Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006124

Physical Location & Seq

Genomic Coordinates Forward (+)

41464022 .. 41465705

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG230400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAGAATGGCTATCCCCTGGTTTCAGTTTTGTGCTTTGGTCAGTGGGGGGAGTTATTCCTGAAGTTTGCTAGAGCTATCAGATTCACCCCTCTTTCGGGGAATGTTTGGGAGGAGCAAAAGCAATTCATGTACCAACAAAAGATGAATGCTTGGCTGGAATCACCATTAGGGTGGAAGCTTTGGGATCAGAGCACTCAATGGCTGTTATTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0031984 GO:0034389 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:0071840 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko04975 map00561 map04975

Pfam Domains

Protein Families

DAGAT

Protein Analysis

72

Amino Acids

8.61

Weight (kDa)

6.11

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51520
fragaria_vesca	FvH4_1g09760 FvH4_1g09760
malus_domestica	MD02G1107700.v1.1 MD02G1107800.v1.1 MD15G1227200.v1.1
prunus_persica	Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1
pyrus_communis	pycom02g08660 pycom15g20210
rosa_chinensis	RchiOBHm_Chr2g0096691
rosa_laevigata	RLG00000016662 RLG00000036260
rosa_multiflora	Rmu_sc0003565.1_g000021
rosa_roxburghii	Rroxscaffold_2G00145410 Rroxscaffold_6G00397690
rosa_rugosa	Rorug02G0059600 Rorug02G0059700 Rorug04G0089100
rosa_samantha	Rh2AG107100 Rh2BG109500 Rh2CG111300 Rh2DG110900 Rh5BG533300 Rh6AG230400
rosa_wichuraiana	Rw2G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	97, 98
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	2 cut(s)	77, 181
AluI	AGCT	2 cut(s)	77, 181
Alw21I	GWGCWC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	79, 156
Bbv12I	GWGCWC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 98
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	97, 98
BseRI	GAGGAG	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	97, 98
BsmI	GAATGC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	20
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	5 cut(s)	12, 77, 157, 181, 205
CviKI_1	RGCY	5 cut(s)	12, 77, 157, 181, 205
CviQI	GTAC	1 cut(s)	133
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	133
FaiI	YATR	2 cut(s)	131, 217
FatI	CATG	1 cut(s)	129
FspBI	CTAG	1 cut(s)	72
Hin1II	CATG	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	2 cut(s)	84, 161
HphI	GGTGA	2 cut(s)	79, 156
Hpy188I	TCNGA	2 cut(s)	83, 192
Hpy188III	TCNNGA	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	5, 32, 74, 143
MaeI	CTAG	1 cut(s)	72
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	1 cut(s)	125
MnlI	CCTC	2 cut(s)	102, 106
MslI	CAYNNNNRTG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	20
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	133
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	84, 161
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	172
Sau3AI	GATC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	2 cut(s)	79, 183
SgeI	CNNG	8 cut(s)	31, 32, 73, 84, 111, 142, 165, 170
SmiMI	CAYNNNNRTG	1 cut(s)	172
Sse9I	AATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	18
TasI	AATT	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	84, 161
TscAI	CASTG	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	118, 161
TspRI	CASTG	1 cut(s)	50
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.