Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Reverse (-)

7563129 .. 7572977

Gene Structure 9849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG099300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGGTTGTGGCTTGCTTTAGGCTTGTATTAGTATTCACTGTGTTTCTACATGCGGCGGAGTCCAAGTACGTACAGTACAATACAACATCGGTCCTTGTTCCTGGAAAGCTGAACGTTCATTTGGTCGCTCACACCCACGACGACGTCGGATGGCTGAAGACCATGGACCAGTACTACGTTGGCTCCAATAATTCCTTCCAGGAAGCTTGTGTTCAGAACGTGCTGGATTCGTTGGTACTGGCATTGTTGGCCGATAAGAACCGCAAGTTTGTTTACACTGAGCAGATTCGAGTCTGTAGAAAAGACTGGGACCTGGGAGTGAATCAACCTGTTGCTGGAAATTATCATCCGATTAATCTGGGAATCTACACGAAAGATAGTAGCACAGAGCTGTCAGTATTAGTAGATAGATCTATGGGTGGATCCAGCATTGTGGATGGACAATTGGAACTTATGATTCATAGGAGGTTGTACTATGATGATGCTCGGGGTGTTGGAGAAGCACTAAATGAAACTCTATACATTCAAGATGATTGCAAAGGACTAACAGATGGAGATCAGTGGACAAAATCTTATGTCACAACATTTTCAGGAATGAATCCTTCCTACAGTTTACCAGATAATGTTGCAATATTAACCATCCAGGAGCTGGAAGATGGAAAAGTTCTCTTTCGCCTGGCACATTTATACGAGATTGAAGAGGACAAGGACCTTTCAGTTATGGCGAGTGTAGAACTAAAAAAAGTGTTTGCAGATAAGAGGGTAGATAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

259

Amino Acids

29.26

Weight (kDa)

5.14

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 96	2.4e-11	Glycosyl hydrolases family 38 N-terminal domain
Glyco_hydro_38C	PF07748	91 - 164	3.7e-12	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	652
AciI	CCGC	4 cut(s)	5, 56, 59, 265
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	2 cut(s)	420, 433
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	6 cut(s)	71, 75, 80, 176, 240, 476
AfiI	CCNNNNNNNGG	2 cut(s)	338, 652
AgsI	TTSAA	2 cut(s)	530, 701
AjnI	CCWGG	5 cut(s)	103, 201, 315, 645, 678
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 182, 214
AluBI	AGCT	4 cut(s)	112, 209, 394, 652
AluI	AGCT	4 cut(s)	112, 209, 394, 652
AlwI	GGATC	2 cut(s)	420, 433
AlwNI	CAGNNNCTG	1 cut(s)	652
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	1 cut(s)	252
AseI	ATTAAT	1 cut(s)	357
AspS9I	GGNCC	4 cut(s)	94, 169, 313, 712
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	4 cut(s)	94, 169, 313, 712
BamHI	GGATCC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	167
BccI	CCATC	5 cut(s)	147, 434, 548, 650, 653
BciT130I	CCWGG	5 cut(s)	105, 203, 317, 647, 680
BfmI	CTRYAG	2 cut(s)	298, 610
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	5 cut(s)	105, 203, 317, 647, 680
Bme18I	GGWCC	4 cut(s)	94, 169, 313, 712
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	4 cut(s)	94, 169, 313, 712
BmiI	GGNNCC	3 cut(s)	187, 314, 427
BmrFI	CCNGG	5 cut(s)	105, 203, 317, 647, 680
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	475
BmuI	ACTGGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	165, 316
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 652
Bse1I	ACTGG	3 cut(s)	172, 246, 314
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	5 cut(s)	105, 203, 317, 647, 680
BseDI	CCNNGG	2 cut(s)	165, 316
BseGI	GGATG	4 cut(s)	158, 349, 445, 642
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	338, 652
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	3 cut(s)	172, 246, 314
BshFI	GGCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	338, 652
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	413, 425, 559
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	4 cut(s)	5, 56, 59, 265
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	3 cut(s)	187, 314, 427
BspPI	GGATC	2 cut(s)	420, 433
BsrI	ACTGG	3 cut(s)	172, 246, 314
BssECI	CCNNGG	2 cut(s)	165, 316
BssMI	GATC	3 cut(s)	413, 425, 559
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	5 cut(s)	105, 203, 317, 647, 680
Bst4CI	ACNGT	3 cut(s)	43, 78, 614
Bst6I	CTCTTC	1 cut(s)	696
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	4 cut(s)	158, 349, 445, 642
BstKTI	GATC	3 cut(s)	416, 428, 562
BstMBI	GATC	3 cut(s)	413, 425, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 251
BstNI	CCWGG	5 cut(s)	105, 203, 317, 647, 680
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	5 cut(s)	103, 201, 315, 645, 678
BstSFI	CTRYAG	2 cut(s)	298, 610
BstSNI	TACGTA	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	413, 425
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	2 cut(s)	413, 425
BsuRI	GGCC	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	158, 349, 445, 642
BtsIMutI	CAGTG	3 cut(s)	39, 279, 569
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	652
Cfr13I	GGNCC	4 cut(s)	94, 169, 313, 712
Csp6I	GTAC	6 cut(s)	70, 74, 79, 175, 239, 475
CviAII	CATG	2 cut(s)	53, 166
CviJI	RGCY	9 cut(s)	14, 25, 112, 157, 186, 209, 254, 394, 652
CviKI_1	RGCY	9 cut(s)	14, 25, 112, 157, 186, 209, 254, 394, 652
CviQI	GTAC	6 cut(s)	70, 74, 79, 175, 239, 475
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	3 cut(s)	415, 427, 561
DpnII	GATC	3 cut(s)	413, 425, 559
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
EciI	GGCGGA	1 cut(s)	74
Eco105I	TACGTA	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	4 cut(s)	94, 169, 313, 712
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	2 cut(s)	313, 712
EcoRII	CCWGG	5 cut(s)	103, 201, 315, 645, 678
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	56, 169
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	2 cut(s)	52, 165
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	4 cut(s)	165, 336, 452, 629
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	56, 169
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	8 cut(s)	62, 230, 289, 294, 325, 366, 460, 601
Hpy166II	GTNNAC	3 cut(s)	277, 567, 617
Hpy188I	TCNGA	3 cut(s)	152, 219, 354
Hpy188III	TCNNGA	2 cut(s)	530, 594
Hpy8I	GTNNAC	3 cut(s)	277, 567, 617
Hpy99I	CGWCG	3 cut(s)	146, 149, 152
HpyAV	CCTTC	2 cut(s)	208, 615
HpyCH4III	ACNGT	3 cut(s)	43, 78, 614
HpyCH4IV	ACGT	5 cut(s)	72, 117, 147, 180, 222
HpyCH4V	TGCA	3 cut(s)	540, 632, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 251
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	5 cut(s)	72, 117, 147, 180, 222
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	56, 169
Kzo9I	GATC	3 cut(s)	413, 425, 559
LmnI	GCTCC	2 cut(s)	191, 649
LweI	GCATC	1 cut(s)	475
MaeII	ACGT	5 cut(s)	72, 117, 147, 180, 222
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	3 cut(s)	415, 427, 561
MboI	GATC	3 cut(s)	413, 425, 559
MboII	GAAGA	3 cut(s)	172, 668, 713
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	2 cut(s)	413, 425
MluCI	AATT	3 cut(s)	193, 343, 446
MlyI	GAGTC	2 cut(s)	71, 303
MmeI	TCCRAC	2 cut(s)	130, 478
MnlI	CCTC	3 cut(s)	462, 697, 756
MseI	TTAA	2 cut(s)	357, 638
MspR9I	CCNGG	5 cut(s)	105, 203, 317, 647, 680
MunI	CAATTG	1 cut(s)	446
MvaI	CCWGG	5 cut(s)	105, 203, 317, 647, 680
MwoI	GCNNNNNNNGC	2 cut(s)	11, 251
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	413, 425, 559
NlaIII	CATG	2 cut(s)	56, 169
NlaIV	GGNNCC	3 cut(s)	187, 314, 427
NmuCI	GTSAC	1 cut(s)	580
NspI	RCATGY	1 cut(s)	56
PfeI	GAWTC	6 cut(s)	230, 289, 325, 366, 460, 601
PflFI	GACNNNGTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	652
PfoI	TCCNGGA	3 cut(s)	103, 201, 645
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	70, 302
PpsI	GAGTC	2 cut(s)	70, 302
Ppu21I	YACGTR	1 cut(s)	73
PpuMI	RGGWCCY	2 cut(s)	313, 712
PshBI	ATTAAT	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	117
Psp5II	RGGWCCY	2 cut(s)	313, 712
Psp6I	CCWGG	5 cut(s)	103, 201, 315, 645, 678
PspGI	CCWGG	5 cut(s)	103, 201, 315, 645, 678
PspN4I	GGNNCC	3 cut(s)	187, 314, 427
PspPI	GGNCC	4 cut(s)	94, 169, 313, 712
PspPPI	RGGWCCY	2 cut(s)	313, 712
PstNI	CAGNNNCTG	1 cut(s)	652
PsuI	RGATCY	2 cut(s)	413, 425
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	6 cut(s)	71, 75, 80, 176, 240, 476
RsaNI	GTAC	6 cut(s)	70, 74, 79, 175, 239, 475
SaqAI	TTAA	2 cut(s)	357, 638
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	413, 425, 559
Sau96I	GGNCC	4 cut(s)	94, 169, 313, 712
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	2 cut(s)	71, 303
ScrFI	CCNGG	5 cut(s)	105, 203, 317, 647, 680
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	2 cut(s)	298, 610
SinI	GGWCC	4 cut(s)	94, 169, 313, 712
SnaBI	TACGTA	1 cut(s)	73
Sse9I	AATT	3 cut(s)	193, 343, 446
SsiI	CCGC	4 cut(s)	5, 56, 59, 265
SspI	AATATT	1 cut(s)	636
StyD4I	CCNGG	5 cut(s)	103, 201, 315, 645, 678
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	43, 78, 614
TaiI	ACGT	5 cut(s)	75, 120, 150, 183, 225
TaqI	TCGA	1 cut(s)	292
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	193, 343, 446
TatI	WGTACW	3 cut(s)	78, 174, 474
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	6 cut(s)	230, 289, 325, 366, 460, 601
Tru1I	TTAA	2 cut(s)	357, 638
Tru9I	TTAA	2 cut(s)	357, 638
TscAI	CASTG	3 cut(s)	46, 286, 569
TseFI	GTSAC	1 cut(s)	580
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	4 cut(s)	110, 452, 528, 614
TspRI	CASTG	3 cut(s)	46, 286, 569
Tth111I	GACNNNGTC	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	652
VpaK11BI	GGWCC	4 cut(s)	94, 169, 313, 712
VspI	ATTAAT	1 cut(s)	357
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	2 cut(s)	179, 649
ZraI	GACGTC	1 cut(s)	148
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.