Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Reverse (-)

24263175 .. 24264749

Gene Structure 1575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G020620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTGGCTGGGGACTACACATCGAAGGTCACAGCACTATGTTCAGCACAGCTCTCAGCTATATTTGTATGCGTATTCTCGGAGAAGGACCTGATGATGGGGGCCAAGACAATGCTTGTCCAAGAGCTAGAAAGTGGATTCTTGATCATGATGGTGTCACACACATGCCCTCTTGGGGAAAGACTTGGCTTTCGTCCAAATACTTTTAGCCTTGGAGATGCTTTAGGAATTGCGCAGCACCACGATGCAGTCACAGGCACTTCTAAACAGCACACAACAAGTGACTATGCAAAGCGCCTGTTTATTGGTGCCTCTGAGGCAGAAGCTGTTGTCAGTGCTACTCTATCATGCCTAACTACAGGTAAATCAGGAGAGCAATGTAAGGACCCAGCATTGACTTTTAGCCAGGTAAACTTGAAGGTCTTTCGTGGACCACTAGTCGATGAGATTCACCAAGAGTTCAGTTCATGGATCTATCAGGTCACTAGACTTTACAGGGACAAACAGCACGCGGAAGTTGAGTTCACTGTGAGTCTATATCTGCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0015923 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

183

Amino Acids

20.13

Weight (kDa)

5.83

Isoelectric Point (pI)

21.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha-mann_mid	PF09261	71 - 117	1.3e-08	Alpha mannosidase middle domain
Glyco_hydro_38C	PF07748	135 - 178	1.1e-07	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	308
AccII	CGCG	1 cut(s)	512
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	1 cut(s)	479
AfiI	CCNNNNNNNGG	2 cut(s)	97, 175
AgsI	TTSAA	1 cut(s)	418
AhdI	GACNNNNNGTC	1 cut(s)	437
AhlI	ACTAGT	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	405
AloI	GAACNNNNNNTCC	2 cut(s)	506, 538
AluBI	AGCT	4 cut(s)	52, 59, 127, 326
AluI	AGCT	4 cut(s)	52, 59, 127, 326
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspLEI	GCGC	2 cut(s)	235, 297
AspS9I	GGNCC	4 cut(s)	88, 102, 385, 431
AsuHPI	GGTGA	1 cut(s)	443
AvaII	GGWCC	3 cut(s)	88, 385, 431
BanI	GGYRCC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	2 cut(s)	91, 145
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	1 cut(s)	144
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	3 cut(s)	128, 437, 486
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	298
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	3 cut(s)	88, 385, 431
BmeRI	GACNNNNNGTC	1 cut(s)	437
BmgT120I	GGNCC	4 cut(s)	88, 102, 385, 431
BmiI	GGNNCC	3 cut(s)	103, 310, 387
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	208, 235
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 175
Bse3DI	GCAATG	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	97, 175
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	69, 306
BseXI	GCAGC	1 cut(s)	247
BseYI	CCCAGC	2 cut(s)	8, 388
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	26, 512
BslI	CCNNNNNNNGG	2 cut(s)	97, 175
BsmFI	GGGAC	2 cut(s)	26, 512
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	144, 471
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	68, 307
BspFNI	CGCG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	103, 310, 387
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	144, 471
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	529
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	55, 315
BstFNI	CGCG	1 cut(s)	512
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	235, 297
BstKTI	GATC	2 cut(s)	147, 474
BstMBI	GATC	2 cut(s)	144, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	340, 525
Cac8I	GCNNGC	1 cut(s)	510
CaiI	CAGNNNCTG	1 cut(s)	326
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	2 cut(s)	235, 297
Cfr13I	GGNCC	4 cut(s)	88, 102, 385, 431
CviAII	CATG	4 cut(s)	148, 165, 348, 468
CviJI	RGCY	9 cut(s)	8, 52, 59, 104, 127, 189, 210, 326, 405
CviKI_1	RGCY	9 cut(s)	8, 52, 59, 104, 127, 189, 210, 326, 405
DdeI	CTNAG	2 cut(s)	55, 315
DpnI	GATC	2 cut(s)	146, 473
DpnII	GATC	2 cut(s)	144, 471
DriI	GACNNNNNGTC	1 cut(s)	437
Eam1105I	GACNNNNNGTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	211
Eco47I	GGWCC	3 cut(s)	88, 385, 431
EcoO109I	RGGNCCY	2 cut(s)	88, 385
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	4 cut(s)	151, 168, 351, 471
FaiI	YATR	9 cut(s)	40, 62, 70, 149, 166, 288, 349, 469, 538
FaqI	GGGAC	2 cut(s)	26, 512
FatI	CATG	4 cut(s)	147, 164, 347, 467
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	3 cut(s)	128, 437, 486
FspI	TGCGCA	1 cut(s)	234
GlaI	GCGC	2 cut(s)	234, 296
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	2 cut(s)	12, 392
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	104
HhaI	GCGC	2 cut(s)	235, 297
Hin1II	CATG	4 cut(s)	151, 168, 351, 471
Hin6I	GCGC	2 cut(s)	233, 295
HinP1I	GCGC	2 cut(s)	233, 295
HinfI	GANTC	3 cut(s)	138, 448, 532
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	3 cut(s)	412, 431, 525
Hpy188I	TCNGA	2 cut(s)	82, 316
Hpy188III	TCNNGA	3 cut(s)	142, 148, 369
Hpy8I	GTNNAC	3 cut(s)	412, 431, 525
HpyAV	CCTTC	3 cut(s)	19, 79, 412
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4V	TGCA	2 cut(s)	248, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	55, 315
Hsp92II	CATG	4 cut(s)	151, 168, 351, 471
HspAI	GCGC	2 cut(s)	233, 295
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	144, 471
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	2 cut(s)	208, 235
MaeI	CTAG	3 cut(s)	128, 437, 486
MaeIII	GTNAC	5 cut(s)	28, 156, 250, 281, 481
MalI	GATC	2 cut(s)	146, 473
MboI	GATC	2 cut(s)	144, 471
MflI	RGATCY	1 cut(s)	471
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	541
MnlI	CCTC	3 cut(s)	180, 310, 322
MseI	TTAA	1 cut(s)	550
MslI	CAYNNNNRTG	3 cut(s)	152, 163, 243
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	2 cut(s)	144, 471
NlaIII	CATG	4 cut(s)	151, 168, 351, 471
NlaIV	GGNNCC	3 cut(s)	103, 310, 387
NmuCI	GTSAC	5 cut(s)	28, 156, 250, 281, 481
NsbI	TGCGCA	1 cut(s)	234
NspI	RCATGY	1 cut(s)	168
PagI	TCATGA	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	138, 448
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
PpuMI	RGGWCCY	2 cut(s)	88, 385
Psp5II	RGGWCCY	2 cut(s)	88, 385
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	2 cut(s)	8, 388
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	103, 310, 387
PspPI	GGNCC	4 cut(s)	88, 102, 385, 431
PspPPI	RGGWCCY	2 cut(s)	88, 385
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	471
RseI	CAYNNNNRTG	3 cut(s)	152, 163, 243
SaqAI	TTAA	1 cut(s)	550
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	2 cut(s)	144, 471
Sau96I	GGNCC	4 cut(s)	88, 102, 385, 431
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	407
SfaNI	GCATC	2 cut(s)	208, 235
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	3 cut(s)	88, 385, 431
SmiMI	CAYNNNNRTG	3 cut(s)	152, 163, 243
SpeI	ACTAGT	1 cut(s)	436
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	3 cut(s)	128, 437, 486
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	529
TaqI	TCGA	2 cut(s)	23, 441
TasI	AATT	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	138, 448
Tru1I	TTAA	1 cut(s)	550
Tru9I	TTAA	1 cut(s)	550
TscAI	CASTG	2 cut(s)	340, 532
TseFI	GTSAC	5 cut(s)	28, 156, 250, 281, 481
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	5 cut(s)	28, 156, 250, 281, 481
TspDTI	ATGAA	1 cut(s)	456
TspRI	CASTG	2 cut(s)	340, 532
VpaK11BI	GGWCC	3 cut(s)	88, 385, 431
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	3 cut(s)	128, 437, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.