Rmu_sc0040167.1_g000001

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040167.1
OG0013740
Physical Location & Seq
Forward (+)
275 .. 1504
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040167.1_g000001.1.cds

Sequence Viewer

Length: 353 bp
atggaaaggaagagactggtttggaatgtgcaaggctcttctgaggaaggacggaaaggcttgaggggaggacctgttgatccaacaaagctagtgatagaaataacggaccaaggtccaaagccaaaacaaagaaactgcagaggtcactgcgaaaccgccgccggagcaatctcaggcaggatatttgagatggggaaagagaaccagacgacgtcggctatggagatcgacaatcaaaaggcgaactcctccgatcagatcggtcctaaattctcaatcaacgttttacagctgttgaaatctgctcagatgcagcatggattgcgccatggggattacactcgttatcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP68

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

9.64

Isoelectric Point (pI)

28.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 218
AciI CCGC 2 cut(s) 159, 162
AclI AACGTT 1 cut(s) 285
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 215
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 2 cut(s) 91, 295
AluI AGCT 2 cut(s) 91, 295
Alw26I GTCTC 1 cut(s) 7
AlwI GGATC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 4 cut(s) 71, 109, 116, 266
AvaII GGWCC 4 cut(s) 71, 109, 116, 266
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 7
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 139
BisI GCNGC 2 cut(s) 162, 317
BlsI GCNGC 2 cut(s) 163, 318
Bme18I GGWCC 4 cut(s) 71, 109, 116, 266
BmgT120I GGNCC 4 cut(s) 71, 109, 116, 266
BmsI GCATC 1 cut(s) 303
BoxI GACNNNNGTC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 112, 331
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bse1I ACTGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 112, 331
BseMII CTCAG 3 cut(s) 33, 189, 323
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 7
Bsp143I GATC 4 cut(s) 79, 228, 256, 261
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 2 cut(s) 159, 162
BspCNI CTCAG 3 cut(s) 34, 188, 322
BspMAI CTGCAG 1 cut(s) 143
BspPI GGATC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 112, 331
BssMI GATC 4 cut(s) 79, 228, 256, 261
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 112, 331
Bst6I CTCTTC 2 cut(s) 5, 43
BstACI GRCGYC 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 325
BstDEI CTNAG 3 cut(s) 42, 175, 309
BstDSI CCRYGG 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 4 cut(s) 82, 231, 259, 264
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 4 cut(s) 79, 228, 256, 261
BstMWI GCNNNNNNNGC 2 cut(s) 167, 325
BstPAI GACNNNNGTC 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 148
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 4 cut(s) 71, 109, 116, 266
CviAII CATG 2 cut(s) 320, 332
CviJI RGCY 6 cut(s) 36, 60, 91, 124, 221, 295
CviKI_1 RGCY 6 cut(s) 36, 60, 91, 124, 221, 295
DdeI CTNAG 3 cut(s) 42, 175, 309
DpnI GATC 4 cut(s) 81, 230, 258, 263
DpnII GATC 4 cut(s) 79, 228, 256, 261
Eam1104I CTCTTC 2 cut(s) 5, 43
EarI CTCTTC 2 cut(s) 5, 43
Eco130I CCWWGG 2 cut(s) 112, 331
Eco47I GGWCC 4 cut(s) 71, 109, 116, 266
EcoO109I RGGNCCY 1 cut(s) 71
EcoT14I CCWWGG 2 cut(s) 112, 331
ErhI CCWWGG 2 cut(s) 112, 331
FaeI CATG 2 cut(s) 323, 335
FaiI YATR 3 cut(s) 224, 321, 333
FatI CATG 2 cut(s) 319, 331
Fnu4HI GCNGC 2 cut(s) 162, 317
Fsp4HI GCNGC 2 cut(s) 162, 317
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 329
GluI GCNGC 2 cut(s) 162, 317
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 2 cut(s) 323, 335
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HpaII CCGG 1 cut(s) 165
Hpy188I TCNGA 4 cut(s) 43, 256, 261, 312
Hpy99I CGWCG 2 cut(s) 217, 220
HpyAV CCTTC 1 cut(s) 41
HpyCH4IV ACGT 2 cut(s) 215, 285
HpyCH4V TGCA 3 cut(s) 31, 141, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 325
HpyF3I CTNAG 3 cut(s) 42, 175, 309
HpySE526I ACGT 2 cut(s) 215, 285
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 2 cut(s) 323, 335
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 4 cut(s) 79, 228, 256, 261
LguI GCTCTTC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 6 cut(s) 2, 87, 162, 166, 178, 221
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 92
MaeII ACGT 2 cut(s) 215, 285
MaeIII GTNAC 1 cut(s) 146
MalI GATC 4 cut(s) 81, 230, 258, 263
MboI GATC 4 cut(s) 79, 228, 256, 261
MboII GAAGA 2 cut(s) 22, 30
MluCI AATT 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 5 cut(s) 37, 57, 62, 137, 262
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 167, 325
NcoI CCATGG 1 cut(s) 331
NdeII GATC 4 cut(s) 79, 228, 256, 261
NlaIII CATG 2 cut(s) 323, 335
NmuCI GTSAC 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 2 cut(s) 163, 318
PpuMI RGGWCCY 1 cut(s) 71
PshAI GACNNNNGTC 1 cut(s) 114
Psp1406I AACGTT 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 71
PspPI GGNCC 4 cut(s) 71, 109, 116, 266
PspPPI RGGWCCY 1 cut(s) 71
PstI CTGCAG 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 43
SatI GCNGC 2 cut(s) 162, 317
Sau3AI GATC 4 cut(s) 79, 228, 256, 261
Sau96I GGNCC 4 cut(s) 71, 109, 116, 266
SetI ASST 7 cut(s) 76, 93, 118, 148, 218, 288, 297
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 139
SinI GGWCC 4 cut(s) 71, 109, 116, 266
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 1 cut(s) 272
SsiI CCGC 2 cut(s) 159, 162
SspMI CTAG 1 cut(s) 92
StyI CCWWGG 2 cut(s) 112, 331
TaiI ACGT 2 cut(s) 218, 288
TaqI TCGA 1 cut(s) 231
TaqII GACCGA 1 cut(s) 254
TasI AATT 1 cut(s) 272
TauI GCSGC 1 cut(s) 164
TscAI CASTG 1 cut(s) 155
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 146
TspGWI ACGGA 2 cut(s) 67, 122
TspRI CASTG 1 cut(s) 155
Tth111I GACNNNGTC 1 cut(s) 214
VpaK11BI GGWCC 4 cut(s) 71, 109, 116, 266
XapI RAATTY 1 cut(s) 272
XspI CTAG 1 cut(s) 92
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.