Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Forward (+)

9251340 .. 9252605

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTGCTCGGAGCATGGTATACACGAAATCTTCGACCGTTCGATCATTGACTATTACATTTTTGGCGGCACAATCAATCCAATATATGTCGGCCACCACCAATGTAACCCCCTACCATGCGCCACCTACTTAAACCCCTCCGTCAACATTGCCGCCGTCTGCGTTGGGCCCATAAGCCGTCGTCGACGGCGTCACCAAGGCCGCCACGGCCGCCGCAGAAGCCCGAGCTTCAACTTCTACGACCACCCGTGGGAGGACTCCTACAGCTGGATGTCGAAGCTCAACGACAAAGTGGCGTTGCGCCACCTGGACATGTACATGGAGCAAGAGGAGAAGTACACGGAGGCCGTCATGTCCGGCACCGACCGCCTTCAGAGCAAGCTCCAGGCCGAGATGGCCTCTCGCATCGCCTCCGACCTCTCCACCCCTCCCCTGCGCTGGGGCCCCTGGTTCTATTACCGGCGCGTGGAGGAGGGGAAGCAACTTCCGGTGCTCTGCCGGAGACTCGCGAGTTTAAACGACGAGTTCATTTCGCACAAATCGCCTTCCTCCGGATTCGATTTCACATCGGGAAAGGGGATCGATCAGAAGCTCATTGATTACAATCAGGAGTCCCAAAGATGTGGGAGTAAATTGATATGCTTACGAAGATCGGAAGTGTCGCCGGATCGTGGGTTTATAGCTTACACAATTTATGATAAGGAGGCTGACTTGTTTAGATTATCTGTTAGGAATTTGAACTCTGGTGCATTGTGTAGTAAGCCGAAAGTAGAGTGTGTTTCGAATTTGGCTTGGGCCAAAGACGGGCAGGCGTTGCTTTATGTTGTCACTGATGAAAACAGGCGGCCATATAGGCTAGTATTATGCGAAATTGTGCTGTTTATGCATGCTATTCTGTTATACTTGAGTGAAATGTTGGTAATTCTAGCCTATTTGGTCAATCAGGATATATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

319

Amino Acids

36.72

Weight (kDa)

8.46

Isoelectric Point (pI)

70.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccI	GTMKAC	2 cut(s)	19, 184
AccII	CGCG	2 cut(s)	465, 509
AccIII	TCCGGA	1 cut(s)	551
AciI	CCGC	7 cut(s)	66, 153, 202, 211, 214, 367, 844
AclWI	GGATC	2 cut(s)	587, 675
AcoI	YGGCCR	3 cut(s)	91, 208, 845
AcsI	RAATTY	2 cut(s)	733, 784
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	2 cut(s)	317, 338
AfiI	CCNNNNNNNGG	9 cut(s)	250, 253, 267, 438, 439, 466, 551, 671, 804
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	232, 739
AjnI	CCWGG	3 cut(s)	306, 384, 446
AluBI	AGCT	6 cut(s)	228, 267, 280, 382, 592, 683
AluI	AGCT	6 cut(s)	228, 267, 280, 382, 592, 683
Alw21I	GWGCWC	2 cut(s)	8, 495
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	2 cut(s)	587, 675
Ama87I	CYCGRG	1 cut(s)	223
Aor13HI	TCCGGA	1 cut(s)	551
ApaI	GGGCCC	2 cut(s)	171, 446
ApoI	RAATTY	2 cut(s)	733, 784
AspLEI	GCGC	4 cut(s)	122, 303, 438, 465
AspS9I	GGNCC	5 cut(s)	167, 168, 442, 443, 795
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	782
AvaI	CYCGRG	1 cut(s)	223
BaeGI	GKGCMC	2 cut(s)	171, 446
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	171, 446
Bbv12I	GWGCWC	2 cut(s)	8, 495
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	5 cut(s)	140, 162, 203, 223, 332
BciT130I	CCWGG	3 cut(s)	308, 386, 448
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	2 cut(s)	857, 926
BfmI	CTRYAG	1 cut(s)	262
BglI	GCCNNNNNGGC	3 cut(s)	207, 395, 853
BisI	GCNGC	6 cut(s)	67, 153, 202, 211, 214, 845
BlsI	GCNGC	6 cut(s)	68, 154, 203, 212, 215, 846
Bme1390I	CCNGG	3 cut(s)	308, 386, 448
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	5 cut(s)	167, 168, 442, 443, 795
BmiI	GGNNCC	5 cut(s)	169, 361, 443, 444, 445
BmrFI	CCNGG	3 cut(s)	308, 386, 448
BmsI	GCATC	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpmI	CTGGAG	1 cut(s)	368
Bpu14I	TTCGAA	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	925
Bsa29I	ATCGAT	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	603
BsaHI	GRCGYC	1 cut(s)	190
BsaJI	CCNNGG	4 cut(s)	196, 205, 248, 446
BsaWI	WCCGGW	2 cut(s)	487, 551
Bsc4I	CCNNNNNNNGG	9 cut(s)	250, 253, 267, 438, 439, 466, 551, 671, 804
Bse118I	RCCGGY	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	603
BseAI	TCCGGA	1 cut(s)	551
BseBI	CCWGG	3 cut(s)	308, 386, 448
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	4 cut(s)	196, 205, 248, 446
BseGI	GGATG	1 cut(s)	276
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	9 cut(s)	250, 253, 267, 438, 439, 466, 551, 671, 804
BseMI	GCAATG	1 cut(s)	147
BseRI	GAGGAG	2 cut(s)	344, 485
BseSI	GKGCMC	2 cut(s)	171, 446
BseX3I	CGGCCG	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	438
Bsh1236I	CGCG	2 cut(s)	465, 509
Bsh1285I	CGRYCG	3 cut(s)	37, 211, 367
BshNI	GGYRCC	1 cut(s)	359
BshVI	ATCGAT	1 cut(s)	582
BsiEI	CGRYCG	3 cut(s)	37, 211, 367
BsiHKAI	GWGCWC	2 cut(s)	8, 495
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	6 cut(s)	357, 460, 488, 499, 552, 665
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	9 cut(s)	250, 253, 267, 438, 439, 466, 551, 671, 804
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	223
Bsp119I	TTCGAA	1 cut(s)	782
Bsp120I	GGGCCC	2 cut(s)	167, 442
Bsp1286I	GDGCHC	4 cut(s)	8, 171, 446, 495
Bsp13I	TCCGGA	1 cut(s)	551
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	5 cut(s)	42, 579, 583, 650, 667
Bsp68I	TCGCGA	1 cut(s)	509
BspACI	CCGC	7 cut(s)	66, 153, 202, 211, 214, 367, 844
BspDI	ATCGAT	1 cut(s)	582
BspEI	TCCGGA	1 cut(s)	551
BspFNI	CGCG	2 cut(s)	465, 509
BspLI	GGNNCC	5 cut(s)	169, 361, 443, 444, 445
BspPI	GGATC	2 cut(s)	587, 675
BspT104I	TTCGAA	1 cut(s)	782
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	4 cut(s)	196, 205, 248, 446
BssMI	GATC	5 cut(s)	42, 579, 583, 650, 667
BssNAI	GTATAC	1 cut(s)	20
BssNI	GRCGYC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	196
Bst1107I	GTATAC	1 cut(s)	20
Bst2UI	CCWGG	3 cut(s)	308, 386, 448
Bst4CI	ACNGT	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	814
BstAUI	TGTACA	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	380, 810, 888
BstDSI	CCRYGG	2 cut(s)	205, 248
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	2 cut(s)	465, 509
BstHHI	GCGC	4 cut(s)	122, 303, 438, 465
BstKTI	GATC	5 cut(s)	45, 582, 586, 653, 670
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	5 cut(s)	42, 579, 583, 650, 667
BstMCI	CGRYCG	3 cut(s)	37, 211, 367
BstNI	CCWGG	3 cut(s)	308, 386, 448
BstNSI	RCATGY	2 cut(s)	316, 890
BstSCI	CCNGG	3 cut(s)	306, 384, 446
BstSFI	CTRYAG	1 cut(s)	262
BstSLI	GKGCMC	2 cut(s)	171, 446
BstUI	CGCG	2 cut(s)	465, 509
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstZ17I	GTATAC	1 cut(s)	20
BstZI	CGGCCG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	582
BsuTUI	ATCGAT	1 cut(s)	582
BtgI	CCRYGG	2 cut(s)	205, 248
BtgZI	GCGATG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	828
BtuMI	TCGCGA	1 cut(s)	509
Cac8I	GCNNGC	3 cut(s)	380, 810, 888
CfoI	GCGC	4 cut(s)	122, 303, 438, 465
Cfr10I	RCCGGY	1 cut(s)	459
Cfr13I	GGNCC	5 cut(s)	167, 168, 442, 443, 795
ClaI	ATCGAT	1 cut(s)	582
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	316, 337
CviAII	CATG	6 cut(s)	14, 117, 313, 319, 352, 887
CviQI	GTAC	2 cut(s)	316, 337
DpnI	GATC	5 cut(s)	44, 581, 585, 652, 669
DpnII	GATC	5 cut(s)	42, 579, 583, 650, 667
DraI	TTTAAA	1 cut(s)	516
EaeI	YGGCCR	3 cut(s)	91, 208, 845
EagI	CGGCCG	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	196
Eco24I	GRGCYC	2 cut(s)	171, 446
Eco52I	CGGCCG	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	223
EcoO109I	RGGNCCY	2 cut(s)	442, 443
EcoRII	CCWGG	3 cut(s)	306, 384, 446
EcoT14I	CCWWGG	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	888
EcoT38I	GRGCYC	2 cut(s)	171, 446
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	6 cut(s)	17, 120, 316, 322, 355, 890
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	6 cut(s)	13, 116, 312, 318, 351, 886
FblI	GTMKAC	2 cut(s)	19, 184
Fnu4HI	GCNGC	6 cut(s)	67, 153, 202, 211, 214, 845
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	2 cut(s)	171, 446
Fsp4HI	GCNGC	6 cut(s)	67, 153, 202, 211, 214, 845
FspBI	CTAG	2 cut(s)	857, 926
GlaI	GCGC	4 cut(s)	121, 302, 437, 464
GluI	GCNGC	6 cut(s)	67, 153, 202, 211, 214, 845
GsaI	CCCAGC	1 cut(s)	442
GsuI	CTGGAG	1 cut(s)	368
HapII	CCGG	6 cut(s)	357, 460, 488, 499, 552, 665
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	4 cut(s)	122, 303, 438, 465
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	6 cut(s)	17, 120, 316, 322, 355, 890
Hin6I	GCGC	4 cut(s)	120, 301, 436, 463
HinP1I	GCGC	4 cut(s)	120, 301, 436, 463
HincII	GTYRAC	2 cut(s)	145, 185
HindII	GTYRAC	2 cut(s)	145, 185
HinfI	GANTC	4 cut(s)	257, 504, 555, 611
HpaII	CCGG	6 cut(s)	357, 460, 488, 499, 552, 665
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	4 cut(s)	20, 145, 185, 339
Hpy188I	TCNGA	5 cut(s)	10, 375, 415, 588, 655
Hpy188III	TCNNGA	5 cut(s)	508, 552, 570, 608, 944
Hpy8I	GTNNAC	4 cut(s)	20, 145, 185, 339
Hpy99I	CGWCG	4 cut(s)	183, 186, 189, 524
HpyAV	CCTTC	2 cut(s)	380, 555
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	749, 886
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	6 cut(s)	17, 120, 316, 322, 355, 890
HspAI	GCGC	4 cut(s)	120, 301, 436, 463
Kpn2I	TCCGGA	1 cut(s)	551
Kzo9I	GATC	5 cut(s)	42, 579, 583, 650, 667
LmnI	GCTCC	3 cut(s)	10, 322, 387
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	2 cut(s)	857, 926
MaeIII	GTNAC	3 cut(s)	104, 191, 826
MalI	GATC	5 cut(s)	44, 581, 585, 652, 669
MboI	GATC	5 cut(s)	42, 579, 583, 650, 667
MboII	GAAGA	2 cut(s)	22, 660
MhlI	GDGCHC	4 cut(s)	8, 171, 446, 495
MluCI	AATT	6 cut(s)	632, 690, 733, 784, 870, 921
MlyI	GAGTC	3 cut(s)	251, 498, 620
MmeI	TCCRAC	1 cut(s)	438
Mph1103I	ATGCAT	1 cut(s)	888
MroI	TCCGGA	1 cut(s)	551
MseI	TTAA	2 cut(s)	131, 515
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	6 cut(s)	357, 460, 488, 499, 552, 665
MspR9I	CCNGG	3 cut(s)	308, 386, 448
MssI	GTTTAAAC	1 cut(s)	516
MvaI	CCWGG	3 cut(s)	308, 386, 448
MvnI	CGCG	2 cut(s)	465, 509
NdeII	GATC	5 cut(s)	42, 579, 583, 650, 667
NlaIII	CATG	6 cut(s)	17, 120, 316, 322, 355, 890
NlaIV	GGNNCC	5 cut(s)	169, 361, 443, 444, 445
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	191, 826
NruI	TCGCGA	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	888
NspI	RCATGY	2 cut(s)	316, 890
NspV	TTCGAA	1 cut(s)	782
PaeI	GCATGC	1 cut(s)	890
PciI	ACATGT	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 187
PfeI	GAWTC	1 cut(s)	555
PflFI	GACNNNGTC	1 cut(s)	189
PkrI	GCNGC	6 cut(s)	68, 154, 203, 212, 215, 846
PleI	GAGTC	3 cut(s)	251, 498, 619
PmeI	GTTTAAAC	1 cut(s)	516
PpsI	GAGTC	3 cut(s)	251, 498, 619
PscI	ACATGT	1 cut(s)	312
Psp6I	CCWGG	3 cut(s)	306, 384, 446
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	3 cut(s)	306, 384, 446
PspN4I	GGNNCC	5 cut(s)	169, 361, 443, 444, 445
PspOMI	GGGCCC	2 cut(s)	167, 442
PspPI	GGNCC	5 cut(s)	167, 168, 442, 443, 795
PsyI	GACNNNGTC	1 cut(s)	189
PvuII	CAGCTG	1 cut(s)	267
RruI	TCGCGA	1 cut(s)	509
RsaI	GTAC	2 cut(s)	317, 338
RsaNI	GTAC	2 cut(s)	316, 337
RseI	CAYNNNNRTG	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	131, 515
SatI	GCNGC	6 cut(s)	67, 153, 202, 211, 214, 845
Sau3AI	GATC	5 cut(s)	42, 579, 583, 650, 667
Sau96I	GGNCC	5 cut(s)	167, 168, 442, 443, 795
SchI	GAGTC	3 cut(s)	251, 498, 620
ScrFI	CCNGG	3 cut(s)	308, 386, 448
SduI	GDGCHC	4 cut(s)	8, 171, 446, 495
SetI	ASST	9 cut(s)	128, 230, 269, 282, 309, 384, 420, 594, 685
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	262
SfiI	GGCCNNNNNGGCC	2 cut(s)	207, 395
SfuI	TTCGAA	1 cut(s)	782
SgrDI	CGTCGACG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	904
SmoI	CTYRAG	1 cut(s)	904
SphI	GCATGC	1 cut(s)	890
Sse9I	AATT	6 cut(s)	632, 690, 733, 784, 870, 921
SsiI	CCGC	7 cut(s)	66, 153, 202, 211, 214, 367, 844
SspMI	CTAG	2 cut(s)	857, 926
StyD4I	CCNGG	3 cut(s)	306, 384, 446
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	7 cut(s)	33, 41, 184, 275, 558, 582, 782
TasI	AATT	6 cut(s)	632, 690, 733, 784, 870, 921
TatI	WGTACW	2 cut(s)	315, 336
TauI	GCSGC	6 cut(s)	69, 155, 204, 213, 216, 847
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	2 cut(s)	131, 515
Tru9I	TTAA	2 cut(s)	131, 515
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	2 cut(s)	191, 826
Tsp45I	GTSAC	2 cut(s)	191, 826
TspDTI	ATGAA	2 cut(s)	517, 849
TspGWI	ACGGA	2 cut(s)	130, 356
TspRI	CASTG	1 cut(s)	835
Tth111I	GACNNNGTC	1 cut(s)	189
XapI	RAATTY	2 cut(s)	733, 784
XceI	RCATGY	2 cut(s)	316, 890
XmiI	GTMKAC	2 cut(s)	19, 184
XspI	CTAG	2 cut(s)	857, 926
Zsp2I	ATGCAT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.