Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006124

Physical Location & Seq

Genomic Coordinates Reverse (-)

78155087 .. 78157072

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGGACAACATCATTGCTGGTAATGAGGCAGAAGTCTGGTGCACTAAAAGTATTCCTTAAGACGAGAAGAGGATTTGTTCGCATAGCCATGGAGAATGGCTATCCCCTGGTTTCAGTTTTGTGCTTTGGTCAATGGGGGGAGTTATTCCTGAAGTTTGCTAGAGCTATCAGATTCACCCCTATTGTCTTTCGGGGAATGTTTGGGCTTGCTTCTTTTCCAGCTCCTCGCTTAAAAATATGTGATTTTGGGTACTCAAAGGAGGAGCAAAAGCAGTTCATGTACCAACAAAAGCTGAATGCTTGGCTGGAATCACCATTAGGATGGAAGCTTTGGGATCAGAGCACTCAATGGCTGTTATTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0031984 GO:0034389 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:0071840 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko04975 map00561 map04975

Pfam Domains

Protein Families

DAGAT

Protein Analysis

123

Amino Acids

14.19

Weight (kDa)

10.15

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGAT	PF03982	11 - 45	3.3e-07	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51520
fragaria_vesca	FvH4_1g09760 FvH4_1g09760
malus_domestica	MD02G1107700.v1.1 MD02G1107800.v1.1 MD15G1227200.v1.1
prunus_persica	Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1
pyrus_communis	pycom02g08660 pycom15g20210
rosa_chinensis	RchiOBHm_Chr2g0096691
rosa_laevigata	RLG00000016662 RLG00000036260
rosa_multiflora	Rmu_sc0003565.1_g000021
rosa_roxburghii	Rroxscaffold_2G00145410 Rroxscaffold_6G00397690
rosa_rugosa	Rorug02G0059600 Rorug02G0059700 Rorug04G0089100
rosa_samantha	Rh2AG107100 Rh2BG109500 Rh2CG111300 Rh2DG110900 Rh5BG533300 Rh6AG230400
rosa_wichuraiana	Rw2G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	254, 284
AflII	CTTAAG	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	4 cut(s)	167, 224, 295, 331
AluI	AGCT	4 cut(s)	167, 224, 295, 331
Alw21I	GWGCWC	2 cut(s)	46, 347
Alw44I	GTGCAC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	345
ApaLI	GTGCAC	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	169, 306
BaeGI	GKGCMC	1 cut(s)	46
Bbv12I	GWGCWC	2 cut(s)	46, 347
BccI	CCATC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	90, 108
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	90, 108
BseGI	GGATG	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	14
BseRI	GAGGAG	2 cut(s)	216, 278
BseSI	GKGCMC	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	46, 347
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	46, 347
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	345
BspTI	CTTAAG	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	90, 108
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	329
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	253, 283
CviAII	CATG	2 cut(s)	91, 280
CviJI	RGCY	9 cut(s)	89, 102, 167, 208, 224, 295, 307, 331, 355
CviKI_1	RGCY	9 cut(s)	89, 102, 167, 208, 224, 295, 307, 331, 355
CviQI	GTAC	2 cut(s)	253, 283
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	94, 283
FaiI	YATR	5 cut(s)	86, 92, 241, 281, 367
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	90, 279
FokI	GGATG	1 cut(s)	336
FspBI	CTAG	1 cut(s)	162
Hin1II	CATG	2 cut(s)	94, 283
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	2 cut(s)	174, 311
HphI	GGTGA	2 cut(s)	169, 306
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	173, 342
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	94, 283
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	229, 265
LpnPI	CCDG	7 cut(s)	5, 24, 95, 122, 164, 234, 293
MaeI	CTAG	1 cut(s)	162
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	46, 347
MnlI	CCTC	4 cut(s)	21, 65, 237, 256
MseI	TTAA	2 cut(s)	60, 233
MslI	CAYNNNNRTG	2 cut(s)	89, 322
MspCI	CTTAAG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	94, 283
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	174, 311
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
RsaI	GTAC	2 cut(s)	254, 284
RsaNI	GTAC	2 cut(s)	253, 283
RseI	CAYNNNNRTG	2 cut(s)	89, 322
SaqAI	TTAA	2 cut(s)	60, 233
Sau3AI	GATC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	46, 347
SetI	ASST	4 cut(s)	169, 226, 297, 333
SmiMI	CAYNNNNRTG	2 cut(s)	89, 322
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	174, 311
Tru1I	TTAA	2 cut(s)	60, 233
Tru9I	TTAA	2 cut(s)	60, 233
TspDTI	ATGAA	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.