Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Reverse (-)

8404222 .. 8414310

Gene Structure 10089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG101000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTGGTTGTGGCTTGCTTTAGGCTTGTATTAGTATTCACTGTGTTTCTACATGCGGCGGAGTCCAAGTACGTACAGTACAATACAACATCGGTCCTTGTTCCTGGAAAGCTGAACGTTCATTTGGTCGCTCACACCCACGACGACGTCGGATGGCTGAAGACCATGGACCAGTACTACGTTGGCTCCAATAATTCCTTCCAGGAAGCTTGTGTTCAGAACGTGCTGGATTCGTTGGTACTGGCATTGTTGGCCGATAAGAACCGCAAGTTTGTTTACACTGAGCAGATTAATCTGGGAATCTACACGAAAGATAGTAGCACAGAGCTGTCAGTATTAGTAGATAGATCTATGGGTGGATCCAGCATTGTGGATGGACAATTGGAACTTATGATTCATAGGAGGTTGTACTATGATGATGCTCGGGGTGTTGGAGAAGCACTAAATGAAACTCTATACATTCAAGATGATTGCAAAGGACTAACAGATGGAGATCAGTGGACAAAATCTTATGTCACAACATTTTCAGGAATGAATCCTTCCTACAGTTTACCAAATAATGTTGCAATATTAACCATCCAGGAGCTGGAAGATGGAAAAGTTCTCTTTCGCCTGGCACATTTATACGAGGAAGAGCTGAAATGGAGAAGAAGAGAACCAAATGTGTCGAGGGGAGGACCTGTTGATCCAACAGAGCTGGTGGTGGATCTTGCTCCAATGGAAATTCGAACATTTACGATCAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

249

Amino Acids

28.15

Weight (kDa)

5.04

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 109	4.6e-12	Glycosyl hydrolases family 38 N-terminal domain
Glyco_hydro_38C	PF07748	94 - 142	2.5e-09	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	586
AciI	CCGC	3 cut(s)	56, 59, 265
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	4 cut(s)	354, 367, 680, 714
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	723
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	6 cut(s)	71, 75, 80, 176, 240, 410
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	4 cut(s)	103, 201, 579, 612
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 182, 214
AluBI	AGCT	6 cut(s)	112, 209, 328, 586, 637, 697
AluI	AGCT	6 cut(s)	112, 209, 328, 586, 637, 697
AlwI	GGATC	4 cut(s)	354, 367, 680, 714
AlwNI	CAGNNNCTG	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	1 cut(s)	252
ApoI	RAATTY	1 cut(s)	723
AseI	ATTAAT	1 cut(s)	291
AspS9I	GGNCC	3 cut(s)	94, 169, 677
AsuII	TTCGAA	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	3 cut(s)	94, 169, 677
BamHI	GGATCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	167
BccI	CCATC	5 cut(s)	147, 368, 482, 584, 587
BciT130I	CCWGG	4 cut(s)	105, 203, 581, 614
BfaI	CTAG	1 cut(s)	748
BfmI	CTRYAG	1 cut(s)	544
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	4 cut(s)	105, 203, 581, 614
Bme18I	GGWCC	3 cut(s)	94, 169, 677
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	3 cut(s)	94, 169, 677
BmiI	GGNNCC	2 cut(s)	187, 361
BmrFI	CCNGG	4 cut(s)	105, 203, 581, 614
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	727
BsaAI	YACGTR	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	6 cut(s)	53, 83, 170, 200, 666, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	172, 246
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	4 cut(s)	105, 203, 581, 614
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	158, 379, 576
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	172, 246
BshFI	GGCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	586
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	423
Bsp119I	TTCGAA	1 cut(s)	727
Bsp143I	GATC	6 cut(s)	347, 359, 493, 685, 706, 738
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	3 cut(s)	56, 59, 265
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	187, 361
BspPI	GGATC	4 cut(s)	354, 367, 680, 714
BspQI	GCTCTTC	1 cut(s)	627
BspT104I	TTCGAA	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	172, 246
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	6 cut(s)	347, 359, 493, 685, 706, 738
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	4 cut(s)	105, 203, 581, 614
Bst4CI	ACNGT	3 cut(s)	43, 78, 548
Bst6I	CTCTTC	2 cut(s)	627, 646
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	727
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	158, 379, 576
BstKTI	GATC	6 cut(s)	350, 362, 496, 688, 709, 741
BstMBI	GATC	6 cut(s)	347, 359, 493, 685, 706, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	4 cut(s)	105, 203, 581, 614
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	4 cut(s)	103, 201, 579, 612
BstSFI	CTRYAG	1 cut(s)	544
BstSNI	TACGTA	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	3 cut(s)	347, 359, 706
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	3 cut(s)	347, 359, 706
BsuRI	GGCC	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	158, 379, 576
BtsIMutI	CAGTG	3 cut(s)	39, 279, 503
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	586
Cfr13I	GGNCC	3 cut(s)	94, 169, 677
Csp6I	GTAC	6 cut(s)	70, 74, 79, 175, 239, 409
CviAII	CATG	2 cut(s)	53, 166
CviQI	GTAC	6 cut(s)	70, 74, 79, 175, 239, 409
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	6 cut(s)	349, 361, 495, 687, 708, 740
DpnII	GATC	6 cut(s)	347, 359, 493, 685, 706, 738
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	627, 646
EarI	CTCTTC	2 cut(s)	627, 646
EciI	GGCGGA	1 cut(s)	74
Eco105I	TACGTA	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	94, 169, 677
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRII	CCWGG	4 cut(s)	103, 201, 579, 612
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	56, 169
FaiI	YATR	9 cut(s)	54, 167, 353, 392, 399, 414, 457, 513, 625
FatI	CATG	2 cut(s)	52, 165
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	3 cut(s)	165, 386, 563
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	748
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	56, 169
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	5 cut(s)	62, 230, 300, 394, 535
Hpy166II	GTNNAC	3 cut(s)	277, 501, 551
Hpy188I	TCNGA	2 cut(s)	152, 219
Hpy188III	TCNNGA	2 cut(s)	464, 528
Hpy8I	GTNNAC	3 cut(s)	277, 501, 551
Hpy99I	CGWCG	3 cut(s)	146, 149, 152
HpyAV	CCTTC	2 cut(s)	208, 549
HpyCH4III	ACNGT	3 cut(s)	43, 78, 548
HpyCH4IV	ACGT	5 cut(s)	72, 117, 147, 180, 222
HpyCH4V	TGCA	2 cut(s)	474, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	5 cut(s)	72, 117, 147, 180, 222
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	56, 169
Kzo9I	GATC	6 cut(s)	347, 359, 493, 685, 706, 738
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	3 cut(s)	191, 583, 718
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	748
MaeII	ACGT	5 cut(s)	72, 117, 147, 180, 222
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	6 cut(s)	349, 361, 495, 687, 708, 740
MboI	GATC	6 cut(s)	347, 359, 493, 685, 706, 738
MboII	GAAGA	5 cut(s)	172, 602, 644, 660, 663
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	3 cut(s)	347, 359, 706
MluCI	AATT	3 cut(s)	193, 380, 723
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	3 cut(s)	130, 412, 713
MnlI	CCTC	4 cut(s)	396, 622, 663, 668
MseI	TTAA	2 cut(s)	291, 572
MspR9I	CCNGG	4 cut(s)	105, 203, 581, 614
MunI	CAATTG	1 cut(s)	380
MvaI	CCWGG	4 cut(s)	105, 203, 581, 614
MwoI	GCNNNNNNNGC	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	6 cut(s)	347, 359, 493, 685, 706, 738
NlaIII	CATG	2 cut(s)	56, 169
NlaIV	GGNNCC	2 cut(s)	187, 361
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	56
NspV	TTCGAA	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	627
PfeI	GAWTC	4 cut(s)	230, 300, 394, 535
PflFI	GACNNNGTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	586
PfoI	TCCNGGA	3 cut(s)	103, 201, 579
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	677
PshBI	ATTAAT	1 cut(s)	291
Psp1406I	AACGTT	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	4 cut(s)	103, 201, 579, 612
PspGI	CCWGG	4 cut(s)	103, 201, 579, 612
PspN4I	GGNNCC	2 cut(s)	187, 361
PspPI	GGNCC	3 cut(s)	94, 169, 677
PspPPI	RGGWCCY	1 cut(s)	677
PstNI	CAGNNNCTG	1 cut(s)	586
PsuI	RGATCY	3 cut(s)	347, 359, 706
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	6 cut(s)	71, 75, 80, 176, 240, 410
RsaNI	GTAC	6 cut(s)	70, 74, 79, 175, 239, 409
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	291, 572
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	6 cut(s)	347, 359, 493, 685, 706, 738
Sau96I	GGNCC	3 cut(s)	94, 169, 677
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	4 cut(s)	105, 203, 581, 614
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	544
SfuI	TTCGAA	1 cut(s)	727
SinI	GGWCC	3 cut(s)	94, 169, 677
SnaBI	TACGTA	1 cut(s)	73
Sse9I	AATT	3 cut(s)	193, 380, 723
SsiI	CCGC	3 cut(s)	56, 59, 265
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	1 cut(s)	748
StyD4I	CCNGG	4 cut(s)	103, 201, 579, 612
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	43, 78, 548
TaiI	ACGT	5 cut(s)	75, 120, 150, 183, 225
TaqI	TCGA	2 cut(s)	668, 727
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	193, 380, 723
TatI	WGTACW	3 cut(s)	78, 174, 408
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	4 cut(s)	230, 300, 394, 535
Tru1I	TTAA	2 cut(s)	291, 572
Tru9I	TTAA	2 cut(s)	291, 572
TscAI	CASTG	3 cut(s)	46, 286, 503
TseFI	GTSAC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	4 cut(s)	110, 386, 462, 548
TspRI	CASTG	3 cut(s)	46, 286, 503
Tth111I	GACNNNGTC	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	3 cut(s)	94, 169, 677
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	723
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	2 cut(s)	179, 583
XspI	CTAG	1 cut(s)	748
ZraI	GACGTC	1 cut(s)	148
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.