Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Forward (+)

17461582 .. 17463286

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12320.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAAAACAAACAAACGATTCTACACAGACTCCAACGGGCGCGATTTTATCGAAAGAATTCGAGACTACAGAAAAGACTGGGATCTTGAAGTGAATCAACCTGTTGCAGGAAATTATTATCCAATTAATCTCGGAATCTACACGAAAGATAACAACACAGAGCTGTCAGTATTAGTAGATAGATCTGTGGGTGGATCCAGCATTGTGGATGGACAATTGGAACTCATGCTTCATAGGAGGTTGCTCAGTGACGATGACAAAGGTATATTTGAAGCCCTAAACGAAACTGTGTGCATTCAAGATGATTGTGAAGGACTCATTATCATCGGAAAGTACTACCTCAGACTCGATCCATTGGGAGAGGGCGCTAAATGGCGTCGATCATTTGGTCAGGAGATATACTCTCCATTTCTTTTAGCCATCACAGAACAAGATGAAGATAGCTGGACAAGCTCTCATGTCACAACCTTTTCCGGAATGGATCCTTCCTACACTTTACCTGATAATGTCGCGATAATAACCCTCCAGGAGCTGGAAGATGGAAAACTTCTGTTCCGCCTTGCGCATTTATATGAGATTGATGAGGACAAGGATCTTTCGGTAATGGCAAGTGTAGAGCTCAAAAAAGTGTTTGCAGATAAGAAGATTAGAAAAGTAACGGAAATGAGTTTATCTGCAAACCAAGAACGAGCGGAAATGGAGAAGAAGCGACTAGTGTGGAAAGCAGAAGGCTCCCCCGAAGGAGAAGCTAAAGTGTTGAGGGGAGGACCTGTTGATCCAACAAAGCTGGTGGTTGATCTTGCTCCAATGGAAATTCGAACGCTTATCATCGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

280

Amino Acids

31.81

Weight (kDa)

4.81

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	564
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	692
AccII	CGCG	2 cut(s)	42, 512
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	2 cut(s)	556, 692
AclWI	GGATC	8 cut(s)	90, 189, 202, 344, 476, 489, 600, 770
AcsI	RAATTY	2 cut(s)	57, 813
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	107, 532
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	3 cut(s)	89, 272, 299
AhlI	ACTAGT	1 cut(s)	712
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	7 cut(s)	163, 444, 453, 532, 619, 749, 787
AluI	AGCT	7 cut(s)	163, 444, 453, 532, 619, 749, 787
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	8 cut(s)	90, 189, 202, 344, 476, 489, 600, 770
AlwNI	CAGNNNCTG	1 cut(s)	532
Aor13HI	TCCGGA	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	57, 813
AseI	ATTAAT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	3 cut(s)	42, 368, 565
AspS9I	GGNCC	1 cut(s)	767
AsuII	TTCGAA	1 cut(s)	817
AvaII	GGWCC	1 cut(s)	767
BamHI	GGATCC	2 cut(s)	194, 481
BanII	GRGCYC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	621
BccI	CCATC	3 cut(s)	203, 428, 533
BciT130I	CCWGG	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	57
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	369
BglII	AGATCT	1 cut(s)	182
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	1 cut(s)	767
BmiI	GGNNCC	3 cut(s)	196, 483, 733
BmrFI	CCNGG	1 cut(s)	527
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	817
BsaHI	GRCGYC	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 756, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 532
Bse1I	ACTGG	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	527
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	107, 532
BseMII	CTCAG	2 cut(s)	259, 355
BseNI	ACTGG	1 cut(s)	83
Bsh1236I	CGCG	2 cut(s)	42, 512
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	107, 532
BsmAI	GTCTC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp13I	TCCGGA	1 cut(s)	473
Bsp143I	GATC	9 cut(s)	82, 182, 194, 349, 380, 481, 592, 775, 796
Bsp68I	TCGCGA	1 cut(s)	512
BspACI	CCGC	2 cut(s)	556, 692
BspCNI	CTCAG	2 cut(s)	258, 354
BspEI	TCCGGA	1 cut(s)	473
BspFNI	CGCG	2 cut(s)	42, 512
BspLI	GGNNCC	3 cut(s)	196, 483, 733
BspPI	GGATC	8 cut(s)	90, 189, 202, 344, 476, 489, 600, 770
BspT104I	TTCGAA	1 cut(s)	817
BsrBI	CCGCTC	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	9 cut(s)	82, 182, 194, 349, 380, 481, 592, 775, 796
BssNI	GRCGYC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	817
BstDEI	CTNAG	2 cut(s)	245, 341
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	2 cut(s)	42, 512
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	3 cut(s)	42, 368, 565
BstKTI	GATC	9 cut(s)	85, 185, 197, 352, 383, 484, 595, 778, 799
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	9 cut(s)	82, 182, 194, 349, 380, 481, 592, 775, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstNI	CCWGG	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	1 cut(s)	525
BstSFI	CTRYAG	1 cut(s)	67
BstUI	CGCG	2 cut(s)	42, 512
BstX2I	RGATCY	5 cut(s)	82, 182, 194, 481, 592
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	5 cut(s)	82, 182, 194, 481, 592
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	253
BtuMI	TCGCGA	1 cut(s)	512
CaiI	CAGNNNCTG	1 cut(s)	532
CfoI	GCGC	3 cut(s)	42, 368, 565
Cfr13I	GGNCC	1 cut(s)	767
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	334
CspCI	CAANNNNNGTGG	2 cut(s)	771, 806
CviAII	CATG	3 cut(s)	226, 458, 835
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	2 cut(s)	245, 341
DpnI	GATC	9 cut(s)	84, 184, 196, 351, 382, 483, 594, 777, 798
DpnII	GATC	9 cut(s)	82, 182, 194, 349, 380, 481, 592, 775, 796
EciI	GGCGGA	1 cut(s)	545
Ecl136II	GAGCTC	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	767
Eco53kI	GAGCTC	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	619
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	621
FaeI	CATG	3 cut(s)	229, 461, 838
FaiI	YATR	8 cut(s)	227, 234, 266, 400, 459, 571, 573, 836
FatI	CATG	3 cut(s)	225, 457, 834
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	621
FspBI	CTAG	1 cut(s)	713
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	3 cut(s)	41, 367, 564
GsuI	CTGGAG	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	369
HapII	CCGG	1 cut(s)	474
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	3 cut(s)	42, 368, 565
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	229, 461, 838
Hin6I	GCGC	3 cut(s)	40, 366, 563
HinP1I	GCGC	3 cut(s)	40, 366, 563
HinfI	GANTC	6 cut(s)	18, 29, 94, 135, 315, 345
HpaII	CCGG	1 cut(s)	474
Hpy188I	TCNGA	3 cut(s)	134, 329, 344
Hpy188III	TCNNGA	6 cut(s)	62, 86, 299, 392, 474, 511
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	4 cut(s)	305, 495, 722, 734
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	107, 294, 635, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	2 cut(s)	245, 341
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	229, 461, 838
HspAI	GCGC	3 cut(s)	40, 366, 563
Kpn2I	TCCGGA	1 cut(s)	473
Kzo9I	GATC	9 cut(s)	82, 182, 194, 349, 380, 481, 592, 775, 796
LmnI	GCTCC	3 cut(s)	529, 737, 808
MaeI	CTAG	1 cut(s)	713
MaeIII	GTNAC	3 cut(s)	248, 460, 655
MalI	GATC	9 cut(s)	84, 184, 196, 351, 382, 483, 594, 777, 798
MbiI	CCGCTC	1 cut(s)	692
MboI	GATC	9 cut(s)	82, 182, 194, 349, 380, 481, 592, 775, 796
MboII	GAAGA	4 cut(s)	449, 548, 655, 715
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	5 cut(s)	82, 182, 194, 481, 592
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	5 cut(s)	57, 112, 123, 215, 813
MlyI	GAGTC	3 cut(s)	23, 309, 339
MmeI	TCCRAC	2 cut(s)	57, 803
MnlI	CCTC	7 cut(s)	231, 350, 355, 533, 577, 753, 758
MroI	TCCGGA	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	570, 833
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	527
MunI	CAATTG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	2 cut(s)	42, 512
MwoI	GCNNNNNNNGC	1 cut(s)	450
NdeII	GATC	9 cut(s)	82, 182, 194, 349, 380, 481, 592, 775, 796
NlaIII	CATG	3 cut(s)	229, 461, 838
NlaIV	GGNNCC	3 cut(s)	196, 483, 733
NmuCI	GTSAC	2 cut(s)	248, 460
NruI	TCGCGA	1 cut(s)	512
NsbI	TGCGCA	1 cut(s)	564
NspI	RCATGY	1 cut(s)	838
NspV	TTCGAA	1 cut(s)	817
PciI	ACATGT	1 cut(s)	834
PctI	GAATGC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	18, 94, 135
PflMI	CCANNNNNTGG	1 cut(s)	532
PfoI	TCCNGGA	1 cut(s)	525
PleI	GAGTC	3 cut(s)	23, 309, 339
PpsI	GAGTC	3 cut(s)	23, 309, 339
PpuMI	RGGWCCY	1 cut(s)	767
PscI	ACATGT	1 cut(s)	834
PshBI	ATTAAT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	3 cut(s)	196, 483, 733
PspPI	GGNCC	1 cut(s)	767
PspPPI	RGGWCCY	1 cut(s)	767
PstNI	CAGNNNCTG	1 cut(s)	532
PsuI	RGATCY	5 cut(s)	82, 182, 194, 481, 592
RruI	TCGCGA	1 cut(s)	512
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	570, 833
SacI	GAGCTC	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	9 cut(s)	82, 182, 194, 349, 380, 481, 592, 775, 796
Sau96I	GGNCC	1 cut(s)	767
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	3 cut(s)	23, 309, 339
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	817
SinI	GGWCC	1 cut(s)	767
SmiMI	CAYNNNNRTG	2 cut(s)	570, 833
SpeI	ACTAGT	1 cut(s)	712
Sse9I	AATT	5 cut(s)	57, 112, 123, 215, 813
SsiI	CCGC	2 cut(s)	556, 692
SspMI	CTAG	1 cut(s)	713
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	6 cut(s)	51, 61, 348, 379, 817, 831
TasI	AATT	5 cut(s)	57, 112, 123, 215, 813
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	18, 94, 135
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	2 cut(s)	248, 460
Tsp45I	GTSAC	2 cut(s)	248, 460
TspDTI	ATGAA	3 cut(s)	17, 221, 450
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	767
VspI	ATTAAT	1 cut(s)	126
XagI	CCTNNNNNAGG	1 cut(s)	105
XapI	RAATTY	2 cut(s)	57, 813
XceI	RCATGY	1 cut(s)	838
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.