Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003346

Physical Location & Seq

Genomic Coordinates Reverse (-)

4403243 .. 4408249

Gene Structure 5007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGACGCTCAGTCGCAGCAGCAAGCTGGACCAGTGAAGAAGAAGGAGACTCGGGGCCGGAAGCCCAAGCCCAAGGAAGAGAAGAAGGACGACCACCAACAGCAAGCCAAGCTCAAGAAGTCGCAGCAGAACGCCACAGTCGACGACAAGTACACTCAGTGGAAGTCCCTCGTCCCCATCCTCTACGACTGGCTTGCCAACCACAACCTCGTCTGGCCCTCCCTCTCTTGCCGGTGGGGTCCTCAGCTCGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCCGAGCAGACCGATGGCAGTGTCCCAAATACTCTGGTTATTGCAAATTGTGAGATTGTCAAACCTAGAGTCGCCGCTGCAGAGCATATATCTCAGTTCAATGAGGAAGCCCGCTCACCATTTGTGAAGAAGTACAAGACCATCATTCATCCTGGAGAGGTAAACAGAATCAGAGAACTTCCACAGAACACTAAGATAGTGGCCACGCATACCGACAGTCCTGATGTTCTAATTTGGGATGTCGAAGCTCAACCTAACCGTCATGCTGTCCTAGGAGCTTCAACCTCGCGTCCAGATTTGATTTTGACTGGACATCAAGATAATGCAGAATATGCCCTTGCAATGTGTCCAACTGAGCCCTACGTGCTCTCTGGAGGGAAGGACAAAACAGTGGTGTTGTGGAGTATTCAGGACCATATAGCAGCCTCTACCACTGATCCAGCAGCAAACAAGTCTCCAGGATCTGGTGCATCAATCGTTAAAAACTCAAAGTCTGGGGATGGTAATGATAAAGTTACTGATGGTCCTACTGTTGCTCCTCGGGGAATCTACTATGGGCATGAGGATACAGTCGAAGATGTGGCGTTTTGCCCATCTAGTTCACAGGAGTTCTGTAGTGTTGGTGATGATTCCTGCCTCATATTATGGGATGCACGTGTCGGCTCTAGCCCTGCTGTAAAGGTTGAAAAGGCTCATGATGCTGATGTTCACTGTGTTGATTGGAATCCCCATAATGATAACCTTATTCTAACAGGGTCAGCAGATAATTCTGTACGCGTGTTTGATCGTCGGAATCTCACTTCTGAAGGAGTGGGGGCACCCATATATAAATTTGAGGGTCATACAGCAGCTGTTCTTTGTGTTCAGTGGTGTCCAGACAAATCGTCTGTCTTTGGAAGTTCTGCAGAGGATGGTCTTTTAAACATTTGGGATTATGAGAAGGTCGGTAAGGAGCGAACTCCAAAAGGCCCAACTTCTCCACCTGGCCTGTTTTTCCAGCATGCTGGGCACAGGGACAAGGTTGTTGATTTTCATTGGAATGCATCTGATCCATGGACTGTTGTCAGTGTGTCTGATGACTGTGATAGTACTGGCGGAGGGGGCACATTGCAGATATGGAGAATGAGTGATCTGATCTACAGGCCCGAAGAGGAGGTTCTGGCAGAGCTTGAGAAGTTCAAGTCCCATGTTGTTTCCTGTACTTCAAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009892 GO:0009987 GO:0010224 GO:0010468 GO:0010605 GO:0010629 GO:0019222 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

501

Amino Acids

55.23

Weight (kDa)

5.88

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1C_H4-bd	PF12265	49 - 116	6.7e-20	Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_WDR5	PF25175	259 - 410	2.6e-20	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	274 - 411	5.8e-11	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	280 - 361	1.2e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	281 - 360	2.6e-06	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	281 - 358	9.4e-07	WDR3 first beta-propeller domain
Beta-prop_EIPR1	PF23609	282 - 357	1.1e-09	EIPR1 beta-propeller
WD40_CDC20-Fz	PF24807	282 - 409	1.7e-15	CDC20/Fizzy WD40 domain
WDR55	PF24796	283 - 410	5.4e-06	WDR55
Beta-prop_RIG_2nd	PF23775	284 - 361	6.7e-06	RIG second beta-propeller
Beta-prop_Aladin	PF25460	286 - 415	1.6e-07	Aladin seven-bladed propeller
Beta-prop_EML_2	PF23414	293 - 413	9e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	325 - 410	9.7e-09	WDR3 first beta-propeller domain
WD40	PF00400	325 - 358	8.9e-07	WD domain, G-beta repeat
WD40_Prp19	PF24814	326 - 455	3e-11	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	328 - 412	1.3e-12	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	329 - 411	1.8e-07	WDHD1 first WD40 domain
WD40	PF00400	369 - 407	1e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19520 AT4G29730 AT4G29730 AT4G29730
fragaria_vesca	FvH4_1g07500 FvH4_6g33340 FvH4_6g33340
malus_domestica	MD02G1079600.v1.1 MD09G1193500.v1.1 MD15G1207100.v1.1
prunus_persica	Prupe.3G049900_v2.0.a1 Prupe.7G209600_v2.0.a1 Prupe.7G209600_v2.0.a1
pyrus_communis	pycom02g06340 pycom09g11000 pycom15g18350
rosa_chinensis	RchiOBHm_Chr2g0093391 RchiOBHm_Chr2g0143191
rosa_laevigata	RLG00000016395 RLG00000020012
rosa_multiflora	Rmu_sc0005227.1_g000015 Rmu_sc0032382.1_g000001 Rmu_ssc0000301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102060 Rroxscaffold_2G00148140
rosa_rugosa	Rorug02G0035100 Rorug02G0379000
rosa_samantha	Rh2AG431800 Rh2BG082700 Rh2BG440400 Rh2CG084700 Rh2CG417700 Rh2DG080400 Rh2DG450600
rosa_wichuraiana	Rw2G006520 Rw2G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1105
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccBSI	CCGCTC	1 cut(s)	402
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	2 cut(s)	577, 1065
AciI	CCGC	3 cut(s)	363, 400, 1383
AclWI	GGATC	3 cut(s)	719, 757, 1331
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	1118
AcuI	CTGAAG	1 cut(s)	1113
AcvI	CACGTG	1 cut(s)	944
AdeI	CACNNNGTG	1 cut(s)	159
AfaI	GTAC	5 cut(s)	152, 422, 1062, 1378, 1489
AfiI	CCNNNNNNNGG	1 cut(s)	752
AflIII	ACRYGT	2 cut(s)	943, 1063
AgsI	TTSAA	5 cut(s)	388, 570, 974, 1468, 1494
AhdI	GACNNNNNGTC	2 cut(s)	10, 1171
AjnI	CCWGG	3 cut(s)	439, 745, 1270
AluBI	AGCT	8 cut(s)	26, 112, 247, 257, 536, 566, 1139, 1456
AluI	AGCT	8 cut(s)	26, 112, 247, 257, 536, 566, 1139, 1456
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	3 cut(s)	41, 284, 747
AlwI	GGATC	3 cut(s)	719, 757, 1331
AlwNI	CAGNNNCTG	2 cut(s)	752, 1139
Ama87I	CYCGRG	3 cut(s)	51, 248, 828
AoxI	GGCC	6 cut(s)	55, 215, 489, 1255, 1273, 1430
ApeKI	GCWGC	7 cut(s)	16, 19, 124, 365, 710, 731, 1136
ApoI	RAATTY	1 cut(s)	1118
ArsI	GACNNNNNNTTYG	4 cut(s)	342, 374, 1161, 1193
AspA2I	CCTAGG	1 cut(s)	559
AspS9I	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 812, 1256, 1431
AsuHPI	GGTGA	2 cut(s)	396, 923
AvaI	CYCGRG	3 cut(s)	51, 248, 828
AvaII	GGWCC	4 cut(s)	29, 239, 700, 812
AvrII	CCTAGG	1 cut(s)	559
BaeGI	GKGCMC	3 cut(s)	1108, 1299, 1394
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	1105
BanII	GRGCYC	1 cut(s)	648
BbrPI	CACGTG	1 cut(s)	944
Bbv12I	GWGCWC	1 cut(s)	657
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	7 cut(s)	28, 31, 136, 352, 722, 743, 1148
BccI	CCATC	7 cut(s)	185, 296, 437, 782, 803, 889, 1193
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	3 cut(s)	441, 747, 1272
BciVI	GTATCC	1 cut(s)	847
BcoDI	GTCTC	3 cut(s)	41, 284, 747
BfaI	CTAG	4 cut(s)	354, 560, 885, 954
BfmI	CTRYAG	4 cut(s)	366, 901, 1191, 1426
BfuI	GTATCC	1 cut(s)	847
BisI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1137
BlnI	CCTAGG	1 cut(s)	559
BlsI	GCNGC	8 cut(s)	18, 21, 126, 364, 367, 712, 733, 1138
BmcAI	AGTACT	1 cut(s)	1378
Bme1390I	CCNGG	3 cut(s)	441, 747, 1272
Bme18I	GGWCC	4 cut(s)	29, 239, 700, 812
BmeRI	GACNNNNNGTC	2 cut(s)	10, 1171
BmeT110I	CYCGRG	3 cut(s)	51, 248, 828
BmgT120I	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 812, 1256, 1431
BmiI	GGNNCC	3 cut(s)	56, 240, 1107
BmrFI	CCNGG	3 cut(s)	441, 747, 1272
BmsI	GCATC	4 cut(s)	767, 928, 976, 1340
BoxI	GACNNNNGTC	1 cut(s)	1349
BpmI	CTGGAG	3 cut(s)	462, 681, 729
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	2 cut(s)	98, 1478
BsaAI	YACGTR	2 cut(s)	652, 944
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaJI	CCNNGG	4 cut(s)	72, 559, 827, 1340
BsaXI	ACNNNNNCTCC	4 cut(s)	808, 838, 1399, 1429
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	4 cut(s)	32, 194, 601, 1384
Bse3DI	GCAATG	2 cut(s)	636, 1394
Bse8I	GATNNNNATC	1 cut(s)	1011
BseBI	CCWGG	3 cut(s)	441, 747, 1272
BseDI	CCNNGG	4 cut(s)	72, 559, 827, 1340
BseGI	GGATG	6 cut(s)	177, 436, 532, 793, 943, 1204
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMI	GCAATG	2 cut(s)	636, 1394
BseMII	CTCAG	5 cut(s)	23, 170, 257, 395, 633
BseNI	ACTGG	4 cut(s)	32, 194, 601, 1384
BseRI	GAGGAG	2 cut(s)	816, 1454
BseSI	GKGCMC	3 cut(s)	1108, 1299, 1394
BseXI	GCAGC	7 cut(s)	28, 31, 136, 352, 722, 743, 1148
BseYI	CCCAGC	1 cut(s)	1292
Bsh1236I	CGCG	2 cut(s)	577, 1065
BshFI	GGCC	6 cut(s)	57, 217, 491, 1257, 1275, 1432
BshNI	GGYRCC	1 cut(s)	1105
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	3 cut(s)	51, 248, 828
BsiSI	CCGG	2 cut(s)	58, 232
BslFI	GGGAC	5 cut(s)	151, 158, 296, 1316, 1456
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	3 cut(s)	41, 284, 747
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	5 cut(s)	151, 158, 296, 1316, 1456
BsmI	GAATGC	1 cut(s)	1333
BsnI	GGCC	6 cut(s)	57, 217, 491, 1257, 1275, 1432
BsoBI	CYCGRG	3 cut(s)	51, 248, 828
Bsp1286I	GDGCHC	5 cut(s)	648, 657, 1108, 1299, 1394
Bsp143I	GATC	6 cut(s)	724, 749, 1072, 1336, 1417, 1422
Bsp19I	CCATGG	1 cut(s)	1340
BspACI	CCGC	3 cut(s)	363, 400, 1383
BspANI	GGCC	6 cut(s)	57, 217, 491, 1257, 1275, 1432
BspCNI	CTCAG	5 cut(s)	22, 169, 256, 394, 634
BspFNI	CGCG	2 cut(s)	577, 1065
BspHI	TCATGA	1 cut(s)	982
BspLI	GGNNCC	3 cut(s)	56, 240, 1107
BspMAI	CTGCAG	2 cut(s)	370, 1195
BspPI	GGATC	3 cut(s)	719, 757, 1331
BspT107I	GGYRCC	1 cut(s)	1105
BsrBI	CCGCTC	1 cut(s)	402
BsrDI	GCAATG	2 cut(s)	636, 1394
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	4 cut(s)	32, 194, 601, 1384
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	4 cut(s)	72, 559, 827, 1340
BssMI	GATC	6 cut(s)	724, 749, 1072, 1336, 1417, 1422
BssT1I	CCWWGG	3 cut(s)	72, 559, 1340
Bst2UI	CCWGG	3 cut(s)	441, 747, 1272
Bst4CI	ACNGT	9 cut(s)	139, 506, 548, 679, 820, 859, 1001, 1348, 1370
Bst6I	CTCTTC	2 cut(s)	72, 1431
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBAI	YACGTR	2 cut(s)	652, 944
BstC8I	GCNNGC	7 cut(s)	24, 105, 195, 255, 275, 400, 1290
BstDEI	CTNAG	6 cut(s)	9, 156, 243, 381, 480, 642
BstDSI	CCRYGG	1 cut(s)	1340
BstF5I	GGATG	6 cut(s)	177, 436, 532, 793, 943, 1204
BstFNI	CGCG	2 cut(s)	577, 1065
BstKTI	GATC	6 cut(s)	727, 752, 1075, 1339, 1420, 1425
BstMAI	GTCTC	3 cut(s)	41, 284, 747
BstMBI	GATC	6 cut(s)	724, 749, 1072, 1336, 1417, 1422
BstMWI	GCNNNNNNNGC	6 cut(s)	109, 620, 652, 986, 1294, 1389
BstNI	CCWGG	3 cut(s)	441, 747, 1272
BstNSI	RCATGY	1 cut(s)	1292
BstPAI	GACNNNNGTC	1 cut(s)	1349
BstSCI	CCNGG	3 cut(s)	439, 745, 1270
BstSFI	CTRYAG	4 cut(s)	366, 901, 1191, 1426
BstSLI	GKGCMC	3 cut(s)	1108, 1299, 1394
BstUI	CGCG	2 cut(s)	577, 1065
BstV1I	GCAGC	7 cut(s)	28, 31, 136, 352, 722, 743, 1148
BstX2I	RGATCY	1 cut(s)	749
BstXI	CCANNNNNNTGG	1 cut(s)	1292
BstYI	RGATCY	1 cut(s)	749
BsuI	GTATCC	1 cut(s)	847
BsuRI	GGCC	6 cut(s)	57, 217, 491, 1257, 1275, 1432
BtgI	CCRYGG	1 cut(s)	1340
BtsCI	GGATG	6 cut(s)	177, 436, 532, 793, 943, 1204
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	8 cut(s)	39, 164, 313, 684, 720, 997, 1160, 1360
Cac8I	GCNNGC	7 cut(s)	24, 105, 195, 255, 275, 400, 1290
CaiI	CAGNNNCTG	2 cut(s)	752, 1139
CciI	TCATGA	1 cut(s)	982
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 812, 1256, 1431
CseI	GACGC	3 cut(s)	14, 266, 566
Csp6I	GTAC	5 cut(s)	151, 421, 1061, 1377, 1488
CviAII	CATG	6 cut(s)	551, 848, 983, 1289, 1341, 1475
CviQI	GTAC	5 cut(s)	151, 421, 1061, 1377, 1488
DdeI	CTNAG	6 cut(s)	9, 156, 243, 381, 480, 642
DpnI	GATC	6 cut(s)	726, 751, 1074, 1338, 1419, 1424
DpnII	GATC	6 cut(s)	724, 749, 1072, 1336, 1417, 1422
DraI	TTTAAA	1 cut(s)	1209
DraIII	CACNNNGTG	1 cut(s)	159
DriI	GACNNNNNGTC	2 cut(s)	10, 1171
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	72, 1431
Eam1105I	GACNNNNNGTC	2 cut(s)	10, 1171
EarI	CTCTTC	2 cut(s)	72, 1431
EciI	GGCGGA	1 cut(s)	1398
Eco130I	CCWWGG	3 cut(s)	72, 559, 1340
Eco24I	GRGCYC	1 cut(s)	648
Eco47I	GGWCC	4 cut(s)	29, 239, 700, 812
Eco57I	CTGAAG	1 cut(s)	1113
Eco72I	CACGTG	1 cut(s)	944
Eco88I	CYCGRG	3 cut(s)	51, 248, 828
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	439, 745, 1270
EcoT14I	CCWWGG	3 cut(s)	72, 559, 1340
EcoT22I	ATGCAT	1 cut(s)	1333
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	3 cut(s)	72, 559, 1340
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	6 cut(s)	554, 851, 986, 1292, 1344, 1478
FaqI	GGGAC	5 cut(s)	151, 158, 296, 1316, 1456
FatI	CATG	6 cut(s)	550, 847, 982, 1288, 1340, 1474
FauI	CCCGC	1 cut(s)	407
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1137
FokI	GGATG	6 cut(s)	164, 423, 539, 800, 950, 1211
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1137
FspBI	CTAG	4 cut(s)	354, 560, 885, 954
GluI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1137
GsaI	CCCAGC	1 cut(s)	1296
GsuI	CTGGAG	3 cut(s)	462, 681, 729
HaeIII	GGCC	6 cut(s)	57, 217, 491, 1257, 1275, 1432
HapII	CCGG	2 cut(s)	58, 232
HgaI	GACGC	3 cut(s)	14, 266, 566
Hin1II	CATG	6 cut(s)	554, 851, 986, 1292, 1344, 1478
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	8 cut(s)	49, 268, 357, 456, 834, 917, 1012, 1081
HpaII	CCGG	2 cut(s)	58, 232
HphI	GGTGA	2 cut(s)	396, 923
Hpy166II	GTNNAC	5 cut(s)	142, 153, 451, 890, 997
Hpy188I	TCNGA	7 cut(s)	292, 461, 1080, 1093, 1336, 1363, 1422
Hpy188III	TCNNGA	8 cut(s)	115, 509, 581, 605, 660, 698, 983, 1163
Hpy8I	GTNNAC	5 cut(s)	142, 153, 451, 890, 997
Hpy99I	CGWCG	2 cut(s)	146, 1080
HpyAV	CCTTC	5 cut(s)	37, 79, 661, 1088, 1222
HpyCH4III	ACNGT	9 cut(s)	139, 506, 548, 679, 820, 859, 1001, 1348, 1370
HpyCH4IV	ACGT	2 cut(s)	651, 943
HpyCH4V	TGCA	9 cut(s)	332, 368, 614, 629, 758, 941, 1193, 1331, 1399
HpyF10VI	GCNNNNNNNGC	6 cut(s)	109, 620, 652, 986, 1294, 1389
HpyF3I	CTNAG	6 cut(s)	9, 156, 243, 381, 480, 642
HpySE526I	ACGT	2 cut(s)	651, 943
Hsp92II	CATG	6 cut(s)	554, 851, 986, 1292, 1344, 1478
Kzo9I	GATC	6 cut(s)	724, 749, 1072, 1336, 1417, 1422
LmnI	GCTCC	3 cut(s)	563, 829, 1240
Lsp1109I	GCAGC	7 cut(s)	28, 31, 136, 352, 722, 743, 1148
LweI	GCATC	4 cut(s)	767, 928, 976, 1340
MaeI	CTAG	4 cut(s)	354, 560, 885, 954
MaeII	ACGT	2 cut(s)	651, 943
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	6 cut(s)	726, 751, 1074, 1338, 1419, 1424
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	6 cut(s)	724, 749, 1072, 1336, 1417, 1422
MboII	GAAGA	7 cut(s)	49, 52, 89, 94, 427, 875, 1448
MflI	RGATCY	1 cut(s)	749
MhlI	GDGCHC	5 cut(s)	648, 657, 1108, 1299, 1394
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	4 cut(s)	334, 519, 1054, 1118
MluI	ACGCGT	1 cut(s)	1063
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	2 cut(s)	43, 366
MmeI	TCCRAC	2 cut(s)	662, 1058
Mox20I	TGGCCA	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	1333
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	2 cut(s)	768, 1208
MslI	CAYNNNNRTG	1 cut(s)	1326
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	2 cut(s)	365, 1139
MspI	CCGG	2 cut(s)	58, 232
MspR9I	CCNGG	3 cut(s)	441, 747, 1272
Mva1269I	GAATGC	1 cut(s)	1333
MvaI	CCWGG	3 cut(s)	441, 747, 1272
MvnI	CGCG	2 cut(s)	577, 1065
MwoI	GCNNNNNNNGC	6 cut(s)	109, 620, 652, 986, 1294, 1389
NcoI	CCATGG	1 cut(s)	1340
NdeII	GATC	6 cut(s)	724, 749, 1072, 1336, 1417, 1422
NlaIII	CATG	6 cut(s)	554, 851, 986, 1292, 1344, 1478
NlaIV	GGNNCC	3 cut(s)	56, 240, 1107
NsiI	ATGCAT	1 cut(s)	1333
NspI	RCATGY	1 cut(s)	1292
PaeI	GCATGC	1 cut(s)	1292
PaeR7I	CTCGAG	1 cut(s)	248
PagI	TCATGA	1 cut(s)	982
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	1333
PfeI	GAWTC	6 cut(s)	268, 456, 834, 917, 1012, 1081
PflMI	CCANNNNNTGG	1 cut(s)	752
PfoI	TCCNGGA	2 cut(s)	439, 745
PkrI	GCNGC	8 cut(s)	18, 21, 126, 364, 367, 712, 733, 1138
PleI	GAGTC	2 cut(s)	43, 365
PmaCI	CACGTG	1 cut(s)	944
PmlI	CACGTG	1 cut(s)	944
PpsI	GAGTC	2 cut(s)	43, 365
Ppu21I	YACGTR	2 cut(s)	652, 944
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	1349
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	3 cut(s)	439, 745, 1270
PspCI	CACGTG	1 cut(s)	944
PspFI	CCCAGC	1 cut(s)	1292
PspGI	CCWGG	3 cut(s)	439, 745, 1270
PspN4I	GGNNCC	3 cut(s)	56, 240, 1107
PspPI	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 812, 1256, 1431
PspPPI	RGGWCCY	1 cut(s)	239
PspXI	VCTCGAGB	1 cut(s)	248
PstI	CTGCAG	2 cut(s)	370, 1195
PstNI	CAGNNNCTG	2 cut(s)	752, 1139
PsuI	RGATCY	1 cut(s)	749
PvuII	CAGCTG	1 cut(s)	1139
RsaI	GTAC	5 cut(s)	152, 422, 1062, 1378, 1489
RsaNI	GTAC	5 cut(s)	151, 421, 1061, 1377, 1488
RseI	CAYNNNNRTG	1 cut(s)	1326
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	768, 1208
SatI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1137
Sau3AI	GATC	6 cut(s)	724, 749, 1072, 1336, 1417, 1422
Sau96I	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 812, 1256, 1431
ScaI	AGTACT	1 cut(s)	1378
SchI	GAGTC	2 cut(s)	43, 366
ScrFI	CCNGG	3 cut(s)	441, 747, 1272
SduI	GDGCHC	5 cut(s)	648, 657, 1108, 1299, 1394
SfaNI	GCATC	4 cut(s)	767, 928, 976, 1340
SfcI	CTRYAG	4 cut(s)	366, 901, 1191, 1426
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	4 cut(s)	29, 239, 700, 812
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	1326
SmlI	CTYRAG	3 cut(s)	113, 248, 1457
SmoI	CTYRAG	3 cut(s)	113, 248, 1457
SphI	GCATGC	1 cut(s)	1292
Sse9I	AATT	4 cut(s)	334, 519, 1054, 1118
SsiI	CCGC	3 cut(s)	363, 400, 1383
SspMI	CTAG	4 cut(s)	354, 560, 885, 954
StyD4I	CCNGG	3 cut(s)	439, 745, 1270
StyI	CCWWGG	3 cut(s)	72, 559, 1340
TaaI	ACNGT	9 cut(s)	139, 506, 548, 679, 820, 859, 1001, 1348, 1370
TaiI	ACGT	2 cut(s)	654, 946
TaqI	TCGA	4 cut(s)	141, 249, 531, 861
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	4 cut(s)	334, 519, 1054, 1118
TatI	WGTACW	4 cut(s)	150, 420, 1376, 1487
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	6 cut(s)	268, 456, 834, 917, 1012, 1081
Tru1I	TTAA	2 cut(s)	768, 1208
Tru9I	TTAA	2 cut(s)	768, 1208
TscAI	CASTG	8 cut(s)	39, 164, 313, 684, 727, 1004, 1160, 1360
TseI	GCWGC	7 cut(s)	16, 19, 124, 365, 710, 731, 1136
TspDTI	ATGAA	2 cut(s)	425, 1310
TspRI	CASTG	8 cut(s)	39, 164, 313, 684, 727, 1004, 1160, 1360
Van91I	CCANNNNNTGG	1 cut(s)	752
VpaK11BI	GGWCC	4 cut(s)	29, 239, 700, 812
XapI	RAATTY	1 cut(s)	1118
XceI	RCATGY	1 cut(s)	1292
XhoI	CTCGAG	1 cut(s)	248
XmaJI	CCTAGG	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	4 cut(s)	354, 560, 885, 954
ZrmI	AGTACT	1 cut(s)	1378
Zsp2I	ATGCAT	1 cut(s)	1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.