Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Reverse (-)

7538610 .. 7539259

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG039800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTATGATAAAGACAATGACATGTTTAGGTTGTCTGTTAGGAACTTAAATTCTGGGGCATTGTGTAGTAAGCCTCAAGTGGAGCGTGTTTCGAATTTGGCTTGCGCCAAAGACGCGCAGGCATTGCTTTATGTCGTTACCGATCAGAAAAAGCGGCCATATAGGTGTTTTCTCGAGCAGGATGTTTTCGAAGAATTGGATAATAATGTGTATGTCAACATTAGTCACACGAAAGATTTTCGGTTTGTGACTGTAAATGCCTTCTCTACCGCGTCTTCCAAGATGCAGCCAAAGGAGTTCAGCCAGTTGATAACCATTATCTCCTTCGTAGTCATGTGGATTCTTCGAGCTGTCCAAGAATATGGGAGGTCTGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

126

Amino Acids

14.54

Weight (kDa)

8.46

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	116, 272
AciI	CCGC	2 cut(s)	154, 270
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	2 cut(s)	49, 94
AflIII	ACRYGT	1 cut(s)	21
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	2 cut(s)	49, 94
AspLEI	GCGC	2 cut(s)	107, 118
AsuII	TTCGAA	2 cut(s)	92, 189
AvaI	CYCGRG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	298
BisI	GCNGC	2 cut(s)	155, 287
BlsI	GCNGC	2 cut(s)	156, 288
BmeT110I	CYCGRG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	267
Bpu14I	TTCGAA	2 cut(s)	92, 189
BpuEI	CTTGAG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	298
Bsh1236I	CGCG	2 cut(s)	116, 272
BshFI	GGCC	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	173
BsnI	GGCC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	173
Bsp119I	TTCGAA	2 cut(s)	92, 189
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	154, 270
BspANI	GGCC	1 cut(s)	157
BspFNI	CGCG	2 cut(s)	116, 272
BspT104I	TTCGAA	2 cut(s)	92, 189
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstBI	TTCGAA	2 cut(s)	92, 189
BstC8I	GCNNGC	2 cut(s)	103, 120
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	2 cut(s)	116, 272
BstHHI	GCGC	2 cut(s)	107, 118
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 124
BstNSI	RCATGY	1 cut(s)	25
BstUI	CGCG	2 cut(s)	116, 272
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	103, 120
CfoI	GCGC	2 cut(s)	107, 118
CseI	GACGC	2 cut(s)	122, 261
CviAII	CATG	2 cut(s)	22, 334
CviJI	RGCY	7 cut(s)	73, 101, 157, 289, 303, 350, 377
CviKI_1	RGCY	7 cut(s)	73, 101, 157, 289, 303, 350, 377
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	173
FaeI	CATG	2 cut(s)	25, 337
FaiI	YATR	8 cut(s)	6, 23, 132, 160, 162, 213, 335, 363
FatI	CATG	2 cut(s)	21, 333
Fnu4HI	GCNGC	2 cut(s)	155, 287
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	155, 287
GlaI	GCGC	2 cut(s)	106, 117
GluI	GCNGC	2 cut(s)	155, 287
HaeIII	GGCC	1 cut(s)	157
HgaI	GACGC	2 cut(s)	122, 261
HhaI	GCGC	2 cut(s)	107, 118
Hin1II	CATG	2 cut(s)	25, 337
Hin6I	GCGC	2 cut(s)	105, 116
HinP1I	GCGC	2 cut(s)	105, 116
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	271, 334
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 124
Hsp92II	CATG	2 cut(s)	25, 337
HspAI	GCGC	2 cut(s)	105, 116
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	39, 104, 164, 317
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	136, 224, 247
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	203, 267, 335
MluCI	AATT	3 cut(s)	49, 94, 194
MnlI	CCTC	2 cut(s)	84, 360
MseI	TTAA	2 cut(s)	47, 379
MslI	CAYNNNNRTG	1 cut(s)	163
MvnI	CGCG	2 cut(s)	116, 272
MwoI	GCNNNNNNNGC	2 cut(s)	113, 124
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	25, 337
NmuCI	GTSAC	2 cut(s)	224, 247
NspI	RCATGY	1 cut(s)	25
NspV	TTCGAA	2 cut(s)	92, 189
PaeR7I	CTCGAG	1 cut(s)	173
PciI	ACATGT	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	156, 288
PscI	ACATGT	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	47, 379
SatI	GCNGC	2 cut(s)	155, 287
Sau3AI	GATC	1 cut(s)	142
SetI	ASST	4 cut(s)	32, 167, 352, 371
SfaNI	GCATC	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	173
SfuI	TTCGAA	2 cut(s)	92, 189
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	75, 173
SmoI	CTYRAG	2 cut(s)	75, 173
Sse9I	AATT	3 cut(s)	49, 94, 194
SsiI	CCGC	2 cut(s)	154, 270
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	4 cut(s)	92, 174, 189, 346
TasI	AATT	3 cut(s)	49, 94, 194
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	47, 379
Tru9I	TTAA	2 cut(s)	47, 379
TseFI	GTSAC	2 cut(s)	224, 247
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	224, 247
XapI	RAATTY	2 cut(s)	49, 94
XceI	RCATGY	1 cut(s)	25
XhoI	CTCGAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.