Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006124

Physical Location & Seq

Genomic Coordinates Forward (+)

5992204 .. 5993829

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGCATGGCACTGAGATAGCATTTCTCAAATCGAGAAGAGGATTTGTTCGCATAGCCATGGAGCTGGGCCATCCCCTGGTTCCAGTTTTCTGCTTTGGTCAGTCAAATGTTTACAAGTGGTGGAAGCCAAGTGGAGAATTAATTTTGAAGTTTGCTAGAGCTATCAAGTTCACCCCAATTTTCTTCCGGGGAGTATTTGGAACTCCAGTACCCTACCGTCTTCCAATGCATGTGGTGGTCGGAAAACCAATTGAACTCAAGAAAACACCACAACCCACGATGGAAGAGGTGAACGAAGTGCACGGTCAGTTCGTTGCAGCACTAGAGGATCTTTTCGAAAGGCACAAGGCTCGGGTTGGTCACGCCGATCTTCGATTGAAAATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0031984 GO:0034389 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:0071840 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko04975 map00561 map04975

Pfam Domains

Protein Families

DAGAT

Protein Analysis

131

Amino Acids

14.92

Weight (kDa)

9.86

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51520
fragaria_vesca	FvH4_1g09760 FvH4_1g09760
malus_domestica	MD02G1107700.v1.1 MD02G1107800.v1.1 MD15G1227200.v1.1
prunus_persica	Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1
pyrus_communis	pycom02g08660 pycom15g20210
rosa_chinensis	RchiOBHm_Chr2g0096691
rosa_laevigata	RLG00000016662 RLG00000036260
rosa_multiflora	Rmu_sc0003565.1_g000021
rosa_roxburghii	Rroxscaffold_2G00145410 Rroxscaffold_6G00397690
rosa_rugosa	Rorug02G0059600 Rorug02G0059700 Rorug04G0089100
rosa_samantha	Rh2AG107100 Rh2BG109500 Rh2CG111300 Rh2DG110900 Rh5BG533300 Rh6AG230400
rosa_wichuraiana	Rw2G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	79
AclWI	GGATC	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	384
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	151, 257, 382
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	67, 164
AluI	AGCT	2 cut(s)	67, 164
Alw21I	GWGCWC	1 cut(s)	306
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	1 cut(s)	70
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	384
AseI	ATTAAT	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	166, 304
AsuII	TTCGAA	1 cut(s)	339
AvaI	CYCGRG	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	195, 228
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	81, 277
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	191
BfaI	CTAG	2 cut(s)	159, 326
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	80, 191
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	80, 191
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	60, 78, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	86, 209
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	60, 78, 190
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	86, 209
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	332
BseYI	CCCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	79
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	331, 370
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	86, 209
BssECI	CCNNGG	3 cut(s)	60, 78, 190
BssMI	GATC	2 cut(s)	331, 370
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	221, 308
Bst6I	CTCTTC	2 cut(s)	34, 282
BstBI	TTCGAA	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	334, 373
BstMBI	GATC	2 cut(s)	331, 370
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	78, 189
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	212
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	3 cut(s)	8, 61, 233
CviJI	RGCY	6 cut(s)	59, 67, 72, 130, 164, 353
CviKI_1	RGCY	6 cut(s)	59, 67, 72, 130, 164, 353
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	333, 372
DpnII	GATC	2 cut(s)	331, 370
Eam1104I	CTCTTC	2 cut(s)	34, 282
EarI	CTCTTC	2 cut(s)	34, 282
Eco130I	CCWWGG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	3 cut(s)	11, 64, 236
FaiI	YATR	4 cut(s)	9, 56, 62, 234
FatI	CATG	3 cut(s)	7, 60, 232
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	159, 326
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	3 cut(s)	11, 64, 236
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	2 cut(s)	166, 304
Hpy166II	GTNNAC	4 cut(s)	115, 174, 295, 304
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	36, 262
Hpy8I	GTNNAC	4 cut(s)	115, 174, 295, 304
HpyCH4III	ACNGT	2 cut(s)	221, 308
HpyCH4V	TGCA	3 cut(s)	232, 304, 320
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	11, 64, 236
Kzo9I	GATC	2 cut(s)	331, 370
LmnI	GCTCC	2 cut(s)	4, 64
LpnPI	CCDG	6 cut(s)	53, 65, 92, 99, 203, 222
Lsp1109I	GCAGC	1 cut(s)	332
MaeI	CTAG	2 cut(s)	159, 326
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	333, 372
MboI	GATC	2 cut(s)	331, 370
MboII	GAAGA	5 cut(s)	51, 178, 215, 299, 365
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	5 cut(s)	140, 144, 180, 252, 384
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	35, 283, 322
Mph1103I	ATGCAT	1 cut(s)	234
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	2 cut(s)	80, 191
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	80
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	331, 370
NlaIII	CATG	3 cut(s)	11, 64, 236
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	331, 370
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	80, 191
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	3 cut(s)	69, 166, 294
SfuI	TTCGAA	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	140, 144, 180, 252, 384
SspMI	CTAG	2 cut(s)	159, 326
StyD4I	CCNGG	2 cut(s)	78, 189
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	221, 308
TaqI	TCGA	3 cut(s)	35, 339, 376
TasI	AATT	5 cut(s)	140, 144, 180, 252, 384
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	362
TspRI	CASTG	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	79
VneI	GTGCAC	1 cut(s)	302
VspI	ATTAAT	1 cut(s)	143
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	2 cut(s)	159, 326
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.