Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006124

Physical Location & Seq

Genomic Coordinates Forward (+)

9796130 .. 9799937

Gene Structure 3808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG111300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTGGAGATGAAGCAGGAAGAAGAGAAGGAGGGAATGACGATAATCAAAGGAAAAGAAGCTATCGGATTGAGAATCGTGAACATGTTTGTGGCGATGGGTTTGTGGCTTGGAGCTATTCATTTCAACGTGGCTTTGATTCTCTTCACTGTTTGCTTCCTTCCTATTTCCAAGGCCATATTGGTATTTGGGTTGCTTGTGTTGTTTATGATAATCCCAGTTGATGATAAGAGCAAAATAGGAAGAAAAGTGGCCAGGTACATATGTAAGTATGCCTGTGGTTATTTTCCAGTGACTTTGTATGTAGAGGAAAAACACGTCTTTGATCCTAATTGCTCTTATGTCTTTGGGTATGAACCACATTCAGTTTTGCCAATTGGTGTAGTTGCACTGGCTGACATGACTGGGTTCTTGGGTCTCCCTAAGATGAAGGTCCTTGCGAGTACTGCTGTGTTCTATACACCATTCCTAAGGCATATATGGACATGGTTGGGTCTTACACCAGCCACAAAGAGTAATTTTATCTCCAACTTGGCCGCTGGTTATAGTTGCGTCATTGTGCCTGGTGGAGTGCGGGAGACATTTCTTATGGAGCATGGTAAAGAGAAAGTATTCCTTAGTACAAGAAGAGGATTTGTTCGCATAGCCATGGAGAATGGTTATCCCCTGGTTCCAGTTTTCTGCTTTGGTCAGGTATCACCTTCTTATGATCTGGTTTTTCATGGTATACCTAGAGAGTTATTAGTTTCAATTCTTGCTGCAGTTGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0031984 GO:0034389 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:0071840 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko04975 map00561 map04975

Pfam Domains

Protein Families

DAGAT

Protein Analysis

257

Amino Acids

28.63

Weight (kDa)

8.83

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGAT	PF03982	51 - 231	1.4e-47	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51520
fragaria_vesca	FvH4_1g09760 FvH4_1g09760
malus_domestica	MD02G1107700.v1.1 MD02G1107800.v1.1 MD15G1227200.v1.1
prunus_persica	Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1
pyrus_communis	pycom02g08660 pycom15g20210
rosa_chinensis	RchiOBHm_Chr2g0096691
rosa_laevigata	RLG00000016662 RLG00000036260
rosa_multiflora	Rmu_sc0003565.1_g000021
rosa_roxburghii	Rroxscaffold_2G00145410 Rroxscaffold_6G00397690
rosa_rugosa	Rorug02G0059600 Rorug02G0059700 Rorug04G0089100
rosa_samantha	Rh2AG107100 Rh2BG109500 Rh2CG111300 Rh2DG110900 Rh5BG533300 Rh6AG230400
rosa_wichuraiana	Rw2G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	727
AciI	CCGC	2 cut(s)	537, 574
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	2 cut(s)	252, 534
AfaI	GTAC	3 cut(s)	260, 445, 622
AflIII	ACRYGT	2 cut(s)	84, 316
AgsI	TTSAA	2 cut(s)	127, 750
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	3 cut(s)	254, 562, 666
AluBI	AGCT	2 cut(s)	62, 116
AluI	AGCT	2 cut(s)	62, 116
Alw26I	GTCTC	2 cut(s)	422, 572
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	3 cut(s)	174, 252, 534
ApeKI	GCWGC	1 cut(s)	758
Asp700I	GAANNNNTTC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	690
AvaII	GGWCC	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BalI	TGGCCA	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	3 cut(s)	256, 564, 668
BcoDI	GTCTC	2 cut(s)	422, 572
BfaI	CTAG	1 cut(s)	732
BfmI	CTRYAG	1 cut(s)	759
BisI	GCNGC	2 cut(s)	537, 759
BlsI	GCNGC	2 cut(s)	538, 760
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	3 cut(s)	256, 564, 668
Bme18I	GGWCC	1 cut(s)	433
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	3 cut(s)	256, 564, 668
BmrI	ACTGGG	2 cut(s)	212, 414
BmuI	ACTGGG	2 cut(s)	212, 414
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	171, 648, 666
Bse1I	ACTGG	5 cut(s)	218, 290, 396, 409, 674
Bse21I	CCTNAGG	1 cut(s)	470
BseBI	CCWGG	3 cut(s)	256, 564, 668
BseDI	CCNNGG	3 cut(s)	171, 648, 666
BseNI	ACTGG	5 cut(s)	218, 290, 396, 409, 674
BseXI	GCAGC	1 cut(s)	745
BshFI	GGCC	3 cut(s)	176, 254, 536
BsmAI	GTCTC	2 cut(s)	422, 572
BsnI	GGCC	3 cut(s)	176, 254, 536
Bso31I	GGTCTC	1 cut(s)	422
Bsp143I	GATC	2 cut(s)	325, 709
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	2 cut(s)	537, 574
BspANI	GGCC	3 cut(s)	176, 254, 536
BspLI	GGNNCC	1 cut(s)	672
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	422
BsrI	ACTGG	5 cut(s)	218, 290, 396, 409, 674
BssECI	CCNNGG	3 cut(s)	171, 648, 666
BssMI	GATC	2 cut(s)	325, 709
BssNAI	GTATAC	1 cut(s)	728
BssT1I	CCWWGG	2 cut(s)	171, 648
Bst1107I	GTATAC	1 cut(s)	728
Bst2UI	CCWGG	3 cut(s)	256, 564, 668
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	3 cut(s)	18, 149, 622
BstDEI	CTNAG	3 cut(s)	423, 470, 617
BstDSI	CCRYGG	1 cut(s)	648
BstKTI	GATC	2 cut(s)	328, 712
BstMAI	GTCTC	2 cut(s)	422, 572
BstMBI	GATC	2 cut(s)	325, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	3 cut(s)	256, 564, 668
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	3 cut(s)	254, 562, 666
BstSFI	CTRYAG	1 cut(s)	759
BstV1I	GCAGC	1 cut(s)	745
BstZ17I	GTATAC	1 cut(s)	728
Bsu36I	CCTNAGG	1 cut(s)	470
BsuRI	GGCC	3 cut(s)	176, 254, 536
BtgI	CCRYGG	1 cut(s)	648
BtgZI	GCGATG	1 cut(s)	110
BtrI	CACGTC	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	147, 297, 389
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	3 cut(s)	259, 444, 621
CviAII	CATG	6 cut(s)	85, 400, 486, 596, 649, 722
CviQI	GTAC	3 cut(s)	259, 444, 621
DdeI	CTNAG	3 cut(s)	423, 470, 617
DpnI	GATC	2 cut(s)	327, 711
DpnII	GATC	2 cut(s)	325, 709
EaeI	YGGCCR	2 cut(s)	252, 534
Eam1104I	CTCTTC	3 cut(s)	18, 149, 622
EarI	CTCTTC	3 cut(s)	18, 149, 622
Eco130I	CCWWGG	2 cut(s)	171, 648
Eco31I	GGTCTC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	433
Eco81I	CCTNAGG	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRII	CCWGG	3 cut(s)	254, 562, 666
EcoT14I	CCWWGG	2 cut(s)	171, 648
ErhI	CCWWGG	2 cut(s)	171, 648
FaeI	CATG	6 cut(s)	88, 403, 489, 599, 652, 725
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FatI	CATG	6 cut(s)	84, 399, 485, 595, 648, 721
FauI	CCCGC	1 cut(s)	567
FauNDI	CATATG	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	727
Fnu4HI	GCNGC	2 cut(s)	537, 759
Fsp4HI	GCNGC	2 cut(s)	537, 759
FspBI	CTAG	1 cut(s)	732
GluI	GCNGC	2 cut(s)	537, 759
HaeIII	GGCC	3 cut(s)	176, 254, 536
HgaI	GACGC	1 cut(s)	541
Hin1II	CATG	6 cut(s)	88, 403, 489, 599, 652, 725
HinfI	GANTC	2 cut(s)	75, 139
HphI	GGTGA	1 cut(s)	690
Hpy166II	GTNNAC	2 cut(s)	82, 728
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	82, 728
HpyAV	CCTTC	4 cut(s)	22, 170, 424, 711
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	2 cut(s)	129, 318
HpyCH4V	TGCA	2 cut(s)	389, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	423, 470, 617
HpySE526I	ACGT	2 cut(s)	129, 318
Hsp92II	CATG	6 cut(s)	88, 403, 489, 599, 652, 725
Kzo9I	GATC	2 cut(s)	325, 709
LmnI	GCTCC	2 cut(s)	113, 592
Lsp1109I	GCAGC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	2 cut(s)	129, 318
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	327, 711
MboI	GATC	2 cut(s)	325, 709
MboII	GAAGA	5 cut(s)	32, 35, 136, 255, 639
MfeI	CAATTG	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	4 cut(s)	331, 375, 517, 750
MluNI	TGGCCA	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	3 cut(s)	25, 301, 623
Mox20I	TGGCCA	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	254
MslI	CAYNNNNRTG	2 cut(s)	89, 647
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	539
MspR9I	CCNGG	3 cut(s)	256, 564, 668
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	3 cut(s)	256, 564, 668
MwoI	GCNNNNNNNGC	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	648
NdeI	CATATG	1 cut(s)	263
NdeII	GATC	2 cut(s)	325, 709
NlaIII	CATG	6 cut(s)	88, 403, 489, 599, 652, 725
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	88
PciI	ACATGT	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	2 cut(s)	75, 139
PkrI	GCNGC	2 cut(s)	538, 760
PpuMI	RGGWCCY	1 cut(s)	433
PscI	ACATGT	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	433
Psp6I	CCWGG	3 cut(s)	254, 562, 666
PspGI	CCWGG	3 cut(s)	254, 562, 666
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	1 cut(s)	433
PspPPI	RGGWCCY	1 cut(s)	433
PstI	CTGCAG	1 cut(s)	763
RsaI	GTAC	3 cut(s)	260, 445, 622
RsaNI	GTAC	3 cut(s)	259, 444, 621
RseI	CAYNNNNRTG	2 cut(s)	89, 647
SatI	GCNGC	2 cut(s)	537, 759
Sau3AI	GATC	2 cut(s)	325, 709
Sau96I	GGNCC	1 cut(s)	433
ScaI	AGTACT	1 cut(s)	445
ScrFI	CCNGG	3 cut(s)	256, 564, 668
SetI	ASST	9 cut(s)	64, 118, 132, 260, 321, 435, 696, 703, 733
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	89, 647
Sse9I	AATT	4 cut(s)	331, 375, 517, 750
SsiI	CCGC	2 cut(s)	537, 574
SspMI	CTAG	1 cut(s)	732
StyD4I	CCNGG	3 cut(s)	254, 562, 666
StyI	CCWWGG	2 cut(s)	171, 648
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	2 cut(s)	132, 321
TasI	AATT	4 cut(s)	331, 375, 517, 750
TatI	WGTACW	2 cut(s)	443, 620
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	75, 139
TscAI	CASTG	3 cut(s)	154, 297, 396
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	758
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	5 cut(s)	26, 110, 369, 443, 710
TspRI	CASTG	3 cut(s)	154, 297, 396
VpaK11BI	GGWCC	1 cut(s)	433
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	1 cut(s)	732
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.