Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007954.1

Orthogroup ID

OG0003755

Physical Location & Seq

Genomic Coordinates Forward (+)

18495 .. 18911

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007954.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgtcaatctttaactcaaaaaaactgcttcttttcctctcccttttcctcttcatcgctctcacctccggaaacactcacatttctcacacattacgaggcagaggtggtggtgatgttgagagagatgtgatgacaatggatacaagaaggtctcttgcggatgagaatctgcagaactcgtctctgattctggcgaaggagaggactcgcaggaaggaccctcttgatgattttcataagtacactggtggatggaatatcagcaatgatcattactgggctgtgagttcttggaatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.6

Weight (kDa)

9.22

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12400
fragaria_vesca	FvH4_1g01880
malus_domestica	MD02G1016700.v1.1 MD15G1161200.v1.1
prunus_persica	Prupe.7G256400_v2.0.a1
pyrus_communis	pycom02g01500 pycom02g01540 pycom15g14490
rosa_chinensis	RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861
rosa_laevigata	RLG00000015810
rosa_multiflora	Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154080 Rroxscaffold_4G00314220
rosa_rugosa	Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300
rosa_samantha	Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500
rosa_wichuraiana	Rw1G012710 Rw2G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	159, 189
Aor13HI	TCCGGA	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	55, 125
AvaII	GGWCC	1 cut(s)	220
BccI	CCATC	1 cut(s)	249
BciVI	GTATCC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	159, 189
BfmI	CTRYAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	253, 284
Bse3DI	GCAATG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	68
BseGI	GGATG	2 cut(s)	169, 260
BseJI	GATNNNNATC	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	274
BseNI	ACTGG	2 cut(s)	253, 284
BsiSI	CCGG	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	159, 189
BsmBI	CGTCTC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	159
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	161
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	253, 284
BssMI	GATC	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	169, 260
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	2 cut(s)	159, 189
BstMBI	GATC	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	169, 260
BtsIMutI	CAGTG	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	244
CviJI	RGCY	1 cut(s)	284
CviKI_1	RGCY	1 cut(s)	284
CviQI	GTAC	1 cut(s)	244
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	189
FaiI	YATR	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	271
FokI	GGATG	2 cut(s)	176, 267
HapII	CCGG	1 cut(s)	69
HinfI	GANTC	4 cut(s)	169, 190, 208, 298
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	55, 125
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	69, 227
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	3 cut(s)	144, 193, 211
HpyCH4V	TGCA	1 cut(s)	175
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	82, 179, 199, 234, 265
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	7 cut(s)	47, 59, 76, 92, 98, 198, 234
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	1 cut(s)	12
MspI	CCGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	169, 190, 298
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	177
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	202
SetI	ASST	3 cut(s)	68, 109, 155
SfcI	CTRYAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	220
SsiI	CCGC	1 cut(s)	161
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	169, 190, 298
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	43, 227
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.