Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Forward (+)

4540885 .. 4541118

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCTCCACCTGGTAAAACCCCTCCGCCCCCATCTCCGCCATCTACGGTTGGCCCACTTTAAGGCCCCAACACCACCGGAATCAACTCTGAAGCAGCCAAACCCTCACCAGAAGCCCGAAACCTTCACCCTCCAAGACCACACGTGGCAGGACCCCTACAGCTGGATGTCCAAGCTCAACGGCAAGGTCGCCATGCGACACCTGGACATGTACATGGAACAGGAAGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

77

Amino Acids

9.24

Weight (kDa)

9.45

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	25, 37
AcuI	CTGAAG	1 cut(s)	110
AcvI	CACGTG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	61, 162
AflIII	ACRYGT	2 cut(s)	141, 207
AjnI	CCWGG	2 cut(s)	9, 201
AluBI	AGCT	2 cut(s)	162, 175
AluI	AGCT	2 cut(s)	162, 175
AoxI	GGCC	2 cut(s)	51, 63
ApeKI	GCWGC	1 cut(s)	94
AspS9I	GGNCC	3 cut(s)	52, 64, 151
AsuHPI	GGTGA	2 cut(s)	98, 118
AvaII	GGWCC	1 cut(s)	151
BbrPI	CACGTG	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	39, 48
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	11, 203
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	11, 203
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	52, 64, 151
BmiI	GGNNCC	2 cut(s)	66, 153
BmrFI	CCNGG	2 cut(s)	11, 203
BsaAI	YACGTR	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 162
BseBI	CCWGG	2 cut(s)	11, 203
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	61, 162
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	2 cut(s)	53, 65
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	61, 162
BsnI	GGCC	2 cut(s)	53, 65
Bsp1407I	TGTACA	1 cut(s)	210
BspACI	CCGC	2 cut(s)	25, 37
BspANI	GGCC	2 cut(s)	53, 65
BspLI	GGNNCC	2 cut(s)	66, 153
BsrGI	TGTACA	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	11, 203
Bst4CI	ACNGT	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	171
BstNI	CCWGG	2 cut(s)	11, 203
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	9, 201
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	53, 65
BtsCI	GGATG	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	52, 64, 151
CsiI	ACCWGGT	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	3 cut(s)	193, 208, 214
CviJI	RGCY	6 cut(s)	53, 65, 97, 115, 162, 175
CviKI_1	RGCY	6 cut(s)	53, 65, 97, 115, 162, 175
CviQI	GTAC	1 cut(s)	211
EciI	GGCGGA	2 cut(s)	14, 26
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	110
Eco72I	CACGTG	1 cut(s)	144
EcoO109I	RGGNCCY	2 cut(s)	64, 151
EcoRII	CCWGG	2 cut(s)	9, 201
FaeI	CATG	3 cut(s)	196, 211, 217
FaiI	YATR	3 cut(s)	194, 209, 215
FatI	CATG	3 cut(s)	192, 207, 213
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	53, 65
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	3 cut(s)	196, 211, 217
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	98, 118
Hpy188I	TCNGA	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	3 cut(s)	196, 211, 217
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	8 cut(s)	23, 90, 122, 134, 148, 188, 206, 215
Lsp1109I	GCAGC	1 cut(s)	106
MabI	ACCWGGT	1 cut(s)	9
MaeII	ACGT	1 cut(s)	143
MnlI	CCTC	3 cut(s)	32, 114, 140
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	11, 203
MvaI	CCWGG	2 cut(s)	11, 203
NlaIII	CATG	3 cut(s)	196, 211, 217
NlaIV	GGNNCC	2 cut(s)	66, 153
NspI	RCATGY	1 cut(s)	211
PciI	ACATGT	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	96
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	151
PscI	ACATGT	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	9, 201
PspCI	CACGTG	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	9, 201
PspN4I	GGNNCC	2 cut(s)	66, 153
PspPI	GGNCC	3 cut(s)	52, 64, 151
PspPPI	RGGWCCY	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	162
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	95
Sau96I	GGNCC	3 cut(s)	52, 64, 151
ScrFI	CCNGG	2 cut(s)	11, 203
SetI	ASST	7 cut(s)	12, 125, 146, 164, 177, 189, 204
SexAI	ACCWGGT	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	212
SsiI	CCGC	2 cut(s)	25, 37
StyD4I	CCNGG	2 cut(s)	9, 201
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	146
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseI	GCWGC	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	151
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.