Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Reverse (-)

6952864 .. 6955196

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10050.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGATTCACCAACAGTTCAGTCCATGGATCTATCAGGTTACTAGACTTTACAGAGACAAAGGGCATGCCGAAGTTGAATATACGATCGGTCCTATTCCCACAGACGACGGTGTTGGAAAGGAGGTCGATCACAAGAATGACAGCAAACATGGACACAAACAAGGAGGTCGACACCTATTCTAACGGAAGGGATTTCATTAAACGGGTACGAGATTATAGACCAGACTGGCCCCTTGTGGTTAATCAACCTGTGGCAGGAAACTATTATCCTCTAAATCTTGGAATGTTTACTTCGGATAACAAATCCGAGTTCTCAGTCTTGGTTGATCGTGCCAATGGAGGATCAAGCATTGAAGATGGACAAATTGAGATGATGCTTCACAGGCGTATACTTGAGGATGATTCGAGAGGAGTGGGTGAAGCACTTGATGAAACAGTGTGCATCGAAGAAAATACATGCGAAGGACTAACGGTTCGAGGGAACTATTATATGAGCGTAAACCAGGCAGGGTCGGGTGCCCCCTGGCGCCGCACAACTGGCCAGGAAGTTTACTCTCCGCTTCTTCTAGCATTCGCCCACGAGAAAATGGAGGATTGGACTGCGTCACATTTGACAAAATCATCTACCATGGATTCTAATTACAGCTTGCCTCTCAATGTTGCTTTGATTACTCTTCAGGAACTGGATGACGGTACTGTGCTCCTTCGGTTAGCTCATCTATATGAGGCAGCCGAAGATCCTCAATATTCAACACTGGCCAAAGTTGAACTGAAGAAGATGTTTAGAGGAAAAACGATAAAAGAGGTGAAGGAAGTGAGCTTGTCTGCAAACCAAGAGAAGTCGGAGATGAAGAAGATGACATGGAAAGTCGAGGGTGACGGGGGAGATGAACCTGCACCGGTTAGAGGGGGGCCTGTCGATAGCTCAGCTCTTGTTGTTGAGCTTGGAACCATGGAGATCCGCACCTTCGTGTTGAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0015923 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

329

Amino Acids

36.84

Weight (kDa)

5.35

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	904
AccB1I	GGYRCC	2 cut(s)	518, 528
AccI	GTMKAC	2 cut(s)	171, 391
AciI	CCGC	3 cut(s)	532, 560, 964
AclWI	GGATC	4 cut(s)	37, 352, 734, 955
AcoI	YGGCCR	2 cut(s)	541, 759
AcsI	RAATTY	1 cut(s)	980
AcuI	CTGAAG	2 cut(s)	662, 794
AcyI	GRCGYC	1 cut(s)	529
AfaI	GTAC	2 cut(s)	210, 697
AfiI	CCNNNNNNNGG	2 cut(s)	257, 908
AgeI	ACCGGT	1 cut(s)	901
AgsI	TTSAA	5 cut(s)	79, 356, 753, 770, 979
AjnI	CCWGG	3 cut(s)	504, 524, 543
AleI	CACNNNNGTG	1 cut(s)	971
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	6 cut(s)	648, 716, 822, 927, 932, 946
AluI	AGCT	6 cut(s)	648, 716, 822, 927, 932, 946
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	4 cut(s)	37, 352, 734, 955
AlwNI	CAGNNNCTG	1 cut(s)	685
AoxI	GGCC	4 cut(s)	230, 541, 759, 914
ApeKI	GCWGC	1 cut(s)	731
ApoI	RAATTY	1 cut(s)	980
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
AsiGI	ACCGGT	1 cut(s)	901
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	3 cut(s)	91, 231, 914
AsuHPI	GGTGA	3 cut(s)	431, 820, 890
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	523
BalI	TGGCCA	2 cut(s)	543, 761
BanI	GGYRCC	2 cut(s)	518, 528
BauI	CACGAG	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	1 cut(s)	743
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	3 cut(s)	506, 526, 545
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	2 cut(s)	44, 569
BfoI	RGCGCY	1 cut(s)	532
BfuAI	ACCTGC	1 cut(s)	904
BisI	GCNGC	2 cut(s)	532, 732
BlpI	GCTNAGC	1 cut(s)	928
BlsI	GCNGC	2 cut(s)	533, 733
Bme1390I	CCNGG	3 cut(s)	506, 526, 545
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	91, 231, 914
BmiI	GGNNCC	5 cut(s)	233, 520, 530, 915, 952
BmrFI	CCNGG	3 cut(s)	506, 526, 545
BmsI	GCATC	2 cut(s)	366, 453
Bpu1102I	GCTNAGC	1 cut(s)	928
BpuEI	CTTGAG	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	529
BsaJI	CCNNGG	4 cut(s)	25, 524, 630, 954
BsaWI	WCCGGW	1 cut(s)	901
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 908
Bse118I	RCCGGY	1 cut(s)	901
Bse1I	ACTGG	4 cut(s)	233, 544, 690, 762
BseBI	CCWGG	3 cut(s)	506, 526, 545
BseDI	CCNNGG	4 cut(s)	25, 524, 630, 954
BseGI	GGATG	2 cut(s)	406, 694
BseLI	CCNNNNNNNGG	2 cut(s)	257, 908
BseMII	CTCAG	2 cut(s)	330, 942
BseNI	ACTGG	4 cut(s)	233, 544, 690, 762
BseRI	GAGGAG	1 cut(s)	426
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	1 cut(s)	743
BsgI	GTGCAG	1 cut(s)	882
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	4 cut(s)	232, 543, 761, 916
BshNI	GGYRCC	2 cut(s)	518, 528
BshTI	ACCGGT	1 cut(s)	901
BsiEI	CGRYCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	1 cut(s)	902
BslI	CCNNNNNNNGG	2 cut(s)	257, 908
BsmAI	GTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	4 cut(s)	232, 543, 761, 916
Bsp1286I	GDGCHC	2 cut(s)	523, 705
Bsp143I	GATC	7 cut(s)	29, 86, 129, 328, 344, 739, 960
Bsp1720I	GCTNAGC	1 cut(s)	928
Bsp19I	CCATGG	3 cut(s)	25, 630, 954
BspACI	CCGC	3 cut(s)	532, 560, 964
BspANI	GGCC	4 cut(s)	232, 543, 761, 916
BspCNI	CTCAG	2 cut(s)	329, 941
BspLI	GGNNCC	5 cut(s)	233, 520, 530, 915, 952
BspMI	ACCTGC	1 cut(s)	904
BspPI	GGATC	4 cut(s)	37, 352, 734, 955
BspT107I	GGYRCC	2 cut(s)	518, 528
BsrFI	RCCGGY	1 cut(s)	901
BsrI	ACTGG	4 cut(s)	233, 544, 690, 762
BssAI	RCCGGY	1 cut(s)	901
BssECI	CCNNGG	4 cut(s)	25, 524, 630, 954
BssMI	GATC	7 cut(s)	29, 86, 129, 328, 344, 739, 960
BssNAI	GTATAC	1 cut(s)	392
BssNI	GRCGYC	1 cut(s)	529
BssSI	CACGAG	1 cut(s)	581
BssT1I	CCWWGG	3 cut(s)	25, 630, 954
Bst1107I	GTATAC	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	581
Bst2UI	CCWGG	3 cut(s)	506, 526, 545
Bst4CI	ACNGT	6 cut(s)	17, 112, 439, 475, 695, 700
Bst6I	CTCTTC	1 cut(s)	681
BstACI	GRCGYC	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	68, 650
BstDEI	CTNAG	2 cut(s)	316, 928
BstDSI	CCRYGG	3 cut(s)	25, 630, 954
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	406, 694
BstH2I	RGCGCY	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	7 cut(s)	32, 89, 132, 331, 347, 742, 963
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	7 cut(s)	29, 86, 129, 328, 344, 739, 960
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 540
BstNI	CCWGG	3 cut(s)	506, 526, 545
BstNSI	RCATGY	2 cut(s)	70, 462
BstSCI	CCNGG	3 cut(s)	504, 524, 543
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	743
BstX2I	RGATCY	3 cut(s)	29, 739, 960
BstYI	RGATCY	3 cut(s)	29, 739, 960
BstZ17I	GTATAC	1 cut(s)	392
BsuRI	GGCC	4 cut(s)	232, 543, 761, 916
BtgI	CCRYGG	3 cut(s)	25, 630, 954
BtsCI	GGATG	2 cut(s)	406, 694
BtsIMutI	CAGTG	2 cut(s)	444, 755
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	2 cut(s)	68, 650
CaiI	CAGNNNCTG	1 cut(s)	685
CfoI	GCGC	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	901
Cfr13I	GGNCC	3 cut(s)	91, 231, 914
CseI	GACGC	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	209, 696
CspAI	ACCGGT	1 cut(s)	901
CviAII	CATG	7 cut(s)	26, 67, 151, 459, 631, 864, 955
CviQI	GTAC	2 cut(s)	209, 696
DdeI	CTNAG	2 cut(s)	316, 928
DinI	GGCGCC	1 cut(s)	530
DpnI	GATC	7 cut(s)	31, 88, 131, 330, 346, 741, 962
DpnII	GATC	7 cut(s)	29, 86, 129, 328, 344, 739, 960
EaeI	YGGCCR	2 cut(s)	541, 759
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco130I	CCWWGG	3 cut(s)	25, 630, 954
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	662, 794
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	914
EcoRII	CCWGG	3 cut(s)	504, 524, 543
EcoT14I	CCWWGG	3 cut(s)	25, 630, 954
EgeI	GGCGCC	1 cut(s)	530
EheI	GGCGCC	1 cut(s)	530
ErhI	CCWWGG	3 cut(s)	25, 630, 954
FaeI	CATG	7 cut(s)	29, 70, 154, 462, 634, 867, 958
FatI	CATG	7 cut(s)	25, 66, 150, 458, 630, 863, 954
FblI	GTMKAC	2 cut(s)	171, 391
Fnu4HI	GCNGC	2 cut(s)	532, 732
FokI	GGATG	2 cut(s)	413, 701
Fsp4HI	GCNGC	2 cut(s)	532, 732
FspBI	CTAG	2 cut(s)	44, 569
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	2 cut(s)	532, 732
HaeII	RGCGCY	1 cut(s)	532
HaeIII	GGCC	4 cut(s)	232, 543, 761, 916
HapII	CCGG	1 cut(s)	902
HgaI	GACGC	1 cut(s)	594
HhaI	GCGC	1 cut(s)	531
Hin1I	GRCGYC	1 cut(s)	529
Hin1II	CATG	7 cut(s)	29, 70, 154, 462, 634, 867, 958
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	6, 404, 635
HpaII	CCGG	1 cut(s)	902
HphI	GGTGA	3 cut(s)	431, 820, 890
Hpy166II	GTNNAC	5 cut(s)	172, 291, 392, 502, 553
Hpy188I	TCNGA	3 cut(s)	298, 310, 847
Hpy188III	TCNNGA	2 cut(s)	408, 680
Hpy8I	GTNNAC	5 cut(s)	172, 291, 392, 502, 553
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	5 cut(s)	183, 458, 716, 805, 979
HpyCH4III	ACNGT	6 cut(s)	17, 112, 439, 475, 695, 700
HpyCH4V	TGCA	3 cut(s)	444, 830, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 540
HpyF3I	CTNAG	2 cut(s)	316, 928
Hsp92I	GRCGYC	1 cut(s)	529
Hsp92II	CATG	7 cut(s)	29, 70, 154, 462, 634, 867, 958
HspAI	GCGC	1 cut(s)	529
KasI	GGCGCC	1 cut(s)	528
Kzo9I	GATC	7 cut(s)	29, 86, 129, 328, 344, 739, 960
LmnI	GCTCC	1 cut(s)	708
Lsp1109I	GCAGC	1 cut(s)	743
LweI	GCATC	2 cut(s)	366, 453
MaeI	CTAG	2 cut(s)	44, 569
MaeIII	GTNAC	3 cut(s)	39, 606, 878
MalI	GATC	7 cut(s)	31, 88, 131, 330, 346, 741, 962
MboI	GATC	7 cut(s)	29, 86, 129, 328, 344, 739, 960
MboII	GAAGA	9 cut(s)	368, 461, 557, 668, 749, 787, 790, 865, 868
MflI	RGATCY	3 cut(s)	29, 739, 960
MhlI	GDGCHC	2 cut(s)	523, 705
MlsI	TGGCCA	2 cut(s)	543, 761
MluCI	AATT	3 cut(s)	366, 640, 980
MluNI	TGGCCA	2 cut(s)	543, 761
Mly113I	GGCGCC	1 cut(s)	529
MmeI	TCCRAC	2 cut(s)	96, 825
Mox20I	TGGCCA	2 cut(s)	543, 761
MscI	TGGCCA	2 cut(s)	543, 761
MseI	TTAA	2 cut(s)	201, 243
MslI	CAYNNNNRTG	3 cut(s)	137, 723, 971
Msp20I	TGGCCA	2 cut(s)	543, 761
MspI	CCGG	1 cut(s)	902
MspR9I	CCNGG	3 cut(s)	506, 526, 545
Mva1269I	GAATGC	1 cut(s)	572
MvaI	CCWGG	3 cut(s)	506, 526, 545
MwoI	GCNNNNNNNGC	2 cut(s)	385, 540
NarI	GGCGCC	1 cut(s)	529
NcoI	CCATGG	3 cut(s)	25, 630, 954
NdeII	GATC	7 cut(s)	29, 86, 129, 328, 344, 739, 960
NlaIII	CATG	7 cut(s)	29, 70, 154, 462, 634, 867, 958
NlaIV	GGNNCC	5 cut(s)	233, 520, 530, 915, 952
NmuCI	GTSAC	2 cut(s)	606, 878
NspI	RCATGY	2 cut(s)	70, 462
OliI	CACNNNNGTG	1 cut(s)	971
PaeI	GCATGC	1 cut(s)	70
PctI	GAATGC	1 cut(s)	572
PfeI	GAWTC	3 cut(s)	6, 404, 635
PflFI	GACNNNGTC	1 cut(s)	604
PinAI	ACCGGT	1 cut(s)	901
PkrI	GCNGC	2 cut(s)	533, 733
Ple19I	CGATCG	1 cut(s)	89
PluTI	GGCGCC	1 cut(s)	532
Psp6I	CCWGG	3 cut(s)	504, 524, 543
PspGI	CCWGG	3 cut(s)	504, 524, 543
PspN4I	GGNNCC	5 cut(s)	233, 520, 530, 915, 952
PspPI	GGNCC	3 cut(s)	91, 231, 914
PstNI	CAGNNNCTG	1 cut(s)	685
PsuI	RGATCY	3 cut(s)	29, 739, 960
PsyI	GACNNNGTC	1 cut(s)	604
PvuI	CGATCG	1 cut(s)	89
RsaI	GTAC	2 cut(s)	210, 697
RsaNI	GTAC	2 cut(s)	209, 696
RseI	CAYNNNNRTG	3 cut(s)	137, 723, 971
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	201, 243
SatI	GCNGC	2 cut(s)	532, 732
Sau3AI	GATC	7 cut(s)	29, 86, 129, 328, 344, 739, 960
Sau96I	GGNCC	3 cut(s)	91, 231, 914
ScrFI	CCNGG	3 cut(s)	506, 526, 545
SduI	GDGCHC	2 cut(s)	523, 705
SfaNI	GCATC	2 cut(s)	366, 453
SfoI	GGCGCC	1 cut(s)	530
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	3 cut(s)	137, 723, 971
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SphI	GCATGC	1 cut(s)	70
Sse9I	AATT	3 cut(s)	366, 640, 980
SsiI	CCGC	3 cut(s)	532, 560, 964
SspDI	GGCGCC	1 cut(s)	528
SspI	AATATT	1 cut(s)	749
SspMI	CTAG	2 cut(s)	44, 569
StyD4I	CCNGG	3 cut(s)	504, 524, 543
StyI	CCWWGG	3 cut(s)	25, 630, 954
TaaI	ACNGT	6 cut(s)	17, 112, 439, 475, 695, 700
TaqI	TCGA	7 cut(s)	128, 171, 407, 447, 478, 873, 921
TaqII	GACCGA	1 cut(s)	79
TasI	AATT	3 cut(s)	366, 640, 980
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	6, 404, 635
Tru1I	TTAA	2 cut(s)	201, 243
Tru9I	TTAA	2 cut(s)	201, 243
TscAI	CASTG	2 cut(s)	444, 762
TseFI	GTSAC	2 cut(s)	606, 878
TseI	GCWGC	1 cut(s)	731
Tsp45I	GTSAC	2 cut(s)	606, 878
TspDTI	ATGAA	4 cut(s)	187, 447, 866, 906
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	2 cut(s)	444, 762
Tth111I	GACNNNGTC	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	91
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	980
XceI	RCATGY	2 cut(s)	70, 462
XmiI	GTMKAC	2 cut(s)	171, 391
XspI	CTAG	2 cut(s)	44, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.