Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Forward (+)

173772 .. 173960

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAGAAAAAGAGACTCAATTGGAAGGTGGAAGAAGGCTCTTCATCAGAGGCAAAGGCTGCGAGGGGTGGAACTGTTGATCCTGCAAAACTGGTTGTGGAACTTGCACCAATGGAAATCCGAACCTTTCTCGTTGAGTTTAACCAAAGCTTTCATTTGATGCCTAACCGAATGAGGCTGAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005766 GO:0005773 GO:0005775 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009100 GO:0009311 GO:0009313 GO:0009987 GO:0012505 GO:0015923 GO:0016052 GO:0016192 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0034774 GO:0035578 GO:0036211 GO:0036230 GO:0042119 GO:0042582 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:1901135 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

63

Amino Acids

7.13

Weight (kDa)

9.69

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	74
AloI	GAACNNNNNNTCC	2 cut(s)	64, 96
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	7
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	46
CviJI	RGCY	4 cut(s)	39, 59, 150, 178
CviKI_1	RGCY	4 cut(s)	39, 59, 150, 178
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	49, 122
HpyAV	CCTTC	2 cut(s)	19, 29
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	86, 107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	79
LguI	GCTCTTC	1 cut(s)	46
LpnPI	CCDG	2 cut(s)	77, 96
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	150
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	33, 44
MfeI	CAATTG	1 cut(s)	19
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	9
MnlI	CCTC	3 cut(s)	43, 57, 168
MseI	TTAA	1 cut(s)	141
MunI	CAATTG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	9
SetI	ASST	3 cut(s)	30, 128, 152
SfaNI	GCATC	1 cut(s)	150
SgeI	CNNG	5 cut(s)	75, 95, 104, 116, 143
Sse9I	AATT	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	33, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.