Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006124

Physical Location & Seq

Genomic Coordinates Reverse (-)

19395093 .. 19396197

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGAGAATGGCTATCCCCCGGTTTCAGTTTTCTGCTTTGGTCAGTCAAATGTTTATAAGTGGTGGAAGCCAAGTGGGGAGTTATTCCCGAAGTTTGGTAGAGCTATCGGATTCACCCTTATTGCCTTCCGGGAATGTTTGGGTATGTATTTAGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0031984 GO:0034389 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:0071840 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko04975 map00561 map04975

Pfam Domains

Protein Families

DAGAT

Protein Analysis

53

Amino Acids

6.08

Weight (kDa)

8.74

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51520
fragaria_vesca	FvH4_1g09760 FvH4_1g09760
malus_domestica	MD02G1107700.v1.1 MD02G1107800.v1.1 MD15G1227200.v1.1
prunus_persica	Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1 Prupe.7G188100_v2.0.a1
pyrus_communis	pycom02g08660 pycom15g20210
rosa_chinensis	RchiOBHm_Chr2g0096691
rosa_laevigata	RLG00000016662 RLG00000036260
rosa_multiflora	Rmu_sc0003565.1_g000021
rosa_roxburghii	Rroxscaffold_2G00145410 Rroxscaffold_6G00397690
rosa_rugosa	Rorug02G0059600 Rorug02G0059700 Rorug04G0089100
rosa_samantha	Rh2AG107100 Rh2BG109500 Rh2CG111300 Rh2DG110900 Rh5BG533300 Rh6AG230400
rosa_wichuraiana	Rw2G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AsuC2I	CCSGG	2 cut(s)	20, 131
AsuHPI	GGTGA	1 cut(s)	106
BcnI	CCSGG	2 cut(s)	20, 131
Bme1390I	CCNGG	2 cut(s)	20, 131
BmrFI	CCNGG	2 cut(s)	20, 131
BpuMI	CCSGG	2 cut(s)	20, 131
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	20, 130
BslI	CCNNNNNNNGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	18, 129
CviJI	RGCY	3 cut(s)	12, 70, 104
CviKI_1	RGCY	3 cut(s)	12, 70, 104
FaiI	YATR	2 cut(s)	57, 146
HapII	CCGG	2 cut(s)	20, 130
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	2 cut(s)	20, 130
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	136
LpnPI	CCDG	2 cut(s)	33, 143
MspI	CCGG	2 cut(s)	20, 130
MspR9I	CCNGG	2 cut(s)	20, 131
NciI	CCSGG	2 cut(s)	20, 131
PfeI	GAWTC	1 cut(s)	111
PfoI	TCCNGGA	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	57
ScrFI	CCNGG	2 cut(s)	20, 131
SetI	ASST	1 cut(s)	106
SgeI	CNNG	6 cut(s)	31, 32, 84, 100, 142, 143
StyD4I	CCNGG	2 cut(s)	18, 129
TfiI	GAWTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.