Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Reverse (-)

8240535 .. 8241100

Gene Structure 566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16868

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGATTCGAGTCTATAGAAAAGACTGGGACCTGGGAGTGAATCAACCTGTTGCTGGAAATTATCATCCGATTAATCTGGGAATCTACACGAAAGATAGTAGCACAGAGCTGTCAGTATTAGTAGATAGATCTATGGGTGGATCCAGCATTGTGGATGGACAATTGGAACTTATGATTCATAGGAGGTTGTACTATGATGATGCTCGGGGTGTTGGAGAAGCACTAAATGAAACTCTATACATTCAAGATGATTGCAAAGGACTAACAGTAAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

92

Amino Acids

10.36

Weight (kDa)

5.17

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38C	PF07748	4 - 69	1.5e-12	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	135, 148
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
AlwI	GGATC	2 cut(s)	135, 148
Ama87I	CYCGRG	1 cut(s)	204
AseI	ATTAAT	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	140
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	13
BglII	AGATCT	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	29, 142
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	64, 160
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	128, 140, 272
BspLI	GGNNCC	2 cut(s)	29, 142
BspPI	GGATC	2 cut(s)	135, 148
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	128, 140, 272
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	64, 160
BstKTI	GATC	3 cut(s)	131, 143, 275
BstMBI	GATC	3 cut(s)	128, 140, 272
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	13
BstX2I	RGATCY	2 cut(s)	128, 140
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	2 cut(s)	128, 140
BtsCI	GGATG	2 cut(s)	64, 160
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	190
CviJI	RGCY	1 cut(s)	109
CviKI_1	RGCY	1 cut(s)	109
CviQI	GTAC	1 cut(s)	190
DpnI	GATC	3 cut(s)	130, 142, 274
DpnII	GATC	3 cut(s)	128, 140, 272
Eco47I	GGWCC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	30
FaiI	YATR	7 cut(s)	15, 134, 173, 180, 195, 238, 277
FaqI	GGGAC	1 cut(s)	41
FokI	GGATG	2 cut(s)	51, 167
HinfI	GANTC	5 cut(s)	4, 9, 40, 81, 175
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	128, 140, 272
LpnPI	CCDG	7 cut(s)	10, 17, 39, 44, 60, 62, 157
LweI	GCATC	1 cut(s)	190
MalI	GATC	3 cut(s)	130, 142, 274
MboI	GATC	3 cut(s)	128, 140, 272
MfeI	CAATTG	1 cut(s)	161
MflI	RGATCY	2 cut(s)	128, 140
MluCI	AATT	2 cut(s)	58, 161
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	32
NdeII	GATC	3 cut(s)	128, 140, 272
NlaIV	GGNNCC	2 cut(s)	29, 142
PfeI	GAWTC	4 cut(s)	4, 40, 81, 175
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PpuMI	RGGWCCY	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	29, 142
PspPI	GGNCC	1 cut(s)	28
PspPPI	RGGWCCY	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	128, 140
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	3 cut(s)	128, 140, 272
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	4 cut(s)	33, 49, 111, 188
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	2 cut(s)	58, 161
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	7
TasI	AATT	2 cut(s)	58, 161
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	4 cut(s)	4, 40, 81, 175
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	167, 243
VpaK11BI	GGWCC	1 cut(s)	28
VspI	ATTAAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.