Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006124

Physical Location & Seq

Genomic Coordinates Reverse (-)

83946576 .. 83955696

Gene Structure 9121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG533300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATAATTGGTCATGAGGGACCTTTGGGCTTCATCCCAAAATTTGGAAGGCTAGGATCTTGGAATGTGATCATGCAGGCTAAGAAGTTCATGAAAAGGGACTCGCTGGACACTCTAGAGTGTGCCATGTTGCCAACAACTAGGTATTACGACAAGTGTCCAATTGGGAATGTAGTGGATGTTGGGTGTGGGATTGGAGGGAGCTCCAGATATCTGGTTAGCAAATACGGGGCCAATTGCAAAGGGATTACTCTGAGCCCCGTACAGGCTCAGAGGGCCACTGGTCTTGCTGCTGCTCAAGGCCTAGCCAATAAGAAAGTATTCCTTAGGACGAGAAGAGGATTTGTTCGCATAGCCATGGAGAATGGCTATCCCATGATTTCAGTTTTCTGCTTTGGTCAGTGGGGGGAGTTATTCCTGAAGTTTGCTAGAGCTATCAGATTCACCCCTATTGTCTTTCGGGGAATGTTTGGGCTTGCTTCTTTTCCAGCTCCTCGCTTAAAAATATGTGATTTTGGGTACTCACAGGTATTATTCTTTGTTTTTTATTTGTTACTTATCCTTTTCTTTTGGATAATGTCTTTGTTACTATTACCTAATGTATACTTTGTGTCCACACTTTTAATAGAAAGAAAAGAAGCTCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0010189 GO:0016740 GO:0016741 GO:0018130 GO:0032259 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050342 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

216

Amino Acids

24.29

Weight (kDa)

9.88

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMAS	PF02353	57 - 106	5.4e-07	Mycolic acid cyclopropane synthetase
DAGAT	PF03982	104 - 134	2.7e-06	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51520
fragaria_vesca	FvH4_1g09760 FvH4_1g09760
malus_domestica	MD02G1107700.v1.1 MD02G1107800.v1.1 MD15G1227200.v1.1
prunus_persica	Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1
pyrus_communis	pycom02g08660 pycom15g20210
rosa_chinensis	RchiOBHm_Chr2g0096691
rosa_laevigata	RLG00000016662 RLG00000036260
rosa_multiflora	Rmu_sc0003565.1_g000021
rosa_roxburghii	Rroxscaffold_2G00145410 Rroxscaffold_6G00397690
rosa_rugosa	Rorug02G0059600 Rorug02G0059700 Rorug04G0089100
rosa_samantha	Rh2AG107100 Rh2BG109500 Rh2CG111300 Rh2DG110900 Rh5BG533300 Rh6AG230400
rosa_wichuraiana	Rw2G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	603
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	264, 521
AfiI	CCNNNNNNNGG	2 cut(s)	44, 265
AluBI	AGCT	5 cut(s)	204, 434, 491, 641, 648
AluI	AGCT	5 cut(s)	204, 434, 491, 641, 648
Alw21I	GWGCWC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	3 cut(s)	231, 276, 301
ApeKI	GCWGC	2 cut(s)	290, 293
ApoI	RAATTY	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	320
AspS9I	GGNCC	3 cut(s)	20, 231, 276
AsuHPI	GGTGA	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	206, 260
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	277, 280
BclI	TGATCA	1 cut(s)	69
BfaI	CTAG	6 cut(s)	53, 116, 141, 305, 429, 649
BisI	GCNGC	2 cut(s)	291, 294
BlsI	GCNGC	2 cut(s)	292, 295
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	3 cut(s)	20, 231, 276
BmiI	GGNNCC	2 cut(s)	21, 232
BoxI	GACNNNNGTC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 265
Bse1I	ACTGG	1 cut(s)	286
Bse21I	CCTNAGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	33, 184
BseLI	CCNNNNNNNGG	2 cut(s)	44, 265
BseMII	CTCAG	2 cut(s)	245, 284
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	277, 280
BshFI	GGCC	3 cut(s)	233, 278, 303
BsiHKAI	GWGCWC	1 cut(s)	206
BslFI	GGGAC	2 cut(s)	33, 113
BslI	CCNNNNNNNGG	2 cut(s)	44, 265
BsmFI	GGGAC	2 cut(s)	33, 113
BsnI	GGCC	3 cut(s)	233, 278, 303
Bsp1286I	GDGCHC	2 cut(s)	206, 260
Bsp143I	GATC	2 cut(s)	56, 69
Bsp19I	CCATGG	1 cut(s)	357
BspANI	GGCC	3 cut(s)	233, 278, 303
BspCNI	CTCAG	2 cut(s)	246, 283
BspHI	TCATGA	2 cut(s)	13, 90
BspLI	GGNNCC	2 cut(s)	21, 232
BspPI	GGATC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	56, 69
BssNAI	GTATAC	1 cut(s)	604
BssT1I	CCWWGG	1 cut(s)	357
Bst1107I	GTATAC	1 cut(s)	604
Bst6I	CTCTTC	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	78, 477
BstDEI	CTNAG	4 cut(s)	81, 254, 270, 326
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	33, 184
BstKTI	GATC	2 cut(s)	59, 72
BstMBI	GATC	2 cut(s)	56, 69
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstPAI	GACNNNNGTC	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	277, 280
BstX2I	RGATCY	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	56
BstZ17I	GTATAC	1 cut(s)	604
Bsu36I	CCTNAGG	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	233, 278, 303
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	33, 184
BtsIMutI	CAGTG	2 cut(s)	279, 407
Cac8I	GCNNGC	2 cut(s)	78, 477
CciI	TCATGA	2 cut(s)	13, 90
Cfr13I	GGNCC	3 cut(s)	20, 231, 276
Csp6I	GTAC	2 cut(s)	263, 520
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	6 cut(s)	14, 73, 91, 127, 358, 376
CviQI	GTAC	2 cut(s)	263, 520
DdeI	CTNAG	4 cut(s)	81, 254, 270, 326
DpnI	GATC	2 cut(s)	58, 71
DpnII	GATC	2 cut(s)	56, 69
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	206, 260
Eco32I	GATATC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	440
Eco81I	CCTNAGG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	206, 260
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	6 cut(s)	17, 76, 94, 130, 361, 379
FaiI	YATR	9 cut(s)	15, 74, 92, 128, 353, 359, 377, 508, 604
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	2 cut(s)	33, 113
FatI	CATG	6 cut(s)	13, 72, 90, 126, 357, 375
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	2 cut(s)	291, 294
FokI	GGATG	2 cut(s)	20, 191
FriOI	GRGCYC	2 cut(s)	206, 260
Fsp4HI	GCNGC	2 cut(s)	291, 294
FspBI	CTAG	6 cut(s)	53, 116, 141, 305, 429, 649
GluI	GCNGC	2 cut(s)	291, 294
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	233, 278, 303
Hin1II	CATG	6 cut(s)	17, 76, 94, 130, 361, 379
HinfI	GANTC	2 cut(s)	101, 441
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	604, 615
Hpy188I	TCNGA	3 cut(s)	255, 273, 440
Hpy188III	TCNNGA	5 cut(s)	14, 91, 116, 207, 418
Hpy8I	GTNNAC	2 cut(s)	604, 615
HpyAV	CCTTC	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	76, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	4 cut(s)	81, 254, 270, 326
Hsp92II	CATG	6 cut(s)	17, 76, 94, 130, 361, 379
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	56, 69
LmnI	GCTCC	3 cut(s)	201, 209, 496
LpnPI	CCDG	9 cut(s)	62, 92, 200, 220, 251, 267, 431, 501, 512
Lsp1109I	GCAGC	2 cut(s)	277, 280
MaeI	CTAG	6 cut(s)	53, 116, 141, 305, 429, 649
MaeIII	GTNAC	2 cut(s)	552, 585
MalI	GATC	2 cut(s)	58, 71
MboI	GATC	2 cut(s)	56, 69
MboII	GAAGA	1 cut(s)	348
MfeI	CAATTG	2 cut(s)	162, 235
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	206, 260
MluCI	AATT	4 cut(s)	6, 41, 162, 235
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	10, 191, 267, 332, 504
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	2 cut(s)	500, 623
MslI	CAYNNNNRTG	1 cut(s)	356
MunI	CAATTG	2 cut(s)	162, 235
MwoI	GCNNNNNNNGC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	2 cut(s)	56, 69
NlaIII	CATG	6 cut(s)	17, 76, 94, 130, 361, 379
NlaIV	GGNNCC	2 cut(s)	21, 232
PagI	TCATGA	2 cut(s)	13, 90
PceI	AGGCCT	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	441
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	292, 295
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	20
PshAI	GACNNNNGTC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	21, 232
PspPI	GGNCC	3 cut(s)	20, 231, 276
PspPPI	RGGWCCY	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	2 cut(s)	264, 521
RsaNI	GTAC	2 cut(s)	263, 520
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	500, 623
SatI	GCNGC	2 cut(s)	291, 294
Sau3AI	GATC	2 cut(s)	56, 69
Sau96I	GGNCC	3 cut(s)	20, 231, 276
SchI	GAGTC	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	206, 260
SetI	ASST	9 cut(s)	25, 146, 206, 436, 493, 531, 598, 643, 650
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	4 cut(s)	6, 41, 162, 235
SseBI	AGGCCT	1 cut(s)	303
SspMI	CTAG	6 cut(s)	53, 116, 141, 305, 429, 649
SstI	GAGCTC	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	357
TasI	AATT	4 cut(s)	6, 41, 162, 235
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	2 cut(s)	500, 623
Tru9I	TTAA	2 cut(s)	500, 623
TscAI	CASTG	2 cut(s)	286, 407
TseI	GCWGC	2 cut(s)	290, 293
TspDTI	ATGAA	3 cut(s)	22, 79, 107
TspRI	CASTG	2 cut(s)	286, 407
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	41
XbaI	TCTAGA	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	6 cut(s)	53, 116, 141, 305, 429, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.