Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Reverse (-)

18290979 .. 18310089

Gene Structure 19111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0116100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGTATATATTCGCCTCAGGCCTCTACAATCTCAGGACCGGCCCTGGCAGCAGTACAGCCAGTACTCCCTATACTACTTTATTCTCGCACAACACATTTTCTCAAGTTCAACCTCATATTCAATCATGGACCAAGACATATGGGAAGAATTATCTTCAATGGAATGGTCGTCAAGCTCAGTTGGTAATTACGGAACCTGAGTTGTGCAAAGAGATACTAGAAAACAGAGATGGAGCATTTTTAAAGCCGATGCCCCCTAGCTATATAAAGAAGCTAAAAGGAGAAGGTCTCCCAAGATCAGTAGGTCCAAAATGGGAAAAGTTAAGGAAGCTGGCAAACCATGCCTACCATGGAGAAAGCTTAAAGAGTATGACTCCAGCAATGATAGTTAGTACTGAAACAATGCTAGAAAGGTGGGGAAATCATGAAGGCAAAGAGATTGATGTGTTTGAAGAATTTAAGTTGCTCACATCAGAAGTGCTTTCGAGGACAGCATTTGGCAGTAGCTACTTAGAAGGATTAAGCAATTTTGAGAAGACAACAGAGTTATTCTCCTATATGTACAAGTGCTCTTCCAAACTCAGGCTTCCGGGCATCAGTAAGATTTTCAAAACCAGCGATGAGGTCAAATCAGAGAAGCTTGAAAAAGAAATATGCGAAACCCTACTAGATATTGTTAAGAAACGAGAAAAGAAGGCAATGACAACTGGAGGAGAAGATAACAACTTTGGGAGTGATTTGCTTGGATTTCTGTTAAAGACTTGTCATGATTCGAGTGACAAAAACAGGATTTCACTTGAGGATTTGGTGAACGAGTGCAAGACGTTTTGCTTTGCCGGACAAGAAACCTTAGCTGTTCTTACTTGGACTATCTTCCTTCTTGCACTCCATACGGATTGGCAAGAGGAAGCCAGAAAGGAGGTCCTAGAAGTATTTGGCAAACAAGCTCCAAATCCTAATGACATTTTCAAGCTAAAAACTATGAGCATGATCATCAACGAGTCTCTAAGATTATATCCTCCCATTGTTTCCCTAGTAAGGAAGGTTGATAAGGAAGTTAGACTAGCAAACCTTATTGTCCCTGCTGATGTTGAATTGCTCATCCCAAACCTAGCATTCCACCATGAGCCACAACTTTGGGGGCAAGATGTACAACTATTCAAACCGGAGAGGTTCTCAGAAGGGGTTGCTAAAGCTACAAGGAACAACAGAGCTGCATTCTTACCCTTTGGAATGGGACCTCGAACTTGTGTGGGCTTCAACTTCGCGACAACAGAGGCAAAGATTGTTGTGTCAATGATTCTACAACGTCACACCATCACCATTTCCCCGACTTATGTTCATTCGCCCCGCGAGTTTATTACAGTTCAACCAGAACATGGTGTTCAAGTAGTTCTGCACTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0015923 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

469

Amino Acids

53.22

Weight (kDa)

8.3

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 448	2.7e-69	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1379
AccII	CGCG	2 cut(s)	1268, 1353
AciI	CCGC	1 cut(s)	1351
AcsI	RAATTY	1 cut(s)	455
AfaI	GTAC	5 cut(s)	55, 64, 394, 563, 1152
AfiI	CCNNNNNNNGG	3 cut(s)	582, 1038, 1379
AjnI	CCWGG	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	2 cut(s)	293, 1008
AoxI	GGCC	2 cut(s)	19, 40
ApeKI	GCWGC	2 cut(s)	48, 1214
ApoI	RAATTY	1 cut(s)	455
AspS9I	GGNCC	6 cut(s)	36, 41, 129, 305, 922, 1238
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	2 cut(s)	820, 1312
AvaII	GGWCC	5 cut(s)	36, 129, 305, 922, 1238
AxyI	CCTNAGG	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	60, 1201
BccI	CCATC	2 cut(s)	224, 1325
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	591
BcoDI	GTCTC	2 cut(s)	293, 1008
BfaI	CTAG	8 cut(s)	218, 258, 407, 668, 926, 1034, 1064, 1112
BisI	GCNGC	2 cut(s)	49, 1215
BlsI	GCNGC	2 cut(s)	50, 1216
BmcAI	AGTACT	2 cut(s)	64, 394
Bme1390I	CCNGG	2 cut(s)	45, 591
Bme18I	GGWCC	5 cut(s)	36, 129, 305, 922, 1238
BmgT120I	GGNCC	6 cut(s)	36, 41, 129, 305, 922, 1238
BmiI	GGNNCC	2 cut(s)	195, 1239
BmrFI	CCNGG	2 cut(s)	45, 591
BmsI	GCATC	2 cut(s)	240, 603
BpiI	GAAGAC	1 cut(s)	542
BplI	GAGNNNNNCTC	8 cut(s)	273, 305, 358, 390, 536, 568, 1160, 1192
BpmI	CTGGAG	2 cut(s)	360, 729
Bpu10I	CCTNAGC	1 cut(s)	850
BpuEI	CTTGAG	2 cut(s)	87, 818
BpuMI	CCSGG	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	43, 349
BsaWI	WCCGGW	1 cut(s)	1165
Bsc4I	CCNNNNNNNGG	3 cut(s)	582, 1038, 1379
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	60, 712
Bse21I	CCTNAGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	387, 705
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	43, 349
BseGI	GGATG	1 cut(s)	1101
BseLI	CCNNNNNNNGG	3 cut(s)	582, 1038, 1379
BseMI	GCAATG	2 cut(s)	387, 705
BseMII	CTCAG	6 cut(s)	30, 46, 189, 191, 595, 1191
BseNI	ACTGG	2 cut(s)	60, 712
BseRI	GAGGAG	1 cut(s)	726
BseXI	GCAGC	2 cut(s)	60, 1201
BsgI	GTGCAG	1 cut(s)	1382
Bsh1236I	CGCG	2 cut(s)	1268, 1353
BshFI	GGCC	2 cut(s)	21, 42
BsiHKAI	GWGCWC	1 cut(s)	572
BsiSI	CCGG	4 cut(s)	39, 590, 837, 1166
BslFI	GGGAC	2 cut(s)	1064, 1251
BslI	CCNNNNNNNGG	3 cut(s)	582, 1038, 1379
BsmAI	GTCTC	2 cut(s)	293, 1008
BsmFI	GGGAC	2 cut(s)	1064, 1251
BsmI	GAATGC	2 cut(s)	1115, 1217
BsnI	GGCC	2 cut(s)	21, 42
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp1407I	TGTACA	2 cut(s)	561, 1150
Bsp143I	GATC	2 cut(s)	296, 990
Bsp19I	CCATGG	1 cut(s)	349
Bsp68I	TCGCGA	1 cut(s)	1268
BspACI	CCGC	1 cut(s)	1351
BspANI	GGCC	2 cut(s)	21, 42
BspCNI	CTCAG	6 cut(s)	29, 45, 190, 190, 594, 1190
BspFNI	CGCG	2 cut(s)	1268, 1353
BspHI	TCATGA	2 cut(s)	424, 766
BspLI	GGNNCC	2 cut(s)	195, 1239
BspQI	GCTCTTC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	387, 705
BsrFI	RCCGGY	1 cut(s)	38
BsrGI	TGTACA	2 cut(s)	561, 1150
BsrI	ACTGG	2 cut(s)	60, 712
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	43, 349
BssMI	GATC	2 cut(s)	296, 990
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	1366, 1407
Bst6I	CTCTTC	1 cut(s)	577
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstAUI	TGTACA	2 cut(s)	561, 1150
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	9 cut(s)	16, 32, 177, 198, 511, 581, 850, 1007, 1177
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	1101
BstFNI	CGCG	2 cut(s)	1268, 1353
BstKTI	GATC	2 cut(s)	299, 993
BstMAI	GTCTC	2 cut(s)	293, 1008
BstMBI	GATC	2 cut(s)	296, 990
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 341
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	43, 589
BstUI	CGCG	2 cut(s)	1268, 1353
BstV1I	GCAGC	2 cut(s)	60, 1201
BstV2I	GAAGAC	1 cut(s)	542
BstXI	CCANNNNNNTGG	1 cut(s)	1137
Bsu36I	CCTNAGG	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	21, 42
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	1101
BtsIMutI	CAGTG	1 cut(s)	1403
BtuMI	TCGCGA	1 cut(s)	1268
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	2 cut(s)	424, 766
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	6 cut(s)	36, 41, 129, 305, 922, 1238
Csp6I	GTAC	5 cut(s)	54, 63, 393, 562, 1151
CviAII	CATG	8 cut(s)	126, 341, 350, 425, 767, 988, 1124, 1379
CviQI	GTAC	5 cut(s)	54, 63, 393, 562, 1151
DdeI	CTNAG	9 cut(s)	16, 32, 177, 198, 511, 581, 850, 1007, 1177
DpnI	GATC	2 cut(s)	298, 992
DpnII	GATC	2 cut(s)	296, 990
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	5 cut(s)	36, 129, 305, 922, 1238
Eco81I	CCTNAGG	1 cut(s)	16
EcoO109I	RGGNCCY	2 cut(s)	922, 1238
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	8 cut(s)	129, 344, 353, 428, 770, 991, 1127, 1382
FaqI	GGGAC	2 cut(s)	1064, 1251
FatI	CATG	8 cut(s)	125, 340, 349, 424, 766, 987, 1123, 1378
FauI	CCCGC	1 cut(s)	1358
FauNDI	CATATG	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	990
Fnu4HI	GCNGC	2 cut(s)	49, 1215
FokI	GGATG	1 cut(s)	1088
Fsp4HI	GCNGC	2 cut(s)	49, 1215
FspBI	CTAG	8 cut(s)	218, 258, 407, 668, 926, 1034, 1064, 1112
GluI	GCNGC	2 cut(s)	49, 1215
GsuI	CTGGAG	2 cut(s)	360, 729
HaeIII	GGCC	2 cut(s)	21, 42
HapII	CCGG	4 cut(s)	39, 590, 837, 1166
Hin1II	CATG	8 cut(s)	129, 344, 353, 428, 770, 991, 1127, 1382
HindIII	AAGCTT	2 cut(s)	358, 638
HinfI	GANTC	4 cut(s)	373, 770, 1001, 1300
HpaII	CCGG	4 cut(s)	39, 590, 837, 1166
HphI	GGTGA	2 cut(s)	820, 1312
Hpy166II	GTNNAC	1 cut(s)	811
Hpy188I	TCNGA	3 cut(s)	475, 634, 1180
Hpy188III	TCNNGA	4 cut(s)	34, 425, 767, 1267
Hpy8I	GTNNAC	1 cut(s)	811
HpyAV	CCTTC	7 cut(s)	278, 422, 509, 688, 887, 1036, 1175
HpyCH4III	ACNGT	2 cut(s)	1366, 1407
HpyCH4IV	ACGT	2 cut(s)	824, 1309
HpyCH4V	TGCA	5 cut(s)	207, 819, 884, 1217, 1399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 341
HpyF3I	CTNAG	9 cut(s)	16, 32, 177, 198, 511, 581, 850, 1007, 1177
HpySE526I	ACGT	2 cut(s)	824, 1309
Hsp92II	CATG	8 cut(s)	129, 344, 353, 428, 770, 991, 1127, 1382
Ksp22I	TGATCA	1 cut(s)	990
Kzo9I	GATC	2 cut(s)	296, 990
LguI	GCTCTTC	1 cut(s)	577
LmnI	GCTCC	2 cut(s)	233, 952
Lsp1109I	GCAGC	2 cut(s)	60, 1201
LweI	GCATC	2 cut(s)	240, 603
MaeI	CTAG	8 cut(s)	218, 258, 407, 668, 926, 1034, 1064, 1112
MaeII	ACGT	2 cut(s)	824, 1309
MaeIII	GTNAC	2 cut(s)	776, 1310
MalI	GATC	2 cut(s)	298, 992
MboI	GATC	2 cut(s)	296, 990
MboII	GAAGA	7 cut(s)	146, 157, 464, 547, 564, 728, 865
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	5 cut(s)	148, 186, 455, 526, 1094
MlyI	GAGTC	2 cut(s)	367, 1010
MseI	TTAA	7 cut(s)	242, 323, 362, 459, 521, 678, 755
MspI	CCGG	4 cut(s)	39, 590, 837, 1166
MspR9I	CCNGG	2 cut(s)	45, 591
Mva1269I	GAATGC	2 cut(s)	1115, 1217
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	2 cut(s)	1268, 1353
MwoI	GCNNNNNNNGC	2 cut(s)	48, 341
NciI	CCSGG	1 cut(s)	591
NcoI	CCATGG	1 cut(s)	349
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	296, 990
NlaIII	CATG	8 cut(s)	129, 344, 353, 428, 770, 991, 1127, 1382
NlaIV	GGNNCC	2 cut(s)	195, 1239
NmuCI	GTSAC	2 cut(s)	776, 1310
NruI	TCGCGA	1 cut(s)	1268
PagI	TCATGA	2 cut(s)	424, 766
PceI	AGGCCT	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	577
PctI	GAATGC	2 cut(s)	1115, 1217
PfeI	GAWTC	2 cut(s)	770, 1300
PflMI	CCANNNNNTGG	1 cut(s)	1379
PkrI	GCNGC	2 cut(s)	50, 1216
PleI	GAGTC	2 cut(s)	367, 1009
PpsI	GAGTC	2 cut(s)	367, 1009
PpuMI	RGGWCCY	2 cut(s)	922, 1238
Psp5II	RGGWCCY	2 cut(s)	922, 1238
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	195, 1239
PspPI	GGNCC	6 cut(s)	36, 41, 129, 305, 922, 1238
PspPPI	RGGWCCY	2 cut(s)	922, 1238
RruI	TCGCGA	1 cut(s)	1268
RsaI	GTAC	5 cut(s)	55, 64, 394, 563, 1152
RsaNI	GTAC	5 cut(s)	54, 63, 393, 562, 1151
SapI	GCTCTTC	1 cut(s)	577
SaqAI	TTAA	7 cut(s)	242, 323, 362, 459, 521, 678, 755
SatI	GCNGC	2 cut(s)	49, 1215
Sau3AI	GATC	2 cut(s)	296, 990
Sau96I	GGNCC	6 cut(s)	36, 41, 129, 305, 922, 1238
ScaI	AGTACT	2 cut(s)	64, 394
SchI	GAGTC	2 cut(s)	367, 1010
ScrFI	CCNGG	2 cut(s)	45, 591
SduI	GDGCHC	1 cut(s)	572
SfaNI	GCATC	2 cut(s)	240, 603
SinI	GGWCC	5 cut(s)	36, 129, 305, 922, 1238
SmlI	CTYRAG	2 cut(s)	102, 797
SmoI	CTYRAG	2 cut(s)	102, 797
Sse9I	AATT	5 cut(s)	148, 186, 455, 526, 1094
SseBI	AGGCCT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	1351
SspMI	CTAG	8 cut(s)	218, 258, 407, 668, 926, 1034, 1064, 1112
StuI	AGGCCT	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	43, 589
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	1366, 1407
TaiI	ACGT	2 cut(s)	827, 1312
TaqI	TCGA	3 cut(s)	485, 773, 1243
TasI	AATT	5 cut(s)	148, 186, 455, 526, 1094
TatI	WGTACW	5 cut(s)	53, 62, 392, 561, 1150
TfiI	GAWTC	2 cut(s)	770, 1300
Tru1I	TTAA	7 cut(s)	242, 323, 362, 459, 521, 678, 755
Tru9I	TTAA	7 cut(s)	242, 323, 362, 459, 521, 678, 755
TscAI	CASTG	1 cut(s)	1410
TseFI	GTSAC	2 cut(s)	776, 1310
TseI	GCWGC	2 cut(s)	48, 1214
Tsp45I	GTSAC	2 cut(s)	776, 1310
TspDTI	ATGAA	2 cut(s)	441, 1331
TspGWI	ACGGA	2 cut(s)	206, 908
TspRI	CASTG	1 cut(s)	1410
Van91I	CCANNNNNTGG	1 cut(s)	1379
VpaK11BI	GGWCC	5 cut(s)	36, 129, 305, 922, 1238
XapI	RAATTY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XspI	CTAG	8 cut(s)	218, 258, 407, 668, 926, 1034, 1064, 1112
ZrmI	AGTACT	2 cut(s)	64, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.