATG 5 cut(s) 172, 263, 347, 702, 823
BstFNI CGCG 1 cut(s) 1431
BstKTI GATC 8 cut(s) 226, 277, 862, 1063, 1072, 1261, 1347, 1395
BstMAI GTCTC 3 cut(s) 162, 192, 890
BstMBI GATC 8 cut(s) 223, 274, 859, 1060, 1069, 1258, 1344, 1392
BstMWI GCNNNNNNNGC 3 cut(s) 293, 302, 848
BstNI CCWGG 2 cut(s) 1170, 1320
BstSCI CCNGG 2 cut(s) 1168, 1318
BstSFI CTRYAG 2 cut(s) 176, 1371
BstSLI GKGCMC 1 cut(s) 1084
BstUI CGCG 1 cut(s) 1431
BstV1I GCAGC 3 cut(s) 479, 631, 1350
BstX2I RGATCY 2 cut(s) 223, 1344
BstYI RGATCY 2 cut(s) 223, 1344
BstZ17I GTATAC 1 cut(s) 1435
BsuI GTATCC 3 cut(s) 139, 415, 910
BsuRI GGCC 3 cut(s) 665, 1023, 1323
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 5 cut(s) 172, 263, 347, 702, 823
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 4 cut(s) 249, 357, 837, 1056
Cac8I GCNNGC 2 cut(s) 748, 1153
Cfr13I GGNCC 4 cut(s) 826, 998, 1022, 1244
Csp6I GTAC 4 cut(s) 247, 355, 384, 712
CviAII CATG 2 cut(s) 940, 1381
CviQI GTAC 4 cut(s) 247, 355, 384, 712
DdeI CTNAG 3 cut(s) 471, 1066, 1500
DpnI GATC 8 cut(s) 225, 276, 861, 1062, 1071, 1260, 1346, 1394
DpnII GATC 8 cut(s) 223, 274, 859, 1060, 1069, 1258, 1344, 1392
Eam1104I CTCTTC 2 cut(s) 56, 1118
EarI CTCTTC 2 cut(s) 56, 1118
EciI GGCGGA 1 cut(s) 434
Eco130I CCWWGG 2 cut(s) 912, 1084
Eco31I GGTCTC 2 cut(s) 162, 890
Eco47I GGWCC 3 cut(s) 826, 998, 1244
EcoNI CCTNNNNNAGG 1 cut(s) 1088
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 2 cut(s) 1168, 1318
EcoT14I CCWWGG 2 cut(s) 912, 1084
EcoT22I ATGCAT 2 cut(s) 347, 610
ErhI CCWWGG 2 cut(s) 912, 1084
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 2 cut(s) 943, 1384
FaqI GGGAC 1 cut(s) 1298
FatI CATG 2 cut(s) 939, 1380
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 2 cut(s) 945, 1434
Fnu4HI GCNGC 5 cut(s) 468, 555, 645, 1209, 1339
FokI GGATG 5 cut(s) 179, 270, 354, 709, 830
Fsp4HI GCNGC 5 cut(s) 468, 555, 645, 1209, 1339
FspBI CTAG 1 cut(s) 626
GluI GCNGC 5 cut(s) 468, 555, 645, 1209, 1339
GsuI CTGGAG 1 cut(s) 1476
HaeIII GGCC 3 cut(s) 665, 1023, 1323
HapII CCGG 2 cut(s) 69, 442
Hin1II CATG 2 cut(s) 943, 1384
HincII GTYRAC 4 cut(s) 13, 487, 1144, 1179
HindII GTYRAC 4 cut(s) 13, 487, 1144, 1179
HinfI GANTC 8 cut(s) 172, 193, 211, 412, 488, 736, 1180, 1476
HpaI GTTAAC 2 cut(s) 13, 1144
HpaII CCGG 2 cut(s) 69, 442
HphI GGTGA 5 cut(s) 55, 122, 145, 1100, 1285
Hpy188I TCNGA 4 cut(s) 192, 508, 516, 1069
Hpy188III TCNNGA 4 cut(s) 69, 230, 442, 893
HpyAV CCTTC 6 cut(s) 147, 196, 214, 322, 1334, 1416
HpyCH4III ACNGT 3 cut(s) 430, 1002, 1176
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 302, 848
HpyF3I CTNAG 3 cut(s) 471, 1066, 1500
Hsp92II CATG 2 cut(s) 943, 1384
Kpn2I TCCGGA 2 cut(s) 68, 441
Ksp22I TGATCA 1 cut(s) 274
KspAI GTTAAC 2 cut(s) 13, 1144
Kzo9I GATC 8 cut(s) 223, 274, 859, 1060, 1069, 1258, 1344, 1392
Lsp1109I GCAGC 3 cut(s) 479, 631, 1350
LweI GCATC 5 cut(s) 332, 595, 687, 790, 1164
MaeI CTAG 1 cut(s) 626
MaeIII GTNAC 1 cut(s) 518
MalI GATC 8 cut(s) 225, 276, 861, 1062, 1071, 1260, 1346, 1394
MboI GATC 8 cut(s) 223, 274, 859, 1060, 1069, 1258, 1344, 1392
MboII GAAGA 4 cut(s) 43, 767, 1135, 1180
MflI RGATCY 2 cut(s) 223, 1344
MhlI GDGCHC 1 cut(s) 1084
MluCI AATT 3 cut(s) 445, 586, 1312
MlyI GAGTC 4 cut(s) 205, 421, 482, 1174
MmeI TCCRAC 1 cut(s) 319
Mph1103I ATGCAT 2 cut(s) 347, 610
MroI TCCGGA 2 cut(s) 68, 441
MseI TTAA 3 cut(s) 12, 975, 1143
MslI CAYNNNNRTG 1 cut(s) 1117
MspA1I CMGCKG 2 cut(s) 1211, 1341
MspI CCGG 2 cut(s) 69, 442
MspR9I CCNGG 2 cut(s) 1170, 1320
Mva1269I GAATGC 1 cut(s) 1111
MvaI CCWGG 2 cut(s) 1170, 1320
MvnI CGCG 1 cut(s) 1431
MwoI GCNNNNNNNGC 3 cut(s) 293, 302, 848
NdeII GATC 8 cut(s) 223, 274, 859, 1060, 1069, 1258, 1344, 1392
NlaIII CATG 2 cut(s) 943, 1384
NlaIV GGNNCC 4 cut(s) 225, 309, 827, 1427
NsiI ATGCAT 2 cut(s) 347, 610
NspV TTCGAA 1 cut(s) 1327
OliI CACNNNNGTG 1 cut(s) 1117
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PctI GAATGC 1 cut(s) 1111
PfeI GAWTC 4 cut(s) 172, 193, 736, 1476
PflFI GACNNNGTC 2 cut(s) 491, 950
PflMI CCANNNNNTGG 1 cut(s) 790
PkrI GCNGC 5 cut(s) 469, 556, 646, 1210, 1340
PleI GAGTC 4 cut(s) 205, 420, 482, 1174
PpsI GAGTC 4 cut(s) 205, 420, 482, 1174
Psp6I CCWGG 2 cut(s) 1168, 1318
PspGI CCWGG 2 cut(s) 1168, 1318
PspN4I GGNNCC 4 cut(s) 225, 309, 827, 1427
PspPI GGNCC 4 cut(s) 826, 998, 1022, 1244
PstI CTGCAG 1 cut(s) 180
PsuI RGATCY 2 cut(s) 223, 1344
PsyI GACNNNGTC 2 cut(s) 491, 950
PvuII CAGCTG 1 cut(s) 1341
RsaI GTAC 4 cut(s) 248, 356, 385, 713
RsaNI GTAC 4 cut(s) 247, 355, 384, 712
RseI CAYNNNNRTG 1 cut(s) 1117
SaqAI TTAA 3 cut(s) 12, 975, 1143
SatI GCNGC 5 cut(s) 468, 555, 645, 1209, 1339
Sau3AI GATC 8 cut(s) 223, 274, 859, 1060, 1069, 1258, 1344, 1392
Sau96I GGNCC 4 cut(s) 826, 998, 1022, 1244
SchI GAGTC 4 cut(s) 205, 421, 482, 1174
ScrFI CCNGG 2 cut(s) 1170, 1320
SduI GDGCHC 1 cut(s) 1084
SfaNI GCATC 5 cut(s) 332, 595, 687, 790, 1164
SfcI CTRYAG 2 cut(s) 176, 1371
SfuI TTCGAA 1 cut(s) 1327
SinI GGWCC 3 cut(s) 826, 998, 1244
SmiMI CAYNNNNRTG 1 cut(s) 1117
SmlI CTYRAG 1 cut(s) 891
SmoI CTYRAG 1 cut(s) 891
Sse9I AATT 3 cut(s) 445, 586, 1312
SsiI CCGC 8 cut(s) 164, 305, 419, 475, 555, 1102, 1209, 1429
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 2 cut(s) 1168, 1318
StyI CCWWGG 2 cut(s) 912, 1084
TaaI ACNGT 3 cut(s) 430, 1002, 1176
TaqI TCGA 4 cut(s) 97, 399, 1072, 1327
TasI AATT 3 cut(s) 445, 586, 1312
TatI WGTACW 4 cut(s) 246, 354, 383, 711
TauI GCSGC 2 cut(s) 557, 1211
TfiI GAWTC 4 cut(s) 172, 193, 736, 1476
Tru1I TTAA 3 cut(s) 12, 975, 1143
Tru9I TTAA 3 cut(s) 12, 975, 1143
TscAI CASTG 4 cut(s) 256, 364, 844, 1063
TseI GCWGC 3 cut(s) 467, 644, 1338
TspDTI ATGAA 4 cut(s) 43, 230, 745, 834
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 4 cut(s) 256, 364, 844, 1063
Tth111I GACNNNGTC 2 cut(s) 491, 950
Van91I CCANNNNNTGG 1 cut(s) 790
VpaK11BI GGWCC 3 cut(s) 826, 998, 1244
XagI CCTNNNNNAGG 1 cut(s) 1088
XapI RAATTY 2 cut(s) 445, 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 1447
XmiI GTMKAC 2 cut(s) 945, 1434
XspI CTAG 1 cut(s) 626
Zsp2I ATGCAT 2 cut(s) 347, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.