Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Forward (+)

4583421 .. 4587067

Gene Structure 3647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG042700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGAATTGCGCAGCACCACGATGCAGTCACAGGCACTTCTAAACAGCACACAACAAGTGACTATGCAAAGCGCCTGTTTATTGGTGCCTCTGAGGCAGAAGCTGTTGTCAGTGCTGCTCTATCATGCCTAACTACAGGTAAATCAGGAGAGCAATGTAAGGACCCAGCATTGACTTTTAGCCAGATCGGTCCAATTCCCACCGAGGATTATACTGGAAGAGAGGTCATCACTAGAATGACAACTAATATGACCACAGAGAAGGTGTTCTACACTGATTCAAATGGAAGGGATTTCATAAAACGGGTTCGAGATTATAGATCCGACTGGTTCCTTTTGGTTAACCAACCTGTAGCAGGAAATTATTATCCATTAAATCTTGGCATATTTACCTCGGATAAGAAATATGAGTTTTCGGTCCTGGTAGATCGTGCCACTGGAGGAGCTAGCATTAAAGATGGAGAACTGGAGCTCATGCTTCATAGGTTTGAGTTTGGCATACTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0015923 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

169

Amino Acids

18.77

Weight (kDa)

5.79

Isoelectric Point (pI)

22.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha-mann_mid	PF09261	1 - 44	3.5e-08	Alpha mannosidase middle domain
Glyco_hydro_38C	PF07748	73 - 163	2.2e-20	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	3 cut(s)	104, 446, 472
AluI	AGCT	3 cut(s)	104, 446, 472
Alw21I	GWGCWC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	13, 116
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	13, 75
AspS9I	GGNCC	3 cut(s)	163, 191, 418
AsuNHI	GCTAGC	1 cut(s)	446
AvaII	GGWCC	3 cut(s)	163, 191, 418
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	474
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	25, 103
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	422
BfaI	CTAG	2 cut(s)	234, 447
BfmI	CTRYAG	2 cut(s)	135, 351
BfoI	RGCGCY	1 cut(s)	76
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	14, 117
BlsI	GCNGC	2 cut(s)	15, 118
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	3 cut(s)	163, 191, 418
BmgT120I	GGNCC	3 cut(s)	163, 191, 418
BmiI	GGNNCC	3 cut(s)	88, 165, 332
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	13
BmtI	GCTAGC	1 cut(s)	450
BpmI	CTGGAG	2 cut(s)	459, 488
BsaJI	CCNNGG	2 cut(s)	204, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	4 cut(s)	220, 332, 442, 471
Bse3DI	GCAATG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	204, 393
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	4 cut(s)	220, 332, 442, 471
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	25, 103
BseYI	CCCAGC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	186, 320, 427
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	3 cut(s)	88, 165, 332
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	161
BsrI	ACTGG	4 cut(s)	220, 332, 442, 471
BssECI	CCNNGG	2 cut(s)	204, 393
BssMI	GATC	3 cut(s)	186, 320, 427
Bst2UI	CCWGG	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	93
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	13, 75
BstKTI	GATC	3 cut(s)	189, 323, 430
BstMBI	GATC	3 cut(s)	186, 320, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	2 cut(s)	135, 351
BstV1I	GCAGC	2 cut(s)	25, 103
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BtsIMutI	CAGTG	3 cut(s)	118, 273, 435
Cac8I	GCNNGC	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	2 cut(s)	13, 75
Cfr13I	GGNCC	3 cut(s)	163, 191, 418
CviAII	CATG	2 cut(s)	126, 475
CviJI	RGCY	4 cut(s)	104, 183, 446, 472
CviKI_1	RGCY	4 cut(s)	104, 183, 446, 472
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	3 cut(s)	188, 322, 429
DpnII	GATC	3 cut(s)	186, 320, 427
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	3 cut(s)	163, 191, 418
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	2 cut(s)	129, 478
FatI	CATG	2 cut(s)	125, 474
Fnu4HI	GCNGC	2 cut(s)	14, 117
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	14, 117
FspBI	CTAG	2 cut(s)	234, 447
FspI	TGCGCA	1 cut(s)	12
GlaI	GCGC	2 cut(s)	12, 74
GluI	GCNGC	2 cut(s)	14, 117
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	2 cut(s)	459, 488
HaeII	RGCGCY	1 cut(s)	76
HhaI	GCGC	2 cut(s)	13, 75
Hin1II	CATG	2 cut(s)	129, 478
Hin6I	GCGC	2 cut(s)	11, 73
HinP1I	GCGC	2 cut(s)	11, 73
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	278
HpaI	GTTAAC	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	94, 325, 397
Hpy188III	TCNNGA	2 cut(s)	147, 311
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	256, 282
HpyCH4V	TGCA	2 cut(s)	26, 68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	129, 478
HspAI	GCGC	2 cut(s)	11, 73
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	186, 320, 427
LmnI	GCTCC	2 cut(s)	443, 469
Lsp1109I	GCAGC	2 cut(s)	25, 103
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	234, 447
MaeIII	GTNAC	2 cut(s)	28, 59
MalI	GATC	3 cut(s)	188, 322, 429
MboI	GATC	3 cut(s)	186, 320, 427
MboII	GAAGA	1 cut(s)	231
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	4 cut(s)	6, 195, 361, 505
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	6 cut(s)	88, 100, 199, 217, 403, 434
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	4 cut(s)	342, 374, 453, 508
MslI	CAYNNNNRTG	2 cut(s)	21, 236
MspR9I	CCNGG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	3 cut(s)	186, 320, 427
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	2 cut(s)	129, 478
NlaIV	GGNNCC	3 cut(s)	88, 165, 332
NmuCI	GTSAC	2 cut(s)	28, 59
NsbI	TGCGCA	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	15, 118
PpuMI	RGGWCCY	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	3 cut(s)	88, 165, 332
PspPI	GGNCC	3 cut(s)	163, 191, 418
PspPPI	RGGWCCY	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	21, 236
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	4 cut(s)	342, 374, 453, 508
SatI	GCNGC	2 cut(s)	14, 117
Sau3AI	GATC	3 cut(s)	186, 320, 427
Sau96I	GGNCC	3 cut(s)	163, 191, 418
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	9 cut(s)	106, 142, 228, 267, 352, 395, 448, 474, 488
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	135, 351
SinI	GGWCC	3 cut(s)	163, 191, 418
SmiMI	CAYNNNNRTG	2 cut(s)	21, 236
Sse9I	AATT	4 cut(s)	6, 195, 361, 505
SspMI	CTAG	2 cut(s)	234, 447
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	420
TaqI	TCGA	1 cut(s)	310
TaqII	GACCGA	2 cut(s)	179, 406
TasI	AATT	4 cut(s)	6, 195, 361, 505
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	4 cut(s)	342, 374, 453, 508
Tru9I	TTAA	4 cut(s)	342, 374, 453, 508
TscAI	CASTG	3 cut(s)	118, 280, 442
TseFI	GTSAC	2 cut(s)	28, 59
TseI	GCWGC	2 cut(s)	13, 116
Tsp45I	GTSAC	2 cut(s)	28, 59
TspDTI	ATGAA	2 cut(s)	286, 470
TspRI	CASTG	3 cut(s)	118, 280, 442
VpaK11BI	GGWCC	3 cut(s)	163, 191, 418
XagI	CCTNNNNNAGG	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	2 cut(s)	234, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.